Wall clock time and date at job start Mon Mar 30 2020 02:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46847 * 2 1 4 4 N 1.46898 * 109.46976 * 240.00161 * 2 1 3 5 5 C 1.46903 * 110.99684 * 152.22703 * 4 2 1 6 6 C 1.53043 * 109.46268 * 273.20657 * 5 4 2 7 7 C 1.53192 * 109.30991 * 178.61594 * 6 5 4 8 8 N 1.46922 * 108.77717 * 54.63977 * 7 6 5 9 9 C 1.36943 * 120.63377 * 126.36626 * 8 7 6 10 10 H 1.08002 * 119.99268 * 325.23520 * 9 8 7 11 11 C 1.38809 * 119.99913 * 145.23392 * 9 8 7 12 12 N 1.31614 * 120.00336 * 344.91661 * 11 9 8 13 13 Si 1.86803 * 119.99519 * 164.91445 * 11 9 8 14 14 H 1.48502 * 109.47000 * 90.00469 * 13 11 9 15 15 H 1.48504 * 109.47041 * 209.99833 * 13 11 9 16 16 H 1.48494 * 109.47441 * 330.00374 * 13 11 9 17 17 C 1.46927 * 118.73958 * 306.38691 * 8 7 6 18 18 C 1.53050 * 109.45597 * 153.13985 * 5 4 2 19 19 C 1.50693 * 109.47313 * 119.99655 * 2 1 3 20 20 C 1.38386 * 120.00763 * 275.00110 * 19 2 1 21 21 N 1.32118 * 120.00133 * 179.97438 * 20 19 2 22 22 C 1.32153 * 120.00327 * 0.02562 * 21 20 19 23 23 C 1.38346 * 119.99735 * 0.24460 * 22 21 20 24 24 N 1.32126 * 119.99747 * 94.97881 * 19 2 1 25 25 H 1.09000 * 109.47097 * 55.74001 * 1 2 3 26 26 H 1.08993 * 109.46993 * 175.74159 * 1 2 3 27 27 H 1.09000 * 109.46914 * 295.74439 * 1 2 3 28 28 H 1.00895 * 111.00195 * 276.18089 * 4 2 1 29 29 H 1.08997 * 109.46125 * 33.17512 * 5 4 2 30 30 H 1.08997 * 109.49621 * 298.56820 * 6 5 4 31 31 H 1.08997 * 109.49292 * 58.66334 * 6 5 4 32 32 H 1.08993 * 109.58860 * 294.84938 * 7 6 5 33 33 H 1.09006 * 109.70041 * 174.49467 * 7 6 5 34 34 H 0.96999 * 120.00238 * 179.97438 * 12 11 9 35 35 H 1.08995 * 109.58547 * 293.82426 * 17 8 7 36 36 H 1.08994 * 109.70557 * 173.46396 * 17 8 7 37 37 H 1.08994 * 109.49372 * 301.33778 * 18 5 4 38 38 H 1.08996 * 109.49348 * 61.40400 * 18 5 4 39 39 H 1.08007 * 119.99785 * 359.95469 * 20 19 2 40 40 H 1.07997 * 120.00229 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.99443 * 179.72597 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.3392 -0.1849 -1.5985 6 6 3.1633 1.0348 -2.5059 7 6 4.5411 1.5820 -2.8919 8 7 5.3315 0.4960 -3.4873 9 6 5.9111 0.6489 -4.7186 10 1 5.4118 1.2266 -5.4823 11 6 7.1402 0.0613 -4.9848 12 7 7.8854 -0.3831 -3.9951 13 14 7.7366 -0.0985 -6.7478 14 1 8.5140 1.1111 -7.1190 15 1 8.6013 -1.2995 -6.8709 16 1 6.5689 -0.2341 -7.6551 17 6 5.4878 -0.7574 -2.7368 18 6 4.0994 -1.2785 -2.3526 19 6 2.0324 -0.7103 1.2304 20 6 2.1646 -0.0200 2.4225 21 7 2.6046 -0.6430 3.5013 22 6 2.9189 -1.9252 3.4420 23 6 2.7920 -2.6140 2.2489 24 7 2.3462 -1.9924 1.1712 25 1 -0.3633 0.5785 -0.8494 26 1 -0.3633 -1.0248 -0.0763 27 1 -0.3633 0.4464 0.9257 28 1 2.0446 -1.6908 -1.0558 29 1 3.9019 0.1017 -0.7101 30 1 2.6223 0.7435 -3.4062 31 1 2.6015 1.8042 -1.9763 32 1 5.0475 1.9573 -2.0026 33 1 4.4265 2.3895 -3.6151 34 1 8.7441 -0.7940 -4.1812 35 1 6.0713 -0.5729 -1.8349 36 1 5.9965 -1.4958 -3.3565 37 1 4.2038 -2.1554 -1.7138 38 1 3.5492 -1.5484 -3.2540 39 1 1.9084 1.0281 2.4709 40 1 3.2789 -2.4344 4.3237 41 1 3.0531 -3.6608 2.1994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116295092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:12 Heat of formation + Delta-G solvation = 66.600769 kcal Electronic energy + Delta-G solvation = -21684.148012 eV Core-core repulsion = 18599.429109 eV Total energy + Delta-G solvation = -3084.718902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.31550 -38.17989 -36.04269 -34.13497 -33.07838 -31.35760 -30.30474 -29.67565 -28.17236 -25.09735 -24.80788 -24.19898 -22.30021 -21.57952 -20.74945 -19.01861 -17.67817 -17.25526 -16.75603 -16.40607 -15.16764 -14.95861 -14.71361 -14.49464 -13.95289 -13.69011 -13.46593 -13.21390 -12.99834 -12.91698 -12.37538 -12.08512 -11.83487 -11.73944 -11.38144 -11.28839 -11.25327 -10.94280 -10.77355 -10.67930 -10.32267 -10.16296 -9.96202 -9.59305 -9.45452 -9.35197 -9.25696 -8.44609 -8.17804 -6.53230 -5.76289 -3.24775 0.59430 0.97134 3.38987 3.45829 3.48957 3.51805 3.78907 4.05688 4.25681 4.52363 4.53478 4.56951 4.99358 5.12423 5.22389 5.26798 5.28672 5.41182 5.47690 5.58368 5.64775 5.77243 5.84851 5.98659 6.09679 6.17963 6.22753 6.41064 6.54156 6.58896 6.70189 6.71688 6.89007 7.07350 7.10378 7.36047 7.37643 7.59880 7.63245 7.76945 7.84943 8.53175 9.25718 9.87570 10.49268 11.32162 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.004171 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.250562 B = 6711.025102 C = 7193.652207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.135 3.865 3 H 0.096 0.904 4 N -0.673 5.673 5 C 0.099 3.901 6 C -0.117 4.117 7 C 0.145 3.855 8 N -0.589 5.589 9 C -0.256 4.256 10 H 0.062 0.938 11 C 0.008 3.992 12 N -0.901 5.901 13 Si 0.900 3.100 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.278 1.278 17 C 0.180 3.820 18 C -0.139 4.139 19 C 0.061 3.939 20 C 0.052 3.948 21 N -0.437 5.437 22 C 0.037 3.963 23 C 0.058 3.942 24 N -0.434 5.434 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.353 0.647 29 H 0.030 0.970 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.012 0.988 33 H 0.055 0.945 34 H 0.253 0.747 35 H 0.015 0.985 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.148 -2.285 12.991 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.023 3.977 3 H 0.114 0.886 4 N -0.305 5.305 5 C -0.010 4.010 6 C -0.157 4.157 7 C 0.018 3.982 8 N -0.312 5.312 9 C -0.386 4.386 10 H 0.079 0.921 11 C -0.191 4.191 12 N -0.545 5.545 13 Si 0.730 3.270 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.203 1.203 17 C 0.053 3.947 18 C -0.179 4.179 19 C -0.081 4.081 20 C -0.108 4.108 21 N -0.151 5.151 22 C -0.122 4.122 23 C -0.102 4.102 24 N -0.149 5.149 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.175 0.825 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.185 0.815 40 H 0.185 0.815 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.311 -1.975 12.530 18.387 hybrid contribution 1.128 -0.649 0.039 1.302 sum -12.183 -2.624 12.569 17.700 Atomic orbital electron populations 1.21736 0.92864 1.02610 1.01784 1.20673 0.96024 0.97197 0.83839 0.88617 1.60792 1.27951 1.10375 1.31382 1.21444 0.86985 0.96271 0.96314 1.22037 0.98902 0.95745 0.99037 1.20938 0.89886 0.91433 0.95965 1.43947 1.59075 1.09588 1.18607 1.19113 0.98878 1.32159 0.88479 0.92061 1.25209 0.95281 1.01400 0.97197 1.70026 1.11274 1.43417 1.29734 0.86341 0.78460 0.77321 0.84899 1.21317 1.21587 1.20326 1.20603 0.90238 0.88920 0.94934 1.22374 1.00092 0.96097 0.99349 1.23411 0.95193 0.91546 0.97992 1.23595 0.96603 1.01621 0.89007 1.68419 1.07168 1.09480 1.30044 1.23733 0.97883 0.91309 0.99313 1.23770 0.95480 1.01688 0.89260 1.68049 1.07830 1.08948 1.30118 0.90840 0.92394 0.92741 0.82537 0.95171 0.91677 0.93613 0.97002 0.92695 0.93678 0.96702 0.90564 0.93651 0.91836 0.81525 0.81491 0.81320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.50 37.16 0.35 -0.96 16 2 C 0.14 1.63 2.67 -68.87 -0.18 1.45 16 3 H 0.10 1.13 7.22 -51.93 -0.37 0.75 16 4 N -0.67 -9.89 6.05 -100.90 -0.61 -10.51 16 5 C 0.10 1.73 2.25 -67.66 -0.15 1.58 16 6 C -0.12 -2.12 5.59 -26.61 -0.15 -2.27 16 7 C 0.14 3.14 6.52 -3.71 -0.02 3.11 16 8 N -0.59 -15.14 2.95 -172.32 -0.51 -15.65 16 9 C -0.26 -7.18 9.51 -15.06 -0.14 -7.33 16 10 H 0.06 1.69 7.87 -52.49 -0.41 1.28 16 11 C 0.01 0.24 4.92 -17.43 -0.09 0.15 16 12 N -0.90 -26.66 11.60 55.49 0.64 -26.02 16 13 Si 0.90 21.89 29.58 -169.99 -5.03 16.87 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.18 4.39 5.26 -3.71 -0.02 4.37 16 18 C -0.14 -2.76 5.34 -26.60 -0.14 -2.90 16 19 C 0.06 0.75 5.70 -82.41 -0.47 0.28 16 20 C 0.05 0.60 10.90 -17.37 -0.19 0.41 16 21 N -0.44 -5.19 10.50 -13.06 -0.14 -5.33 16 22 C 0.04 0.37 11.22 -17.37 -0.20 0.17 16 23 C 0.06 0.60 11.22 -17.37 -0.19 0.40 16 24 N -0.43 -5.55 9.00 -9.29 -0.08 -5.63 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.35 5.35 6.92 -39.29 -0.27 5.07 16 29 H 0.03 0.57 7.71 -51.93 -0.40 0.17 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 0.72 7.59 -51.93 -0.39 0.32 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 1.17 7.93 -51.93 -0.41 0.75 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 2.06 6.53 -51.93 -0.34 1.73 16 37 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 40 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -31.63 330.96 -8.72 -40.35 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.39 Total: 2.47 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.60 Total: -1.54 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.70 Total: -63.13 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.63 -8.72 -40.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116295092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.952 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds