Wall clock time and date at job start Mon Mar 30 2020 02:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.08993 * 109.47117 * 317.11049 * 3 2 1 5 5 C 1.52993 * 109.47053 * 77.11524 * 3 2 1 6 6 N 1.46902 * 109.46896 * 197.11219 * 3 2 1 7 7 C 1.46904 * 110.99806 * 298.95675 * 6 3 2 8 8 C 1.38572 * 110.99864 * 174.99930 * 6 3 2 9 9 N 1.31215 * 126.47145 * 66.54982 * 8 6 3 10 10 N 1.28531 * 109.85991 * 179.82158 * 9 8 6 11 11 C 1.30291 * 110.05454 * 0.44503 * 10 9 8 12 12 C 1.50696 * 126.35067 * 179.76605 * 11 10 9 13 13 C 1.53003 * 109.46960 * 269.95914 * 12 11 10 14 14 C 1.50702 * 109.47204 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99777 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00169 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99956 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99977 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47280 * 89.99665 * 18 16 14 20 20 H 1.48504 * 109.46764 * 209.99985 * 18 16 14 21 21 H 1.48502 * 109.46921 * 329.99516 * 18 16 14 22 22 N 1.36451 * 126.47346 * 246.85029 * 8 6 3 23 23 C 1.46503 * 127.14028 * 359.97438 * 22 8 6 24 24 C 1.52998 * 109.47133 * 84.84709 * 23 22 8 25 25 H 4.18736 * 15.04002 * 359.97438 * 4 2 1 26 26 H 1.09004 * 109.47083 * 299.99474 * 5 3 2 27 27 H 1.08997 * 109.47391 * 59.99294 * 5 3 2 28 28 H 1.09001 * 109.47044 * 179.97438 * 5 3 2 29 29 H 1.09002 * 109.47443 * 53.94742 * 7 6 3 30 30 H 1.09006 * 109.46761 * 173.94605 * 7 6 3 31 31 H 1.09001 * 109.47162 * 293.94242 * 7 6 3 32 32 H 1.08996 * 109.47002 * 29.95902 * 12 11 10 33 33 H 1.08993 * 109.47486 * 149.95947 * 12 11 10 34 34 H 1.08996 * 109.47253 * 299.99834 * 13 12 11 35 35 H 1.09003 * 109.47264 * 60.00215 * 13 12 11 36 36 H 0.97004 * 119.99857 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.46970 * 204.85172 * 23 22 8 38 38 H 1.09004 * 109.46333 * 324.85433 * 23 22 8 39 39 H 1.09000 * 109.47724 * 300.00521 * 24 23 22 40 40 H 1.08999 * 109.46926 * 60.00157 * 24 23 22 41 41 H 1.08996 * 109.47186 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.7521 0.6994 5 6 3.1561 -0.3208 -1.4061 6 7 3.1351 1.3246 0.4075 7 6 2.6840 2.3633 -0.5282 8 6 4.5156 1.3289 0.5267 9 7 5.3830 1.1835 -0.4471 10 7 6.5787 1.2426 0.0207 11 6 6.5453 1.4183 1.3113 12 6 7.7357 1.5336 2.2281 13 6 8.1266 0.1433 2.7336 14 6 9.3175 0.2585 3.6499 15 1 9.7518 1.2264 3.8520 16 6 9.8525 -0.8719 4.2304 17 7 9.3240 -2.0507 3.9839 18 14 11.3282 -0.7291 5.3668 19 1 10.8609 -0.5352 6.7629 20 1 12.1387 -1.9707 5.2839 21 1 12.1581 0.4321 4.9568 22 7 5.2298 1.4796 1.6796 23 6 4.6977 1.6686 3.0314 24 6 4.3790 0.3057 3.6492 25 1 -1.0500 -0.0003 0.0009 26 1 2.7933 -1.3032 -1.7085 27 1 2.7924 0.4320 -2.1055 28 1 4.2461 -0.3198 -1.4062 29 1 1.6000 2.3135 -0.6315 30 1 2.9679 3.3442 -0.1466 31 1 3.1495 2.2032 -1.5007 32 1 8.5726 1.9708 1.6837 33 1 7.4814 2.1700 3.0756 34 1 7.2897 -0.2939 3.2780 35 1 8.3811 -0.4931 1.8860 36 1 9.7002 -2.8459 4.3926 37 1 5.4384 2.1815 3.6449 38 1 3.7881 2.2673 2.9833 39 1 3.6384 -0.2073 3.0356 40 1 5.2886 -0.2931 3.6971 41 1 3.9827 0.4463 4.6548 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121759404.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:08 Heat of formation + Delta-G solvation = 137.392747 kcal Electronic energy + Delta-G solvation = -21676.067248 eV Core-core repulsion = 18594.418117 eV Total energy + Delta-G solvation = -3081.649132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.67101 -38.54782 -35.49760 -34.09574 -33.21594 -31.70874 -30.43090 -29.95780 -28.67729 -26.41895 -25.39388 -23.92520 -23.38409 -21.90037 -20.50870 -19.73014 -18.16118 -17.15794 -16.58727 -16.27276 -15.82570 -14.97856 -14.72447 -14.45942 -14.12245 -13.96615 -13.31502 -13.11506 -12.89602 -12.84806 -12.39074 -12.31710 -12.09230 -11.91294 -11.59380 -11.34665 -11.22557 -10.99184 -10.94822 -10.72934 -10.68000 -10.47298 -10.20147 -9.97271 -9.87082 -9.73219 -9.23678 -8.83350 -8.42548 -8.40946 -6.06857 -4.10830 1.97799 2.33071 2.66962 2.81030 3.22948 3.28373 3.35653 3.38825 3.84168 4.14800 4.40032 4.79350 4.86477 5.00668 5.01646 5.14298 5.16927 5.29356 5.31783 5.33328 5.50521 5.54645 5.62896 5.75832 5.77114 5.79318 5.87568 5.90131 6.24186 6.30832 6.34686 6.40974 6.45453 6.53878 6.67443 6.94462 7.39640 7.47044 7.55777 7.67557 7.90582 8.28036 8.95077 9.13384 9.53837 11.04147 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.028455 B = 0.004075 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.775491 B = 6870.304701 C = 7066.957862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 C 0.199 3.801 4 H 0.103 0.897 5 C -0.185 4.185 6 N -0.456 5.456 7 C 0.033 3.967 8 C 0.317 3.683 9 N -0.307 5.307 10 N -0.299 5.299 11 C 0.219 3.781 12 C -0.033 4.033 13 C 0.032 3.968 14 C -0.524 4.524 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 N -0.461 5.461 23 C 0.112 3.888 24 C -0.169 4.169 25 H 0.219 0.781 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.017 0.983 35 H 0.025 0.975 36 H 0.262 0.738 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.844 6.753 -4.292 18.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C 0.093 3.907 4 H 0.121 0.879 5 C -0.243 4.243 6 N -0.180 5.180 7 C -0.115 4.115 8 C -0.039 4.039 9 N -0.152 5.152 10 N -0.139 5.139 11 C -0.048 4.048 12 C -0.072 4.072 13 C -0.007 4.007 14 C -0.562 4.562 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 N -0.153 5.153 23 C -0.011 4.011 24 C -0.227 4.227 25 H 0.236 0.764 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.468 6.500 -5.160 18.441 hybrid contribution 0.212 -0.090 1.306 1.326 sum -16.256 6.410 -3.854 17.894 Atomic orbital electron populations 1.24847 0.95693 0.99370 1.01296 1.22534 0.93506 1.00918 0.99955 1.18573 0.84609 0.89677 0.97891 0.87900 1.22570 1.04540 1.02073 0.95137 1.58739 1.02848 1.05731 1.50725 1.22438 1.00872 0.93482 0.94668 1.21965 0.90356 1.07549 0.83998 1.74454 0.96148 1.19337 1.25228 1.74062 1.13617 1.19712 1.06533 1.25643 0.84973 1.00288 0.93901 1.20472 0.89388 1.03064 0.94314 1.19102 0.96523 0.88674 0.96357 1.21133 1.13897 0.93452 1.27748 0.92318 1.24998 0.97183 0.95309 0.96693 1.69969 1.41163 0.98068 1.43833 0.86568 0.82708 0.77657 0.80933 1.20673 1.21186 1.19730 1.46434 1.06777 1.53610 1.08525 1.21798 1.00382 0.99560 0.79367 1.22163 1.03446 0.96265 1.00847 0.76429 0.91754 0.91795 0.88666 0.90327 0.91171 0.92905 0.89256 0.91186 0.96477 0.95660 0.92873 0.88487 0.88997 0.92315 0.90446 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.80 19.25 29.55 0.57 -1.24 16 2 C -0.17 -1.92 11.31 -37.12 -0.42 -2.34 16 3 C 0.20 2.56 2.79 -70.50 -0.20 2.36 16 4 H 0.10 1.41 8.11 -51.93 -0.42 0.99 16 5 C -0.18 -2.35 8.37 37.15 0.31 -2.04 16 6 N -0.46 -6.16 4.76 -177.98 -0.85 -7.01 16 7 C 0.03 0.38 8.71 60.07 0.52 0.90 16 8 C 0.32 5.25 6.25 -318.89 -1.99 3.25 16 9 N -0.31 -5.85 9.66 30.31 0.29 -5.56 16 10 N -0.30 -6.33 12.18 32.99 0.40 -5.92 16 11 C 0.22 4.27 7.32 -154.01 -1.13 3.15 16 12 C -0.03 -0.65 5.52 -27.88 -0.15 -0.80 16 13 C 0.03 0.78 4.96 -27.88 -0.14 0.65 16 14 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 18 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 N -0.46 -7.70 2.81 -114.09 -0.32 -8.02 16 23 C 0.11 1.48 6.79 -4.04 -0.03 1.46 16 24 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 25 H 0.22 1.20 7.80 -54.09 -0.42 0.78 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.76 6.52 -51.93 -0.34 0.42 16 28 H 0.09 1.48 5.80 -51.93 -0.30 1.18 16 29 H 0.08 0.78 6.93 -51.93 -0.36 0.42 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.64 6.50 -51.93 -0.34 0.31 16 32 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 33 H 0.07 1.25 7.18 -51.93 -0.37 0.87 16 34 H 0.02 0.44 6.80 -51.93 -0.35 0.09 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.10 1.21 7.11 -51.93 -0.37 0.84 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.30 6.80 -51.93 -0.35 0.94 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 342.22 15.07 5.16 5.16 Total: -1.00 -31.43 342.22 -8.41 -39.84 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.13 Total: 0.31 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -2.68 Total: -9.39 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.26 Total: -51.87 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.43 -8.41 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121759404.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.235 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds