Wall clock time and date at job start Mon Mar 30 2020 01:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35916 * 116.99900 * 2 1 4 4 C 1.39142 * 120.47338 * 179.97438 * 3 2 1 5 5 C 1.38535 * 118.37111 * 179.75386 * 4 3 2 6 6 C 1.38255 * 119.22178 * 0.53150 * 5 4 3 7 7 C 1.50705 * 119.55395 * 179.73396 * 6 5 4 8 8 H 1.08997 * 110.01241 * 351.76535 * 7 6 5 9 9 C 1.54317 * 109.88361 * 230.65308 * 7 6 5 10 10 C 1.55142 * 103.01901 * 218.30976 * 9 7 6 11 11 C 1.54902 * 101.65339 * 35.65458 * 10 9 7 12 12 N 1.47435 * 109.88941 * 112.88775 * 7 6 5 13 13 C 1.46902 * 111.00272 * 356.14558 * 12 7 6 14 14 C 1.52998 * 109.47386 * 194.35264 * 13 12 7 15 15 C 1.50699 * 109.47250 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00015 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99921 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00162 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99682 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47291 * 90.00142 * 19 17 15 21 21 H 1.48500 * 109.46763 * 209.99533 * 19 17 15 22 22 H 1.48497 * 109.47345 * 329.99892 * 19 17 15 23 23 N 1.31841 * 120.88768 * 359.45879 * 6 5 4 24 24 C 1.31846 * 121.78134 * 0.27062 * 23 6 5 25 25 H 1.08999 * 109.47182 * 60.00198 * 1 2 3 26 26 H 1.08999 * 109.46880 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47616 * 300.00219 * 1 2 3 28 28 H 1.08000 * 120.81149 * 0.02563 * 4 3 2 29 29 H 1.08000 * 120.38731 * 180.26196 * 5 4 3 30 30 H 1.08995 * 110.71478 * 336.69402 * 9 7 6 31 31 H 1.09009 * 110.70415 * 99.93205 * 9 7 6 32 32 H 1.09003 * 110.98993 * 277.56364 * 10 9 7 33 33 H 1.09000 * 110.99043 * 153.74698 * 10 9 7 34 34 H 1.08993 * 110.37779 * 204.09799 * 11 10 9 35 35 H 1.09007 * 110.46680 * 81.80596 * 11 10 9 36 36 H 1.09004 * 109.46726 * 314.34774 * 13 12 7 37 37 H 1.09001 * 109.47324 * 74.34967 * 13 12 7 38 38 H 1.09004 * 109.46788 * 299.99472 * 14 13 12 39 39 H 1.09003 * 109.47640 * 59.99484 * 14 13 12 40 40 H 0.97006 * 120.00258 * 180.02562 * 18 17 15 41 41 H 1.08003 * 119.65742 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2954 0.0005 5 6 4.0181 2.5519 -0.0047 6 6 3.2078 3.6721 0.0009 7 6 3.8343 5.0428 0.0013 8 1 4.9118 4.9603 0.1435 9 6 3.2202 5.9002 1.1278 10 6 3.1148 7.3057 0.4794 11 6 2.7666 6.9483 -0.9871 12 7 3.5474 5.7259 -1.2733 13 6 2.8207 4.8405 -2.1932 14 6 2.8531 5.4328 -3.6035 15 6 2.1081 4.5243 -4.5472 16 1 1.6570 3.6151 -4.1781 17 6 2.0024 4.8538 -5.8818 18 7 2.5512 5.9611 -6.3312 19 14 1.0796 3.7272 -7.0517 20 1 -0.3507 4.1241 -7.0962 21 1 1.6664 3.8378 -8.4114 22 1 1.1895 2.3242 -6.5777 23 7 1.8944 3.5574 0.0005 24 6 1.3001 2.3805 0.0000 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 4.0432 0.4030 0.0005 29 1 5.0931 2.6553 -0.0087 30 1 2.2334 5.5273 1.4019 31 1 3.8789 5.9248 1.9961 32 1 4.0662 7.8346 0.5371 33 1 2.3170 7.8890 0.9391 34 1 3.0662 7.7552 -1.6557 35 1 1.6996 6.7494 -1.0879 36 1 3.2929 3.8581 -2.2008 37 1 1.7863 4.7439 -1.8633 38 1 2.3809 6.4153 -3.5958 39 1 3.8875 5.5295 -3.9334 40 1 2.4766 6.1932 -7.2701 41 1 0.2214 2.3264 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934340542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:12 Heat of formation + Delta-G solvation = -16.487814 kcal Electronic energy + Delta-G solvation = -21844.893343 eV Core-core repulsion = 18724.278698 eV Total energy + Delta-G solvation = -3120.614645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.98900 -40.22850 -38.53413 -35.64697 -33.56525 -33.40637 -32.47332 -30.21521 -29.05801 -28.12520 -26.33109 -24.72565 -23.74347 -23.14499 -21.76937 -20.87831 -19.12461 -18.63290 -18.09899 -17.21712 -16.87171 -16.66224 -16.36523 -15.97211 -15.65252 -15.11831 -14.94165 -14.88666 -14.35321 -14.18049 -13.93018 -13.61970 -13.53595 -13.09350 -12.93702 -12.79941 -12.69721 -12.43314 -12.36437 -12.08228 -11.94466 -11.77978 -11.52140 -11.37518 -11.23993 -10.68594 -10.56982 -10.41657 -9.45864 -9.05399 -8.23024 -6.34799 0.11688 0.28470 1.34276 1.36627 1.47619 2.22756 2.36315 2.69201 3.09343 3.20033 3.38091 3.64816 3.70034 3.81826 3.87140 4.05160 4.27697 4.33445 4.34600 4.41330 4.45954 4.54937 4.61549 4.66928 4.69664 4.73828 4.90610 4.96164 4.99003 5.07745 5.09575 5.14373 5.23396 5.40213 5.44005 5.50688 5.64624 5.75980 6.07940 6.20680 6.22550 6.32751 6.81024 6.98995 7.33745 8.89279 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.006881 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.258479 B = 4068.413268 C = 5925.909138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.067 3.933 4 C -0.114 4.114 5 C -0.124 4.124 6 C 0.071 3.929 7 C 0.117 3.883 8 H 0.113 0.887 9 C -0.120 4.120 10 C -0.114 4.114 11 C 0.043 3.957 12 N -0.527 5.527 13 C 0.090 3.910 14 C 0.040 3.960 15 C -0.543 4.543 16 H 0.049 0.951 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.964 3.036 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.266 1.266 23 N -0.461 5.461 24 C 0.007 3.993 25 H 0.054 0.946 26 H 0.127 0.873 27 H 0.070 0.930 28 H 0.163 0.837 29 H 0.166 0.834 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.026 0.974 36 H 0.044 0.956 37 H 0.028 0.972 38 H -0.012 1.012 39 H -0.010 1.010 40 H 0.265 0.735 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 -8.015 18.245 19.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.019 3.981 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.068 4.068 7 C 0.009 3.991 8 H 0.131 0.869 9 C -0.159 4.159 10 C -0.152 4.152 11 C -0.085 4.085 12 N -0.251 5.251 13 C -0.038 4.038 14 C 0.002 3.998 15 C -0.581 4.581 16 H 0.067 0.933 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.788 3.212 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.191 1.191 23 N -0.172 5.172 24 C -0.151 4.151 25 H 0.073 0.927 26 H 0.145 0.855 27 H 0.088 0.912 28 H 0.181 0.819 29 H 0.184 0.816 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.006 0.994 39 H 0.008 0.992 40 H 0.074 0.926 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.500 -7.239 17.845 19.264 hybrid contribution -1.075 -1.201 -0.878 1.835 sum -1.574 -8.440 16.967 19.016 Atomic orbital electron populations 1.23385 0.76315 1.06009 1.02153 1.86035 1.23502 1.25573 1.88529 1.20170 0.93774 0.85897 0.98285 1.21209 0.91772 0.99512 1.01489 1.22119 1.02631 0.91237 0.98450 1.21599 0.89358 0.96990 0.98862 1.21674 0.99968 0.87650 0.89832 0.86917 1.22770 1.01499 0.94235 0.97362 1.22664 1.03001 0.96953 0.92539 1.23020 0.95129 0.92477 0.97873 1.63926 1.44480 1.06030 1.10663 1.22105 0.94746 0.94307 0.92626 1.18879 0.94792 0.94714 0.91393 1.21503 1.34747 1.07513 0.94366 0.93311 1.25936 0.96494 0.96877 1.00083 1.70104 1.45735 1.25433 1.15583 0.85474 0.78759 0.79085 0.77903 1.19553 1.20128 1.19053 1.67307 1.12426 1.27307 1.10124 1.23107 1.01236 0.87172 1.03575 0.92687 0.85510 0.91180 0.81898 0.81640 0.91701 0.88287 0.89356 0.89448 0.91890 0.95603 0.93796 0.95384 0.99363 0.99161 0.92624 0.81503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.82 113.37 1.11 1.37 16 2 O -0.32 -7.88 10.51 -92.61 -0.97 -8.86 16 3 C 0.07 1.83 6.71 22.60 0.15 1.99 16 4 C -0.11 -2.92 10.13 22.56 0.23 -2.69 16 5 C -0.12 -3.31 9.49 22.34 0.21 -3.10 16 6 C 0.07 2.22 3.45 42.56 0.15 2.36 16 7 C 0.12 3.54 3.71 44.51 0.17 3.71 16 8 H 0.11 2.92 7.91 -2.39 -0.02 2.91 16 9 C -0.12 -3.00 6.42 31.78 0.20 -2.79 16 10 C -0.11 -2.88 7.08 31.98 0.23 -2.66 16 11 C 0.04 1.55 6.00 86.77 0.52 2.07 16 12 N -0.53 -20.67 5.13 -864.91 -4.44 -25.10 16 13 C 0.09 4.26 3.54 86.30 0.31 4.56 16 14 C 0.04 2.30 5.07 29.85 0.15 2.45 16 15 C -0.54 -33.09 9.11 25.60 0.23 -32.86 16 16 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 17 C 0.00 0.26 5.46 84.66 0.46 0.72 16 18 N -0.93 -58.68 13.29 21.45 0.28 -58.39 16 19 Si 0.96 45.97 29.54 68.60 2.03 48.00 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 N -0.46 -15.61 7.41 -183.48 -1.36 -16.97 16 24 C 0.01 0.22 10.22 84.80 0.87 1.09 16 25 H 0.05 0.97 7.68 -2.39 -0.02 0.95 16 26 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 0.96 7.68 -2.39 -0.02 0.94 16 28 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 29 H 0.17 3.41 7.97 -2.91 -0.02 3.39 16 30 H 0.06 1.79 7.22 -2.39 -0.02 1.78 16 31 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.03 1.03 7.55 -2.38 -0.02 1.01 16 36 H 0.04 2.11 6.52 -2.38 -0.02 2.10 16 37 H 0.03 1.39 6.26 -2.39 -0.01 1.37 16 38 H -0.01 -0.75 7.65 -2.38 -0.02 -0.76 16 39 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 40 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 41 H 0.17 4.21 6.32 -2.91 -0.02 4.19 16 Total: -1.00 -74.15 329.12 1.53 -72.62 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.01 Total: 12.48 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 4.99 Total: -23.78 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -5.51 Total: -100.46 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.97 Total: -8.86 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -74.15 1.53 -72.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934340542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.129 kcal (2) G-P(sol) polarization free energy of solvation -74.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds