Wall clock time and date at job start Mon Mar 30 2020 02:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36736 * 127.13891 * 2 1 4 4 C 1.50692 * 126.34966 * 0.03468 * 3 2 1 5 5 C 1.52998 * 109.47274 * 270.26269 * 4 3 2 6 6 C 1.50705 * 109.47668 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99255 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00402 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99983 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99999 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47314 * 60.00179 * 10 8 6 12 12 H 1.48505 * 109.47171 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47106 * 299.99553 * 10 8 6 14 14 N 1.30297 * 107.30401 * 180.27636 * 3 2 1 15 15 N 1.28532 * 110.05370 * 359.75934 * 14 3 2 16 16 C 1.31222 * 109.85909 * 359.97438 * 15 14 3 17 17 N 1.38579 * 126.47330 * 179.97438 * 16 15 14 18 18 C 1.47159 * 111.00405 * 295.83599 * 17 16 15 19 19 C 1.52977 * 108.60837 * 199.58890 * 18 17 16 20 20 C 1.52390 * 109.97324 * 305.51881 * 19 18 17 21 21 H 1.08999 * 114.97578 * 164.30380 * 20 19 18 22 22 C 1.52362 * 119.50691 * 310.38772 * 20 19 18 23 23 C 1.52407 * 118.98573 * 20.95495 * 20 19 18 24 24 H 1.08996 * 117.38100 * 143.24138 * 23 20 19 25 25 C 1.46743 * 110.99556 * 58.91676 * 17 16 15 26 26 H 1.08998 * 109.47061 * 275.43409 * 1 2 3 27 27 H 1.09001 * 109.46895 * 35.43132 * 1 2 3 28 28 H 1.08999 * 109.47522 * 155.43169 * 1 2 3 29 29 H 1.08999 * 109.47387 * 30.26160 * 4 3 2 30 30 H 1.08994 * 109.47396 * 150.26419 * 4 3 2 31 31 H 1.09004 * 109.47255 * 300.00403 * 5 4 3 32 32 H 1.08999 * 109.47221 * 59.99601 * 5 4 3 33 33 H 0.96999 * 120.00568 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.61546 * 319.32820 * 18 17 16 35 35 H 1.09002 * 109.61649 * 79.85273 * 18 17 16 36 36 H 1.09003 * 109.38678 * 65.66439 * 19 18 17 37 37 H 1.09001 * 109.39456 * 185.46573 * 19 18 17 38 38 H 1.08998 * 117.52279 * 216.06866 * 22 20 19 39 39 H 1.08997 * 117.52230 * 1.17718 * 22 20 19 40 40 H 1.08995 * 109.36745 * 300.73169 * 25 17 16 41 41 H 1.09007 * 109.36335 * 60.32978 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2906 1.0900 0.0000 4 6 1.8623 2.5348 0.0007 5 6 1.7103 3.0225 -1.4415 6 6 1.2814 4.4672 -1.4408 7 1 1.1326 4.9857 -0.5052 8 6 1.0801 5.1271 -2.6345 9 7 1.2618 4.4957 -3.7738 10 14 0.5491 6.9180 -2.6336 11 1 1.5740 7.7378 -1.9389 12 1 0.4027 7.3916 -4.0334 13 1 -0.7509 7.0485 -1.9279 14 7 3.5163 0.6479 -0.0060 15 7 3.5212 -0.6374 -0.0047 16 6 2.2887 -1.0879 0.0028 17 7 1.8976 -2.4173 0.0059 18 6 2.3158 -3.0931 -1.2326 19 6 1.4716 -4.3567 -1.4082 20 6 1.5705 -5.2263 -0.1607 21 1 0.8085 -6.0013 -0.0783 22 6 2.9410 -5.5551 0.4181 23 6 2.0026 -4.5864 1.1533 24 1 1.5270 -4.9455 2.0659 25 6 2.4346 -3.1206 1.1765 26 1 -0.3633 0.0973 1.0230 27 1 -0.3633 0.8374 -0.5958 28 1 -0.3634 -0.9346 -0.4273 29 1 0.9083 2.6307 0.5191 30 1 2.6148 3.1366 0.5103 31 1 2.6644 2.9265 -1.9599 32 1 0.9579 2.4207 -1.9511 33 1 1.1206 4.9600 -4.6136 34 1 2.1607 -2.4284 -2.0824 35 1 3.3695 -3.3636 -1.1640 36 1 0.4310 -4.0767 -1.5724 37 1 1.8353 -4.9183 -2.2687 38 1 3.0808 -6.5461 0.8499 39 1 3.8130 -5.1319 -0.0804 40 1 3.5231 -3.0645 1.1640 41 1 2.0608 -2.6481 2.0850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121495039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:57 Heat of formation + Delta-G solvation = 102.675443 kcal Electronic energy + Delta-G solvation = -21410.427817 eV Core-core repulsion = 18327.273230 eV Total energy + Delta-G solvation = -3083.154587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.59930 -39.89498 -35.62454 -34.79531 -33.74141 -31.78902 -31.38131 -28.67796 -27.33561 -26.04287 -25.16344 -24.20528 -21.92835 -21.57319 -20.98392 -20.00393 -18.53050 -17.33169 -16.56789 -16.23840 -16.09244 -15.45366 -14.89255 -14.50631 -14.25771 -14.12010 -13.53489 -13.24771 -13.05170 -12.88852 -12.74743 -12.47522 -12.26010 -11.70481 -11.55247 -11.31221 -11.14404 -10.99303 -10.97684 -10.71937 -10.53609 -10.21770 -10.04820 -9.96057 -9.86488 -9.68728 -9.25502 -8.75922 -8.42802 -8.41340 -6.06434 -4.10874 2.07649 2.51252 3.24240 3.30298 3.35356 3.37505 3.44563 3.83117 4.39915 4.40319 4.48618 4.65804 4.79514 4.92370 4.96287 5.03789 5.06211 5.29452 5.30459 5.32250 5.34582 5.48087 5.55113 5.58038 5.63614 5.67583 5.75669 5.85653 5.90450 5.94340 5.98691 6.32871 6.34844 6.45209 6.61828 6.67642 6.95466 7.47144 7.53664 7.67367 7.90662 8.28057 8.95011 9.15056 9.53823 11.04641 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.038830 B = 0.003497 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.925622 B = 8006.080458 C = 8190.202251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.466 5.466 3 C 0.216 3.784 4 C -0.032 4.032 5 C 0.032 3.968 6 C -0.525 4.525 7 H 0.059 0.941 8 C 0.060 3.940 9 N -0.892 5.892 10 Si 0.895 3.105 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.276 1.276 14 N -0.298 5.298 15 N -0.313 5.313 16 C 0.316 3.684 17 N -0.454 5.454 18 C 0.062 3.938 19 C -0.082 4.082 20 C -0.131 4.131 21 H 0.102 0.898 22 C -0.181 4.181 23 C -0.149 4.149 24 H 0.110 0.890 25 C 0.096 3.904 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.025 0.975 32 H 0.014 0.986 33 H 0.262 0.738 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.032 -19.258 8.183 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.158 5.158 3 C -0.051 4.051 4 C -0.072 4.072 5 C -0.006 4.006 6 C -0.564 4.564 7 H 0.077 0.923 8 C -0.142 4.142 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.202 1.202 14 N -0.138 5.138 15 N -0.158 5.158 16 C -0.040 4.040 17 N -0.179 5.179 18 C -0.066 4.066 19 C -0.120 4.120 20 C -0.149 4.149 21 H 0.120 0.880 22 C -0.219 4.219 23 C -0.167 4.167 24 H 0.128 0.872 25 C -0.031 4.031 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.074 -19.253 8.012 20.956 hybrid contribution -1.012 0.883 -0.125 1.349 sum -3.086 -18.369 7.887 20.228 Atomic orbital electron populations 1.22017 0.75382 1.05275 1.03596 1.46201 1.08876 1.05987 1.54733 1.25660 0.86321 0.92534 1.00567 1.20459 1.00933 0.82505 1.03288 1.19068 0.97846 0.95917 0.87788 1.21102 1.46670 0.96015 0.92569 0.92309 1.25010 0.95359 0.98314 0.95555 1.69960 1.48888 1.36879 0.97366 0.86606 0.79173 0.84914 0.77018 1.20072 1.21277 1.20192 1.74046 1.17759 1.02052 1.19960 1.74483 1.17101 1.04497 1.19686 1.22138 0.86322 0.87887 1.07684 1.58848 1.58823 0.95743 1.04523 1.22255 0.98280 0.95471 0.90571 1.20969 1.01108 0.93887 0.96062 1.21878 0.97974 1.01034 0.94028 0.87988 1.23210 0.94139 1.00290 1.04213 1.22306 1.04459 0.92960 0.97011 0.87165 1.21613 0.98406 0.91285 0.91818 0.90649 0.88637 0.89029 0.91102 0.89221 0.95626 0.96770 0.92787 0.90277 0.92724 0.90459 0.90585 0.88688 0.88589 0.92415 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 10.88 59.85 0.65 1.70 16 2 N -0.47 -8.02 3.21 -121.46 -0.39 -8.41 16 3 C 0.22 4.36 7.32 -154.02 -1.13 3.23 16 4 C -0.03 -0.65 5.46 -27.89 -0.15 -0.80 16 5 C 0.03 0.81 4.96 -27.88 -0.14 0.67 16 6 C -0.53 -14.32 9.11 -34.44 -0.31 -14.63 16 7 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 10 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 N -0.30 -6.57 12.18 32.99 0.40 -6.17 16 15 N -0.31 -6.33 12.10 30.31 0.37 -5.96 16 16 C 0.32 5.42 6.35 -318.87 -2.02 3.40 16 17 N -0.45 -6.10 4.61 -174.54 -0.81 -6.90 16 18 C 0.06 0.75 5.29 -3.69 -0.02 0.73 16 19 C -0.08 -0.75 6.22 -27.06 -0.17 -0.92 16 20 C -0.13 -1.09 6.13 -91.56 -0.56 -1.65 16 21 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 22 C -0.18 -1.48 9.65 -26.74 -0.26 -1.74 16 23 C -0.15 -1.35 6.32 -90.70 -0.57 -1.92 16 24 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 25 C 0.10 1.13 5.25 -4.00 -0.02 1.11 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 28 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 29 H 0.07 1.28 7.98 -51.93 -0.41 0.87 16 30 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.08 1.08 7.93 -51.93 -0.41 0.66 16 35 H 0.05 0.69 7.00 -51.93 -0.36 0.32 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.86 7.24 -51.93 -0.38 0.49 16 40 H 0.06 0.75 7.97 -51.93 -0.41 0.34 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 336.41 15.07 5.07 5.07 Total: -1.00 -32.25 336.41 -11.03 -43.28 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -6.59 Total: -2.05 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -4.80 Total: -9.26 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.31 Total: -53.16 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.25 -11.03 -43.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121495039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.955 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds