Wall clock time and date at job start Mon Mar 30 2020 02:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36736 * 127.13891 * 2 1 4 4 C 1.50692 * 126.34966 * 0.03468 * 3 2 1 5 5 C 1.52998 * 109.47274 * 270.26269 * 4 3 2 6 6 C 1.50705 * 109.47668 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99255 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00402 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99983 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99999 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47314 * 60.00179 * 10 8 6 12 12 H 1.48505 * 109.47171 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47106 * 299.99553 * 10 8 6 14 14 N 1.30297 * 107.30401 * 180.27636 * 3 2 1 15 15 N 1.28532 * 110.05370 * 359.75934 * 14 3 2 16 16 C 1.31222 * 109.85909 * 359.97438 * 15 14 3 17 17 N 1.38579 * 126.47330 * 179.97438 * 16 15 14 18 18 C 1.47159 * 111.00405 * 295.83599 * 17 16 15 19 19 C 1.52977 * 108.60837 * 199.58890 * 18 17 16 20 20 C 1.52390 * 109.97324 * 305.51881 * 19 18 17 21 21 H 1.08999 * 114.97578 * 164.30380 * 20 19 18 22 22 C 1.52362 * 119.50691 * 310.38772 * 20 19 18 23 23 C 1.52407 * 118.98573 * 20.95495 * 20 19 18 24 24 H 1.08996 * 117.38100 * 143.24138 * 23 20 19 25 25 C 1.46743 * 110.99556 * 58.91676 * 17 16 15 26 26 H 1.08998 * 109.47061 * 275.43409 * 1 2 3 27 27 H 1.09001 * 109.46895 * 35.43132 * 1 2 3 28 28 H 1.08999 * 109.47522 * 155.43169 * 1 2 3 29 29 H 1.08999 * 109.47387 * 30.26160 * 4 3 2 30 30 H 1.08994 * 109.47396 * 150.26419 * 4 3 2 31 31 H 1.09004 * 109.47255 * 300.00403 * 5 4 3 32 32 H 1.08999 * 109.47221 * 59.99601 * 5 4 3 33 33 H 0.96999 * 120.00568 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.61546 * 319.32820 * 18 17 16 35 35 H 1.09002 * 109.61649 * 79.85273 * 18 17 16 36 36 H 1.09003 * 109.38678 * 65.66439 * 19 18 17 37 37 H 1.09001 * 109.39456 * 185.46573 * 19 18 17 38 38 H 1.08998 * 117.52279 * 216.06866 * 22 20 19 39 39 H 1.08997 * 117.52230 * 1.17718 * 22 20 19 40 40 H 1.08995 * 109.36745 * 300.73169 * 25 17 16 41 41 H 1.09007 * 109.36335 * 60.32978 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2906 1.0900 0.0000 4 6 1.8623 2.5348 0.0007 5 6 1.7103 3.0225 -1.4415 6 6 1.2814 4.4672 -1.4408 7 1 1.1326 4.9857 -0.5052 8 6 1.0801 5.1271 -2.6345 9 7 1.2618 4.4957 -3.7738 10 14 0.5491 6.9180 -2.6336 11 1 1.5740 7.7378 -1.9389 12 1 0.4027 7.3916 -4.0334 13 1 -0.7509 7.0485 -1.9279 14 7 3.5163 0.6479 -0.0060 15 7 3.5212 -0.6374 -0.0047 16 6 2.2887 -1.0879 0.0028 17 7 1.8976 -2.4173 0.0059 18 6 2.3158 -3.0931 -1.2326 19 6 1.4716 -4.3567 -1.4082 20 6 1.5705 -5.2263 -0.1607 21 1 0.8085 -6.0013 -0.0783 22 6 2.9410 -5.5551 0.4181 23 6 2.0026 -4.5864 1.1533 24 1 1.5270 -4.9455 2.0659 25 6 2.4346 -3.1206 1.1765 26 1 -0.3633 0.0973 1.0230 27 1 -0.3633 0.8374 -0.5958 28 1 -0.3634 -0.9346 -0.4273 29 1 0.9083 2.6307 0.5191 30 1 2.6148 3.1366 0.5103 31 1 2.6644 2.9265 -1.9599 32 1 0.9579 2.4207 -1.9511 33 1 1.1206 4.9600 -4.6136 34 1 2.1607 -2.4284 -2.0824 35 1 3.3695 -3.3636 -1.1640 36 1 0.4310 -4.0767 -1.5724 37 1 1.8353 -4.9183 -2.2687 38 1 3.0808 -6.5461 0.8499 39 1 3.8130 -5.1319 -0.0804 40 1 3.5231 -3.0645 1.1640 41 1 2.0608 -2.6481 2.0850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121495039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:56 Heat of formation + Delta-G solvation = 85.324408 kcal Electronic energy + Delta-G solvation = -21411.180215 eV Core-core repulsion = 18327.273230 eV Total energy + Delta-G solvation = -3083.906984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.05678 -40.77807 -36.70985 -36.32762 -35.47769 -33.56932 -32.34441 -30.28682 -28.56627 -27.34507 -26.73968 -25.15336 -23.79234 -22.32812 -22.24592 -21.57424 -19.41499 -18.65873 -18.33932 -17.49311 -17.40949 -16.51837 -16.46154 -15.94691 -15.49848 -14.98960 -14.94801 -14.76474 -14.37888 -14.19716 -13.73376 -13.70538 -13.60047 -13.18740 -12.83922 -12.75247 -12.52318 -12.45675 -12.33540 -12.09239 -11.87880 -11.77569 -11.61864 -11.33375 -11.12904 -10.97757 -10.71786 -10.56708 -9.99323 -9.90507 -8.20487 -6.33103 0.65449 1.22359 1.43704 1.47012 1.54453 1.69858 2.42116 2.52961 2.93876 3.13836 3.44549 3.61805 3.71735 3.78268 3.88559 3.98575 4.04266 4.14293 4.22678 4.29627 4.34774 4.39996 4.61578 4.64115 4.66756 4.73366 4.75373 4.84786 4.85652 4.91922 5.02014 5.10394 5.18854 5.20403 5.30966 5.43310 5.54269 5.57737 5.59949 5.77802 6.14155 6.18414 6.82653 7.37117 7.63722 8.91483 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.038830 B = 0.003497 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.925622 B = 8006.080458 C = 8190.202251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.464 5.464 3 C 0.202 3.798 4 C -0.015 4.015 5 C 0.043 3.957 6 C -0.540 4.540 7 H 0.074 0.926 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.969 3.031 11 H -0.268 1.268 12 H -0.288 1.288 13 H -0.260 1.260 14 N -0.334 5.334 15 N -0.348 5.348 16 C 0.333 3.667 17 N -0.445 5.445 18 C 0.060 3.940 19 C -0.076 4.076 20 C -0.126 4.126 21 H 0.125 0.875 22 C -0.177 4.177 23 C -0.154 4.154 24 H 0.130 0.870 25 C 0.095 3.905 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.089 0.911 31 H -0.019 1.019 32 H -0.005 1.005 33 H 0.263 0.737 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.003 -20.323 9.449 22.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.155 5.155 3 C -0.067 4.067 4 C -0.055 4.055 5 C 0.005 3.995 6 C -0.578 4.578 7 H 0.092 0.908 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.793 3.207 11 H -0.193 1.193 12 H -0.213 1.213 13 H -0.184 1.184 14 N -0.175 5.175 15 N -0.192 5.192 16 C -0.024 4.024 17 N -0.171 5.171 18 C -0.067 4.067 19 C -0.114 4.114 20 C -0.144 4.144 21 H 0.143 0.857 22 C -0.214 4.214 23 C -0.172 4.172 24 H 0.148 0.852 25 C -0.032 4.032 26 H 0.122 0.878 27 H 0.106 0.894 28 H 0.129 0.871 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.000 1.000 32 H 0.014 0.986 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.057 0.943 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.060 -20.330 9.299 22.722 hybrid contribution -0.379 1.113 -0.539 1.293 sum -4.439 -19.217 8.760 21.581 Atomic orbital electron populations 1.22334 0.72797 1.06023 1.05519 1.46401 1.10323 1.05088 1.53723 1.25448 0.86552 0.93018 1.01700 1.20172 1.02430 0.82793 1.00083 1.18835 0.94740 0.95579 0.90375 1.21569 1.46101 0.96892 0.93259 0.90830 1.26000 0.95319 1.03291 0.95104 1.70116 1.50246 1.38997 0.98125 0.85444 0.79399 0.78813 0.77063 1.19292 1.21333 1.18448 1.73933 1.19279 1.03212 1.21028 1.74400 1.19093 1.03919 1.21773 1.22590 0.85641 0.89379 1.04812 1.59199 1.58231 0.93991 1.05710 1.22322 0.98700 0.96475 0.89243 1.20966 1.00683 0.92351 0.97381 1.21973 0.98608 1.01006 0.92809 0.85679 1.23246 0.93636 1.00805 1.03729 1.22311 1.05556 0.90923 0.98435 0.85172 1.21673 0.97331 0.93214 0.90959 0.87767 0.89362 0.87144 0.88243 0.89219 1.00014 0.98622 0.92783 0.92264 0.93583 0.89836 0.88956 0.86694 0.89960 0.94289 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.81 10.88 127.77 1.39 3.20 16 2 N -0.46 -15.88 3.21 -538.18 -1.73 -17.61 16 3 C 0.20 8.29 7.32 137.64 1.01 9.30 16 4 C -0.02 -0.62 5.46 29.84 0.16 -0.46 16 5 C 0.04 2.25 4.96 29.85 0.15 2.40 16 6 C -0.54 -29.58 9.11 25.60 0.23 -29.35 16 7 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 8 C 0.00 0.05 5.46 84.65 0.46 0.51 16 9 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 10 Si 0.97 43.12 29.54 68.60 2.03 45.14 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 12 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 14 N -0.33 -15.31 12.18 -49.54 -0.60 -15.91 16 15 N -0.35 -14.55 12.10 -58.00 -0.70 -15.25 16 16 C 0.33 11.51 6.35 260.11 1.65 13.16 16 17 N -0.45 -11.65 4.61 -706.12 -3.26 -14.91 16 18 C 0.06 1.43 5.29 86.25 0.46 1.89 16 19 C -0.08 -1.22 6.22 30.38 0.19 -1.03 16 20 C -0.13 -1.71 6.13 -11.40 -0.07 -1.78 16 21 H 0.13 1.22 8.14 -2.39 -0.02 1.21 16 22 C -0.18 -2.47 9.65 30.59 0.30 -2.18 16 23 C -0.15 -2.40 6.32 -10.84 -0.07 -2.47 16 24 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 25 C 0.10 2.15 5.25 86.28 0.45 2.61 16 26 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.09 2.32 8.07 -2.39 -0.02 2.30 16 28 H 0.11 2.27 8.11 -2.39 -0.02 2.25 16 29 H 0.10 3.48 7.98 -2.39 -0.02 3.46 16 30 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 31 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 32 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.26 15.08 8.31 -92.71 -0.77 14.30 16 34 H 0.06 1.65 7.93 -2.39 -0.02 1.63 16 35 H 0.05 1.18 7.00 -2.39 -0.02 1.16 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.39 7.24 -2.39 -0.02 1.38 16 40 H 0.04 1.03 7.97 -2.39 -0.02 1.01 16 41 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -71.97 336.41 3.34 -68.63 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.00 Total: 10.49 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 6.31 Total: -4.18 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -6.01 Total: -120.08 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -71.97 3.34 -68.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121495039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.959 kcal (2) G-P(sol) polarization free energy of solvation -71.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds