Wall clock time and date at job start Mon Mar 30 2020 01:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00099 * 2 1 4 4 H 1.48494 * 109.47300 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46986 * 300.00458 * 3 2 1 6 6 H 1.48503 * 109.47140 * 59.99858 * 3 2 1 7 7 C 1.37875 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99968 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99761 * 0.27692 * 7 2 1 10 10 H 1.08997 * 109.50339 * 299.72382 * 9 7 2 11 11 C 1.53116 * 109.50290 * 59.80296 * 9 7 2 12 12 C 1.53123 * 109.15916 * 177.59619 * 11 9 7 13 13 C 1.53042 * 109.27772 * 302.34453 * 12 11 9 14 14 N 1.46843 * 109.52127 * 59.17823 * 13 12 11 15 15 C 1.38334 * 110.99719 * 174.16306 * 14 13 12 16 16 N 1.31575 * 126.07776 * 103.84912 * 15 14 13 17 17 C 1.33365 * 109.69778 * 179.97438 * 16 15 14 18 18 N 1.30588 * 109.11529 * 0.02562 * 17 16 15 19 19 N 1.34987 * 126.06975 * 283.54220 * 15 14 13 20 20 C 1.46504 * 126.83354 * 359.97438 * 19 15 14 21 21 C 1.53000 * 109.46990 * 265.41717 * 20 19 15 22 22 C 1.53000 * 117.49781 * 243.37170 * 21 20 19 23 23 C 1.53002 * 117.49693 * 174.70933 * 21 20 19 24 24 C 1.46845 * 111.23361 * 298.27480 * 14 13 12 25 25 H 0.97006 * 120.00339 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.52589 * 297.49543 * 11 9 7 27 27 H 1.08997 * 109.52550 * 57.62691 * 11 9 7 28 28 H 1.09001 * 109.50469 * 62.28509 * 12 11 9 29 29 H 1.08998 * 109.50323 * 182.36175 * 12 11 9 30 30 H 1.08998 * 109.46345 * 179.19398 * 13 12 11 31 31 H 1.08997 * 109.45740 * 299.16338 * 13 12 11 32 32 H 1.08000 * 125.44643 * 179.97438 * 17 16 15 33 33 H 1.08999 * 109.46634 * 25.41467 * 20 19 15 34 34 H 1.08990 * 109.47182 * 145.41450 * 20 19 15 35 35 H 1.09004 * 115.55191 * 29.04121 * 21 20 19 36 36 H 1.09003 * 117.49852 * 359.97438 * 22 21 20 37 37 H 1.08993 * 117.49715 * 145.02148 * 22 21 20 38 38 H 1.08999 * 117.49889 * 214.97724 * 23 21 20 39 39 H 1.08997 * 117.49914 * 359.97438 * 23 21 20 40 40 H 1.08999 * 109.43183 * 301.68774 * 24 14 13 41 41 H 1.09002 * 109.49850 * 181.71724 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 -0.0052 10 1 0.6242 -2.5613 0.8843 11 6 0.3720 -2.5764 -1.2565 12 6 -0.3437 -3.9298 -1.2851 13 6 0.6964 -5.0520 -1.2560 14 7 1.5112 -4.9346 -0.0401 15 6 2.3751 -6.0079 0.0834 16 7 3.6677 -5.9943 -0.1619 17 6 4.1808 -7.2044 0.0640 18 7 3.2277 -8.0069 0.4550 19 7 2.0427 -7.2539 0.4823 20 6 0.7102 -7.7272 0.8655 21 6 0.5515 -7.6297 2.3841 22 6 0.3478 -8.9336 3.1582 23 6 -0.8207 -7.9620 2.9737 24 6 2.2449 -3.6628 -0.0123 25 1 -0.4851 0.8401 0.0004 26 1 -0.3661 -1.7746 -1.2333 27 1 0.9940 -2.4733 -2.1456 28 1 -0.9956 -4.0152 -0.4157 29 1 -0.9387 -4.0076 -2.1950 30 1 0.1897 -6.0171 -1.2619 31 1 1.3391 -4.9742 -2.1329 32 1 5.2187 -7.4774 -0.0578 33 1 -0.0473 -7.1114 0.3807 34 1 0.5894 -8.7645 0.5534 35 1 1.1298 -6.8424 2.8677 36 1 0.3264 -9.8608 2.5855 37 1 0.7918 -9.0039 4.1511 38 1 -1.1449 -7.3936 3.8455 39 1 -1.6104 -8.2496 2.2798 40 1 2.8810 -3.5919 -0.8946 41 1 2.8623 -3.6185 0.8849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120945127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:50 Heat of formation + Delta-G solvation = 119.212067 kcal Electronic energy + Delta-G solvation = -21899.980409 eV Core-core repulsion = 18817.542904 eV Total energy + Delta-G solvation = -3082.437505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.86239 -38.28518 -37.69882 -33.99354 -33.26412 -32.02625 -30.02431 -29.52491 -27.27145 -25.08567 -23.77508 -22.54209 -22.23032 -21.35219 -21.01927 -20.16697 -18.66071 -17.40455 -16.39328 -15.83092 -15.57499 -15.28592 -14.59614 -14.35802 -14.15861 -13.91872 -13.57209 -13.26862 -12.96141 -12.65163 -12.47088 -11.96067 -11.91889 -11.72048 -11.57595 -10.98638 -10.85280 -10.71872 -10.66565 -10.28144 -10.13901 -9.96713 -9.79420 -9.67576 -9.51333 -9.49018 -9.22868 -8.77373 -8.36894 -8.09349 -6.01685 -4.07197 1.83103 2.33902 3.17554 3.29771 3.38118 3.42939 3.61906 3.97878 4.44286 4.50018 4.60686 4.75330 4.85907 4.93491 5.09657 5.22890 5.29948 5.40077 5.48529 5.51813 5.60903 5.72467 5.79511 5.91680 5.94683 6.06402 6.29054 6.35080 6.46547 6.49285 6.55500 6.69774 6.75510 6.85634 6.98751 7.24947 7.35374 7.67433 7.72919 7.97896 8.08571 8.38007 8.44658 8.96388 9.57602 11.04720 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021094 B = 0.004779 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.096248 B = 5857.602589 C = 6321.627702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.054 3.946 10 H 0.036 0.964 11 C -0.114 4.114 12 C -0.116 4.116 13 C 0.069 3.931 14 N -0.463 5.463 15 C 0.464 3.536 16 N -0.567 5.567 17 C 0.204 3.796 18 N -0.329 5.329 19 N -0.378 5.378 20 C 0.168 3.832 21 C -0.165 4.165 22 C -0.175 4.175 23 C -0.168 4.168 24 C 0.085 3.915 25 H 0.259 0.741 26 H 0.096 0.904 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.212 0.788 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.045 0.955 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.580 -15.307 1.041 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.035 3.965 10 H 0.054 0.946 11 C -0.152 4.152 12 C -0.154 4.154 13 C -0.058 4.058 14 N -0.188 5.188 15 C 0.099 3.901 16 N -0.301 5.301 17 C -0.100 4.100 18 N -0.158 5.158 19 N -0.171 5.171 20 C 0.045 3.955 21 C -0.184 4.184 22 C -0.212 4.212 23 C -0.205 4.205 24 C -0.040 4.040 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.229 0.771 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.064 0.936 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.844 -15.671 1.512 15.851 hybrid contribution 0.834 0.975 -0.459 1.362 sum -1.010 -14.696 1.053 14.768 Atomic orbital electron populations 1.69883 1.05855 1.26334 1.50748 1.24908 0.94834 0.99000 0.94988 0.86544 0.80255 0.83740 0.77527 1.19722 1.21067 1.21054 1.21124 0.93066 0.90223 1.50663 0.92453 1.18755 0.92547 0.90279 0.94969 0.94632 1.21718 1.00258 0.94505 0.98743 1.21724 0.96708 0.96001 1.00999 1.22191 0.95411 0.99656 0.88528 1.59011 1.21217 1.00758 1.37794 1.22321 0.89346 0.85523 0.92877 1.71071 1.06675 1.23771 1.28542 1.25734 1.00027 0.87199 0.97011 1.77940 0.90991 1.19220 1.27633 1.50113 1.08178 1.07568 1.51197 1.21252 0.79323 1.01117 0.93761 1.22552 1.01378 1.00480 0.94010 1.23062 1.02579 0.93736 1.01827 1.22973 0.91196 1.03097 1.03255 1.22385 0.96118 0.84351 1.01185 0.93059 0.88569 0.94592 0.91620 0.92481 0.92203 0.93856 0.77146 0.87882 0.89201 0.87173 0.88663 0.88807 0.88275 0.88445 0.93641 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 11.35 55.43 0.63 -23.94 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -13.73 8.57 -34.44 -0.30 -14.02 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.05 1.29 2.26 -91.69 -0.21 1.08 16 10 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.54 5.02 -26.61 -0.13 -2.67 16 12 C -0.12 -2.05 6.09 -26.65 -0.16 -2.21 16 13 C 0.07 1.15 5.20 -3.83 -0.02 1.13 16 14 N -0.46 -8.59 4.54 -174.98 -0.80 -9.39 16 15 C 0.46 8.35 6.79 -320.79 -2.18 6.17 16 16 N -0.57 -10.53 10.43 -15.21 -0.16 -10.68 16 17 C 0.20 3.18 13.02 -91.81 -1.20 1.98 16 18 N -0.33 -5.26 12.68 29.29 0.37 -4.89 16 19 N -0.38 -5.96 3.65 -61.93 -0.23 -6.18 16 20 C 0.17 2.07 6.68 -4.04 -0.03 2.04 16 21 C -0.16 -1.95 6.01 -90.62 -0.54 -2.50 16 22 C -0.18 -1.70 10.18 -26.69 -0.27 -1.97 16 23 C -0.17 -1.58 10.26 -26.69 -0.27 -1.85 16 24 C 0.09 1.84 4.11 -3.83 -0.02 1.82 16 25 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.10 2.40 6.15 -51.93 -0.32 2.08 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.84 6.60 -51.93 -0.34 0.50 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.21 2.37 8.06 -52.49 -0.42 1.94 16 33 H 0.10 1.21 6.40 -51.93 -0.33 0.88 16 34 H 0.09 0.95 7.87 -51.93 -0.41 0.54 16 35 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.09 0.83 8.03 -51.93 -0.42 0.42 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 41 H 0.07 1.53 8.10 -51.93 -0.42 1.11 16 LS Contribution 331.62 15.07 5.00 5.00 Total: -1.00 -29.35 331.62 -12.05 -41.40 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.43 Total: 2.11 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -5.42 Total: -9.37 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.18 Total: -55.09 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.35 -12.05 -41.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120945127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.617 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds