Wall clock time and date at job start Mon Mar 30 2020 01:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35910 * 117.00158 * 2 1 4 4 C 1.39138 * 120.47092 * 179.97438 * 3 2 1 5 5 C 1.38539 * 118.37124 * 179.75489 * 4 3 2 6 6 C 1.38250 * 119.22229 * 0.53166 * 5 4 3 7 7 C 1.50695 * 119.55900 * 179.72774 * 6 5 4 8 8 H 1.09004 * 109.88300 * 9.05668 * 7 6 5 9 9 C 1.54324 * 110.02591 * 130.17128 * 7 6 5 10 10 C 1.55434 * 103.04773 * 141.76829 * 9 7 6 11 11 C 1.54905 * 101.52030 * 324.36675 * 10 9 7 12 12 N 1.47441 * 109.89420 * 248.02171 * 7 6 5 13 13 C 1.46904 * 110.99902 * 3.69322 * 12 7 6 14 14 C 1.52999 * 109.47424 * 173.23561 * 13 12 7 15 15 C 1.50692 * 109.47156 * 185.04352 * 14 13 12 16 16 H 1.08004 * 120.00299 * 355.06743 * 15 14 13 17 17 C 1.37880 * 120.00264 * 175.06770 * 15 14 13 18 18 N 1.31514 * 120.00270 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99517 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46974 * 90.00404 * 19 17 15 21 21 H 1.48502 * 109.46855 * 210.00275 * 19 17 15 22 22 H 1.48501 * 109.47523 * 330.00296 * 19 17 15 23 23 N 1.31849 * 120.88254 * 359.45744 * 6 5 4 24 24 C 1.31836 * 121.78494 * 0.27577 * 23 6 5 25 25 H 1.09001 * 109.46456 * 299.99788 * 1 2 3 26 26 H 1.08995 * 109.46997 * 59.99307 * 1 2 3 27 27 H 1.09003 * 109.47072 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.81971 * 0.02562 * 4 3 2 29 29 H 1.08001 * 120.38691 * 180.26010 * 5 4 3 30 30 H 1.09003 * 110.70657 * 260.15482 * 9 7 6 31 31 H 1.08997 * 110.69924 * 23.20682 * 9 7 6 32 32 H 1.09000 * 111.10257 * 206.29904 * 10 9 7 33 33 H 1.08992 * 111.00241 * 82.39141 * 10 9 7 34 34 H 1.09002 * 110.37660 * 278.18182 * 11 10 9 35 35 H 1.08995 * 110.37377 * 155.94834 * 11 10 9 36 36 H 1.09000 * 109.46816 * 293.23482 * 13 12 7 37 37 H 1.08995 * 109.47369 * 53.23087 * 13 12 7 38 38 H 1.09000 * 109.46963 * 305.04532 * 14 13 12 39 39 H 1.09003 * 109.46927 * 65.04107 * 14 13 12 40 40 H 0.96999 * 119.99706 * 180.02562 * 18 17 15 41 41 H 1.07996 * 119.65781 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 3.4349 1.2952 0.0005 5 6 4.0182 2.5517 -0.0047 6 6 3.2081 3.6720 0.0010 7 6 3.8346 5.0425 0.0015 8 1 4.9088 4.9592 -0.1642 9 6 3.1994 5.9145 -1.1020 10 6 3.1109 7.3155 -0.4347 11 6 2.7930 6.9392 1.0339 12 7 3.5763 5.7117 1.2897 13 6 2.8669 4.8175 2.2145 14 6 2.7661 5.4814 3.5893 15 6 2.1496 4.5165 4.5690 16 1 1.7859 3.5586 4.2275 17 6 2.0499 4.8565 5.9015 18 7 1.5123 4.0142 6.7566 19 14 2.6796 6.5129 6.4923 20 1 1.5871 7.5154 6.4109 21 1 3.1389 6.3945 7.8996 22 1 3.8133 6.9456 5.6363 23 7 1.8946 3.5573 0.0005 24 6 1.3003 2.3804 0.0001 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0433 0.4029 0.0005 29 1 5.0933 2.6549 -0.0087 30 1 3.8396 5.9474 -1.9835 31 1 2.2073 5.5451 -1.3615 32 1 2.3051 7.9070 -0.8694 33 1 4.0622 7.8427 -0.5056 34 1 1.7278 6.7412 1.1530 35 1 3.1075 7.7370 1.7066 36 1 1.8654 4.6199 1.8322 37 1 3.4136 3.8788 2.3035 38 1 3.7625 5.7603 3.9320 39 1 2.1437 6.3734 3.5172 40 1 1.4419 4.2536 7.6940 41 1 0.2217 2.3265 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934340543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:15 Heat of formation + Delta-G solvation = -14.490849 kcal Electronic energy + Delta-G solvation = -21874.775001 eV Core-core repulsion = 18754.246951 eV Total energy + Delta-G solvation = -3120.528050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.99779 -40.24625 -38.55549 -35.61842 -33.72681 -33.43473 -32.49722 -30.59136 -29.07133 -28.14517 -26.26524 -24.71478 -23.76139 -23.00531 -21.65910 -20.87659 -19.17480 -19.01184 -18.14560 -17.22833 -16.89962 -16.68677 -16.20009 -15.99520 -15.61715 -15.16783 -15.08882 -14.87302 -14.67105 -14.19615 -14.07163 -13.65465 -13.58328 -13.14001 -13.03671 -12.81564 -12.65777 -12.41918 -12.09364 -11.94892 -11.84548 -11.73711 -11.55012 -11.50421 -11.41219 -10.80358 -10.66850 -10.44713 -9.46923 -9.09065 -8.33276 -6.37757 0.10134 0.26684 1.32903 1.35535 1.49136 2.21186 2.34022 2.67061 3.01865 3.16046 3.36110 3.63406 3.68648 3.81126 3.87062 4.03683 4.27718 4.30902 4.32637 4.40343 4.42131 4.53783 4.59040 4.64124 4.67752 4.69623 4.89999 4.93546 4.96886 5.02045 5.09683 5.13602 5.21275 5.27501 5.41893 5.45602 5.52532 5.60836 6.09329 6.17285 6.18817 6.28210 6.68504 6.96562 7.26792 8.83742 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.006467 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.156720 B = 4328.465843 C = 5891.797913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.066 3.934 4 C -0.116 4.116 5 C -0.123 4.123 6 C 0.068 3.932 7 C 0.119 3.881 8 H 0.116 0.884 9 C -0.122 4.122 10 C -0.114 4.114 11 C 0.037 3.963 12 N -0.523 5.523 13 C 0.086 3.914 14 C 0.000 4.000 15 C -0.531 4.531 16 H 0.022 0.978 17 C 0.008 3.992 18 N -0.950 5.950 19 Si 0.953 3.047 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.247 1.247 23 N -0.459 5.459 24 C 0.005 3.995 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.127 0.873 28 H 0.163 0.837 29 H 0.169 0.831 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.027 0.973 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.041 0.959 38 H 0.023 0.977 39 H 0.011 0.989 40 H 0.267 0.733 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.371 -0.725 -19.781 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.018 3.982 4 C -0.142 4.142 5 C -0.143 4.143 6 C -0.071 4.071 7 C 0.011 3.989 8 H 0.134 0.866 9 C -0.161 4.161 10 C -0.152 4.152 11 C -0.091 4.091 12 N -0.246 5.246 13 C -0.042 4.042 14 C -0.037 4.037 15 C -0.569 4.569 16 H 0.040 0.960 17 C -0.189 4.189 18 N -0.591 5.591 19 Si 0.776 3.224 20 H -0.190 1.190 21 H -0.205 1.205 22 H -0.171 1.171 23 N -0.170 5.170 24 C -0.153 4.153 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.145 0.855 28 H 0.180 0.820 29 H 0.186 0.814 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.030 0.970 40 H 0.076 0.924 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.362 -0.086 -19.369 19.659 hybrid contribution -0.877 -0.862 0.716 1.423 sum 2.485 -0.948 -18.653 18.842 Atomic orbital electron populations 1.23379 0.76339 1.06024 1.02053 1.86030 1.23487 1.25671 1.88519 1.20200 0.93882 0.85900 0.98243 1.21232 0.91696 0.99710 1.01562 1.22138 1.02702 0.91146 0.98286 1.21677 0.89261 0.97207 0.98926 1.21657 1.00082 0.87430 0.89764 0.86585 1.22824 1.01334 0.94387 0.97543 1.22712 1.03183 0.96676 0.92598 1.23093 0.95357 0.92394 0.98208 1.64005 1.44999 1.05751 1.09892 1.22019 0.95413 0.94425 0.92333 1.19438 0.96063 0.95278 0.92951 1.21320 1.39628 1.02480 0.93470 0.95982 1.25992 0.94765 1.01509 0.96668 1.70068 1.46704 1.38425 1.03866 0.85617 0.80057 0.79113 0.77637 1.19046 1.20495 1.17085 1.67296 1.12532 1.27127 1.10034 1.23075 1.01183 0.87317 1.03751 0.93015 0.91026 0.85452 0.81964 0.81383 0.88420 0.91897 0.89535 0.89105 0.95441 0.90722 0.95082 0.94001 0.95880 0.97047 0.92379 0.81746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.82 113.37 1.11 1.42 16 2 O -0.32 -8.56 10.51 -92.54 -0.97 -9.53 16 3 C 0.07 1.92 6.71 22.60 0.15 2.07 16 4 C -0.12 -3.10 10.13 22.56 0.23 -2.87 16 5 C -0.12 -3.27 9.55 22.34 0.21 -3.06 16 6 C 0.07 2.11 3.57 42.56 0.15 2.26 16 7 C 0.12 3.36 3.71 44.51 0.17 3.53 16 8 H 0.12 2.74 7.91 -2.38 -0.02 2.72 16 9 C -0.12 -2.85 6.43 31.88 0.20 -2.64 16 10 C -0.11 -2.57 7.10 32.08 0.23 -2.34 16 11 C 0.04 1.19 5.70 86.77 0.49 1.68 16 12 N -0.52 -18.64 5.19 -864.89 -4.49 -23.12 16 13 C 0.09 3.86 3.58 86.30 0.31 4.17 16 14 C 0.00 0.03 3.98 29.85 0.12 0.14 16 15 C -0.53 -32.78 9.66 25.60 0.25 -32.53 16 16 H 0.02 1.50 7.99 -2.91 -0.02 1.48 16 17 C 0.01 0.46 5.47 84.66 0.46 0.92 16 18 N -0.95 -61.67 13.96 21.45 0.30 -61.37 16 19 Si 0.95 46.40 27.57 68.60 1.89 48.29 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.25 -11.38 6.40 99.48 0.64 -10.75 16 23 N -0.46 -15.69 7.27 -183.50 -1.33 -17.02 16 24 C 0.00 0.15 10.22 84.80 0.87 1.02 16 25 H 0.05 1.07 7.68 -2.39 -0.02 1.05 16 26 H 0.07 1.10 7.68 -2.39 -0.02 1.08 16 27 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 29 H 0.17 3.37 7.97 -2.91 -0.02 3.35 16 30 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.68 7.19 -2.39 -0.02 1.66 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.03 0.99 7.68 -2.39 -0.02 0.97 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.03 1.49 5.98 -2.39 -0.01 1.48 16 37 H 0.04 1.99 7.02 -2.39 -0.02 1.98 16 38 H 0.02 1.19 6.85 -2.39 -0.02 1.17 16 39 H 0.01 0.57 7.22 -2.39 -0.02 0.55 16 40 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 41 H 0.17 4.47 6.32 -2.91 -0.02 4.45 16 Total: -1.00 -75.33 325.28 1.29 -74.04 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.94 Total: 14.95 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 4.96 Total: -26.24 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -5.52 Total: -101.51 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.97 Total: -9.53 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.89 Total: 48.29 kcal Total: -75.33 1.29 -74.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934340543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.546 kcal (2) G-P(sol) polarization free energy of solvation -75.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds