Wall clock time and date at job start Mon Mar 30 2020 01:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99586 * 2 1 4 4 H 1.48510 * 109.46938 * 269.99864 * 3 2 1 5 5 H 1.48497 * 109.47393 * 30.00083 * 3 2 1 6 6 H 1.48494 * 109.46983 * 150.00484 * 3 2 1 7 7 C 1.37879 * 120.00446 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99438 * 359.97438 * 7 2 1 9 9 C 1.50691 * 120.00043 * 179.97438 * 7 2 1 10 10 H 1.09007 * 109.50625 * 60.07463 * 9 7 2 11 11 C 1.53127 * 109.50410 * 299.99841 * 9 7 2 12 12 C 1.53118 * 109.16212 * 182.40724 * 11 9 7 13 13 C 1.53039 * 109.28001 * 57.65128 * 12 11 9 14 14 N 1.46846 * 109.52440 * 300.82393 * 13 12 11 15 15 C 1.38327 * 111.00131 * 185.84130 * 14 13 12 16 16 N 1.31579 * 126.06999 * 295.36804 * 15 14 13 17 17 C 1.33373 * 109.69462 * 180.02562 * 16 15 14 18 18 N 1.30587 * 109.11127 * 359.97438 * 17 16 15 19 19 N 1.34989 * 126.07707 * 115.06313 * 15 14 13 20 20 C 1.46497 * 126.82560 * 359.97438 * 19 15 14 21 21 C 1.52998 * 109.47174 * 95.23571 * 20 19 15 22 22 C 1.52994 * 117.49771 * 243.62054 * 21 20 19 23 23 C 1.52993 * 60.00255 * 252.50939 * 22 21 20 24 24 C 1.46842 * 111.19975 * 61.73871 * 14 13 12 25 25 H 0.96999 * 120.00398 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.51882 * 62.49978 * 11 9 7 27 27 H 1.09001 * 109.52053 * 302.30885 * 11 9 7 28 28 H 1.09006 * 109.50243 * 297.71348 * 12 11 9 29 29 H 1.09000 * 109.50635 * 177.59829 * 12 11 9 30 30 H 1.09001 * 109.46290 * 180.81026 * 13 12 11 31 31 H 1.09001 * 109.45220 * 60.83477 * 13 12 11 32 32 H 1.07996 * 125.44672 * 179.97438 * 17 16 15 33 33 H 1.09008 * 109.46904 * 215.23125 * 20 19 15 34 34 H 1.08997 * 109.47503 * 335.22735 * 20 19 15 35 35 H 1.08998 * 115.55045 * 29.32390 * 21 20 19 36 36 H 1.09003 * 117.49893 * 0.02562 * 22 21 20 37 37 H 1.09006 * 117.50514 * 145.01447 * 22 21 20 38 38 H 1.08999 * 117.49581 * 252.51267 * 23 22 21 39 39 H 1.08996 * 117.50325 * 107.48449 * 23 22 21 40 40 H 1.08996 * 109.46367 * 58.27465 * 24 14 13 41 41 H 1.09000 * 109.46245 * 178.24401 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 1 3.8758 -0.6815 0.8894 11 6 4.0222 -0.4719 -1.2512 12 6 5.5522 -0.5288 -1.2746 13 6 6.0041 -1.9906 -1.2431 14 7 5.4909 -2.6368 -0.0285 15 6 5.9882 -3.9214 0.0975 16 7 5.7507 -4.9274 -0.7166 17 6 6.3928 -6.0146 -0.2870 18 7 7.0482 -5.7210 0.8037 19 7 6.8080 -4.3642 1.0743 20 6 7.3388 -3.5850 2.1955 21 6 6.4465 -3.7835 3.4224 22 6 5.7125 -2.5571 3.9680 23 6 6.8989 -3.1429 4.7361 24 6 4.0226 -2.6364 -0.0066 25 1 -0.4851 0.8400 0.0004 26 1 3.6966 0.5681 -1.2297 27 1 3.6259 -0.9604 -2.1414 28 1 5.9491 -0.0064 -0.4041 29 1 5.9202 -0.0536 -2.1840 30 1 7.0932 -2.0342 -1.2452 31 1 5.6181 -2.5088 -2.1210 32 1 6.3737 -6.9830 -0.7647 33 1 8.3506 -3.9201 2.4241 34 1 7.3579 -2.5287 1.9272 35 1 5.9347 -4.7441 3.4809 36 1 5.8649 -1.6087 3.4526 37 1 4.7173 -2.7104 4.3855 38 1 6.6843 -3.6818 5.6589 39 1 7.8322 -2.5800 4.7263 40 1 3.6461 -3.1517 -0.8901 41 1 3.6726 -3.1491 0.8894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120945128.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:52 Heat of formation + Delta-G solvation = 109.398051 kcal Electronic energy + Delta-G solvation = -22218.511760 eV Core-core repulsion = 19135.648687 eV Total energy + Delta-G solvation = -3082.863073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.17478 -39.97718 -38.55435 -35.77321 -34.45606 -33.99130 -32.14479 -31.07017 -28.39188 -26.99452 -25.65546 -23.43929 -23.17690 -23.07633 -22.11282 -21.41333 -20.43990 -19.08156 -18.36104 -17.36898 -17.00139 -16.40593 -16.11335 -15.79920 -15.54645 -15.41868 -15.02611 -14.82236 -14.62320 -14.16953 -14.13181 -13.85660 -13.13467 -12.93077 -12.82982 -12.81282 -12.43238 -12.36170 -11.98005 -11.79313 -11.54825 -11.52105 -11.17083 -11.07626 -10.98241 -10.93617 -10.72185 -10.63596 -10.46205 -9.93947 -8.27969 -6.33426 0.45965 1.11259 1.34804 1.40690 1.51916 1.84785 2.35766 2.57609 2.87662 3.07687 3.50910 3.54398 3.74304 3.92311 3.96167 4.03424 4.05012 4.16486 4.20824 4.37471 4.45973 4.51064 4.54101 4.64466 4.74580 4.80187 4.88047 4.89315 5.01389 5.07674 5.12993 5.17012 5.22887 5.26148 5.27493 5.41405 5.49423 5.58784 5.68184 5.83950 6.20863 6.30893 6.72905 7.06196 7.32000 8.89025 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.006090 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.276210 B = 4596.399505 C = 5250.358171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.302 1.302 6 H -0.236 1.236 7 C -0.522 4.522 8 H 0.026 0.974 9 C 0.029 3.971 10 H 0.039 0.961 11 C -0.126 4.126 12 C -0.108 4.108 13 C 0.074 3.926 14 N -0.466 5.466 15 C 0.444 3.556 16 N -0.591 5.591 17 C 0.200 3.800 18 N -0.331 5.331 19 N -0.357 5.357 20 C 0.164 3.836 21 C -0.184 4.184 22 C -0.183 4.183 23 C -0.140 4.140 24 C 0.111 3.889 25 H 0.266 0.734 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.248 0.752 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.027 0.973 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.633 -3.775 3.894 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.230 1.230 6 H -0.159 1.159 7 C -0.560 4.560 8 H 0.044 0.956 9 C 0.009 3.991 10 H 0.057 0.943 11 C -0.164 4.164 12 C -0.146 4.146 13 C -0.053 4.053 14 N -0.192 5.192 15 C 0.078 3.922 16 N -0.323 5.323 17 C -0.104 4.104 18 N -0.160 5.160 19 N -0.149 5.149 20 C 0.043 3.957 21 C -0.204 4.204 22 C -0.220 4.220 23 C -0.177 4.177 24 C -0.016 4.016 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.059 0.941 32 H 0.264 0.736 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.124 0.876 39 H 0.138 0.862 40 H 0.045 0.955 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 19.941 -3.869 4.473 20.800 hybrid contribution -1.209 0.079 -0.626 1.364 sum 18.732 -3.790 3.847 19.495 Atomic orbital electron populations 1.70057 1.08447 1.28128 1.52505 1.25881 0.95403 1.03177 0.93893 0.85792 0.79454 0.78039 0.78882 1.19059 1.23016 1.15939 1.21212 0.91261 0.92920 1.50649 0.95552 1.19040 0.93006 0.91794 0.95217 0.94335 1.21976 0.95847 0.99321 0.99230 1.21647 0.94648 0.94576 1.03724 1.22152 0.99973 0.94974 0.88166 1.59095 1.10407 1.08882 1.40859 1.22011 0.91436 0.91577 0.87157 1.71047 1.29063 1.00765 1.31463 1.26452 0.92570 0.99604 0.91738 1.77946 1.26829 0.91430 1.19803 1.50497 1.35715 1.07509 1.21137 1.21575 0.97549 0.95462 0.81121 1.22444 1.04428 0.97993 0.95519 1.23093 0.97366 0.97195 1.04308 1.23069 0.99149 1.02003 0.93529 1.21733 0.81890 0.98682 0.99287 0.92534 0.93789 0.93163 0.90293 0.88634 0.88960 0.94074 0.73582 0.86684 0.86837 0.89713 0.88039 0.89856 0.87607 0.86185 0.95452 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 2 C 0.01 0.77 5.45 84.66 0.46 1.23 16 3 Si 0.95 43.38 24.35 68.60 1.67 45.05 16 4 H -0.26 -11.40 6.89 99.48 0.69 -10.72 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.24 -9.64 6.53 99.48 0.65 -8.99 16 7 C -0.52 -29.54 9.15 25.60 0.23 -29.31 16 8 H 0.03 1.68 7.99 -2.91 -0.02 1.66 16 9 C 0.03 1.29 1.85 -11.49 -0.02 1.27 16 10 H 0.04 1.72 7.21 -2.38 -0.02 1.71 16 11 C -0.13 -4.92 4.73 30.68 0.15 -4.78 16 12 C -0.11 -3.09 6.09 30.65 0.19 -2.91 16 13 C 0.07 2.14 5.39 86.33 0.47 2.61 16 14 N -0.47 -15.50 4.53 -707.53 -3.20 -18.70 16 15 C 0.44 14.59 6.33 260.78 1.65 16.24 16 16 N -0.59 -20.12 11.17 -202.02 -2.26 -22.37 16 17 C 0.20 5.58 13.02 180.76 2.35 7.93 16 18 N -0.33 -9.62 12.68 -61.24 -0.78 -10.40 16 19 N -0.36 -10.29 3.65 -349.86 -1.28 -11.57 16 20 C 0.16 3.57 6.74 86.38 0.58 4.15 16 21 C -0.18 -4.14 6.01 -10.80 -0.06 -4.21 16 22 C -0.18 -4.15 10.18 30.59 0.31 -3.84 16 23 C -0.14 -2.29 10.25 30.59 0.31 -1.98 16 24 C 0.11 4.59 4.57 86.33 0.39 4.99 16 25 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 26 H 0.04 1.77 3.34 -2.39 -0.01 1.77 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.09 2.21 8.10 -2.39 -0.02 2.19 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.25 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.11 2.29 7.76 -2.39 -0.02 2.28 16 35 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.10 2.34 8.03 -2.39 -0.02 2.32 16 37 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 2.15 8.10 -2.39 -0.02 2.13 16 Total: -1.00 -69.54 328.95 2.40 -67.14 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.93 Total: 18.50 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 7.01 Total: -8.59 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -7.21 Total: -122.10 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.67 Total: 45.05 kcal Total: -69.54 2.40 -67.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120945128.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.539 kcal (2) G-P(sol) polarization free energy of solvation -69.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds