Wall clock time and date at job start Mon Mar 30 2020 02:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46847 * 2 1 4 4 N 1.46898 * 109.46976 * 240.00161 * 2 1 3 5 5 C 1.46903 * 110.99684 * 152.22703 * 4 2 1 6 6 C 1.53043 * 109.46268 * 273.20657 * 5 4 2 7 7 C 1.53192 * 109.30991 * 178.61594 * 6 5 4 8 8 N 1.46922 * 108.77717 * 54.63977 * 7 6 5 9 9 C 1.36943 * 120.63377 * 126.36626 * 8 7 6 10 10 H 1.08002 * 119.99268 * 325.23520 * 9 8 7 11 11 C 1.38809 * 119.99913 * 145.23392 * 9 8 7 12 12 N 1.31614 * 120.00336 * 344.91661 * 11 9 8 13 13 Si 1.86803 * 119.99519 * 164.91445 * 11 9 8 14 14 H 1.48502 * 109.47000 * 90.00469 * 13 11 9 15 15 H 1.48504 * 109.47041 * 209.99833 * 13 11 9 16 16 H 1.48494 * 109.47441 * 330.00374 * 13 11 9 17 17 C 1.46927 * 118.73958 * 306.38691 * 8 7 6 18 18 C 1.53050 * 109.45597 * 153.13985 * 5 4 2 19 19 C 1.50693 * 109.47313 * 119.99655 * 2 1 3 20 20 C 1.38386 * 120.00763 * 275.00110 * 19 2 1 21 21 N 1.32118 * 120.00133 * 179.97438 * 20 19 2 22 22 C 1.32153 * 120.00327 * 0.02562 * 21 20 19 23 23 C 1.38346 * 119.99735 * 0.24460 * 22 21 20 24 24 N 1.32126 * 119.99747 * 94.97881 * 19 2 1 25 25 H 1.09000 * 109.47097 * 55.74001 * 1 2 3 26 26 H 1.08993 * 109.46993 * 175.74159 * 1 2 3 27 27 H 1.09000 * 109.46914 * 295.74439 * 1 2 3 28 28 H 1.00895 * 111.00195 * 276.18089 * 4 2 1 29 29 H 1.08997 * 109.46125 * 33.17512 * 5 4 2 30 30 H 1.08997 * 109.49621 * 298.56820 * 6 5 4 31 31 H 1.08997 * 109.49292 * 58.66334 * 6 5 4 32 32 H 1.08993 * 109.58860 * 294.84938 * 7 6 5 33 33 H 1.09006 * 109.70041 * 174.49467 * 7 6 5 34 34 H 0.96999 * 120.00238 * 179.97438 * 12 11 9 35 35 H 1.08995 * 109.58547 * 293.82426 * 17 8 7 36 36 H 1.08994 * 109.70557 * 173.46396 * 17 8 7 37 37 H 1.08994 * 109.49372 * 301.33778 * 18 5 4 38 38 H 1.08996 * 109.49348 * 61.40400 * 18 5 4 39 39 H 1.08007 * 119.99785 * 359.95469 * 20 19 2 40 40 H 1.07997 * 120.00229 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.99443 * 179.72597 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.3392 -0.1849 -1.5985 6 6 3.1633 1.0348 -2.5059 7 6 4.5411 1.5820 -2.8919 8 7 5.3315 0.4960 -3.4873 9 6 5.9111 0.6489 -4.7186 10 1 5.4118 1.2266 -5.4823 11 6 7.1402 0.0613 -4.9848 12 7 7.8854 -0.3831 -3.9951 13 14 7.7366 -0.0985 -6.7478 14 1 8.5140 1.1111 -7.1190 15 1 8.6013 -1.2995 -6.8709 16 1 6.5689 -0.2341 -7.6551 17 6 5.4878 -0.7574 -2.7368 18 6 4.0994 -1.2785 -2.3526 19 6 2.0324 -0.7103 1.2304 20 6 2.1646 -0.0200 2.4225 21 7 2.6046 -0.6430 3.5013 22 6 2.9189 -1.9252 3.4420 23 6 2.7920 -2.6140 2.2489 24 7 2.3462 -1.9924 1.1712 25 1 -0.3633 0.5785 -0.8494 26 1 -0.3633 -1.0248 -0.0763 27 1 -0.3633 0.4464 0.9257 28 1 2.0446 -1.6908 -1.0558 29 1 3.9019 0.1017 -0.7101 30 1 2.6223 0.7435 -3.4062 31 1 2.6015 1.8042 -1.9763 32 1 5.0475 1.9573 -2.0026 33 1 4.4265 2.3895 -3.6151 34 1 8.7441 -0.7940 -4.1812 35 1 6.0713 -0.5729 -1.8349 36 1 5.9965 -1.4958 -3.3565 37 1 4.2038 -2.1554 -1.7138 38 1 3.5492 -1.5484 -3.2540 39 1 1.9084 1.0281 2.4709 40 1 3.2789 -2.4344 4.3237 41 1 3.0531 -3.6608 2.1994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116295092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:11 Heat of formation + Delta-G solvation = 45.035111 kcal Electronic energy + Delta-G solvation = -21685.083169 eV Core-core repulsion = 18599.429109 eV Total energy + Delta-G solvation = -3085.654059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.14549 -39.66686 -37.40978 -35.17907 -34.56662 -32.93994 -31.68318 -31.15836 -29.56958 -26.51990 -25.91682 -25.26175 -23.94677 -23.22853 -21.84968 -20.72421 -18.73998 -18.51966 -18.04880 -17.34540 -16.89758 -16.21016 -15.89756 -15.60406 -15.47053 -15.35134 -14.88825 -14.60270 -14.49381 -13.90449 -13.84507 -13.42785 -13.04588 -13.00363 -12.76925 -12.63521 -12.60933 -12.44575 -12.23175 -12.14116 -12.05751 -11.98344 -11.80469 -11.28316 -11.13516 -10.57623 -10.20849 -10.15558 -9.36682 -8.61595 -7.89586 -5.42405 -0.19943 0.14056 1.45750 1.47134 1.57584 2.50103 2.71091 2.91859 3.19803 3.27947 3.39640 3.61922 3.69400 3.78182 4.01354 4.07282 4.23932 4.35354 4.37153 4.46305 4.48406 4.54567 4.56178 4.69906 4.77332 4.85703 4.98239 5.01968 5.10993 5.12486 5.25593 5.33832 5.37192 5.43237 5.47281 5.64799 5.67796 6.11107 6.31083 6.41017 6.51026 6.81368 7.14154 7.82810 8.39546 9.16690 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.004171 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.250562 B = 6711.025102 C = 7193.652207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.135 3.865 3 H 0.101 0.899 4 N -0.669 5.669 5 C 0.113 3.887 6 C -0.103 4.103 7 C 0.140 3.860 8 N -0.608 5.608 9 C -0.270 4.270 10 H 0.063 0.937 11 C -0.044 4.044 12 N -0.935 5.935 13 Si 0.968 3.032 14 H -0.282 1.282 15 H -0.292 1.292 16 H -0.268 1.268 17 C 0.189 3.811 18 C -0.124 4.124 19 C 0.045 3.955 20 C 0.046 3.954 21 N -0.459 5.459 22 C 0.040 3.960 23 C 0.051 3.949 24 N -0.461 5.461 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.352 0.648 29 H 0.018 0.982 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.007 0.993 33 H 0.056 0.944 34 H 0.251 0.749 35 H -0.011 1.011 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.188 0.812 40 H 0.200 0.800 41 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.677 -2.157 13.565 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.023 3.977 3 H 0.119 0.881 4 N -0.300 5.300 5 C 0.004 3.996 6 C -0.143 4.143 7 C 0.015 3.985 8 N -0.332 5.332 9 C -0.401 4.401 10 H 0.081 0.919 11 C -0.240 4.240 12 N -0.580 5.580 13 Si 0.795 3.205 14 H -0.208 1.208 15 H -0.218 1.218 16 H -0.193 1.193 17 C 0.062 3.938 18 C -0.164 4.164 19 C -0.096 4.096 20 C -0.114 4.114 21 N -0.173 5.173 22 C -0.120 4.120 23 C -0.109 4.109 24 N -0.176 5.176 25 H 0.095 0.905 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.173 0.827 29 H 0.036 0.964 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.007 0.993 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.205 0.795 40 H 0.217 0.783 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -14.883 -1.821 13.112 19.918 hybrid contribution 1.606 -0.699 -0.043 1.753 sum -13.276 -2.521 13.069 18.799 Atomic orbital electron populations 1.21678 0.91134 1.02360 1.02992 1.20774 0.97226 0.96994 0.82732 0.88088 1.60753 1.25537 1.10453 1.33277 1.21148 0.88089 0.95091 0.95299 1.21848 0.96576 0.96699 0.99144 1.21091 0.91209 0.90721 0.95525 1.44217 1.59515 1.10991 1.18435 1.19459 0.99080 1.31882 0.89630 0.91908 1.25991 0.95491 1.01425 1.01071 1.70178 1.11548 1.44528 1.31782 0.85287 0.77962 0.77044 0.80209 1.20815 1.21790 1.19317 1.20371 0.92337 0.88118 0.92955 1.22123 0.97343 0.97247 0.99640 1.23398 0.96167 0.91726 0.98335 1.23898 0.96270 1.02564 0.88627 1.68475 1.07953 1.10516 1.30382 1.24289 0.96537 0.90822 1.00335 1.24279 0.94825 1.02938 0.88866 1.68011 1.08693 1.09465 1.31469 0.90526 0.93203 0.90749 0.82698 0.96372 0.92381 0.90400 0.97551 0.92521 0.94053 0.99276 0.93935 0.92468 0.92397 0.79524 0.78320 0.78659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 9.50 71.98 0.68 -1.48 16 2 C 0.13 2.97 2.67 44.17 0.12 3.09 16 3 H 0.10 2.12 7.22 -2.39 -0.02 2.10 16 4 N -0.67 -18.56 6.05 -473.15 -2.86 -21.42 16 5 C 0.11 3.86 2.25 44.95 0.10 3.96 16 6 C -0.10 -3.57 5.59 30.67 0.17 -3.40 16 7 C 0.14 6.05 6.52 86.36 0.56 6.62 16 8 N -0.61 -31.75 2.95 -699.11 -2.07 -33.81 16 9 C -0.27 -15.33 9.51 84.03 0.80 -14.53 16 10 H 0.06 3.47 7.87 -2.91 -0.02 3.45 16 11 C -0.04 -2.50 4.92 84.86 0.42 -2.08 16 12 N -0.94 -56.86 11.60 21.65 0.25 -56.61 16 13 Si 0.97 45.51 29.58 68.60 2.03 47.54 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 15 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 C 0.19 9.52 5.26 86.36 0.45 9.97 16 18 C -0.12 -4.92 5.34 30.68 0.16 -4.75 16 19 C 0.05 1.04 5.70 42.55 0.24 1.29 16 20 C 0.05 0.97 10.90 84.69 0.92 1.89 16 21 N -0.46 -10.07 10.50 -195.23 -2.05 -12.12 16 22 C 0.04 0.70 11.22 84.67 0.95 1.65 16 23 C 0.05 0.95 11.22 84.67 0.95 1.90 16 24 N -0.46 -11.13 9.00 -183.30 -1.65 -12.78 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.35 10.17 6.92 -89.70 -0.62 9.55 16 29 H 0.02 0.67 7.71 -2.39 -0.02 0.65 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.08 2.22 7.59 -2.39 -0.02 2.20 16 32 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.06 2.38 7.93 -2.38 -0.02 2.36 16 34 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 35 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 36 H 0.04 2.39 6.53 -2.39 -0.02 2.38 16 37 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.19 2.87 8.06 -2.91 -0.02 2.85 16 40 H 0.20 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.20 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -69.11 330.96 0.59 -68.53 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.39 Total: 16.57 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 6.54 Total: 4.11 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -8.37 Total: -136.74 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -69.11 0.59 -68.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116295092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.561 kcal (2) G-P(sol) polarization free energy of solvation -69.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds