Wall clock time and date at job start Mon Mar 30 2020 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47308 * 31.72640 * 3 2 1 5 5 C 1.52995 * 109.47148 * 271.72380 * 3 2 1 6 6 N 1.46901 * 109.46949 * 151.72737 * 3 2 1 7 7 C 1.46907 * 110.99847 * 303.95489 * 6 3 2 8 8 C 1.38568 * 111.00192 * 179.97438 * 6 3 2 9 9 N 1.31220 * 126.47272 * 57.63574 * 8 6 3 10 10 N 1.28537 * 109.85874 * 179.82264 * 9 8 6 11 11 C 1.30297 * 110.05361 * 0.45184 * 10 9 8 12 12 C 1.50693 * 126.34579 * 179.75864 * 11 10 9 13 13 C 1.53001 * 109.47448 * 269.95770 * 12 11 10 14 14 C 1.50698 * 109.46972 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00579 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99876 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00156 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00334 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47687 * 89.99752 * 18 16 14 20 20 H 1.48501 * 109.47461 * 210.00240 * 18 16 14 21 21 H 1.48505 * 109.46685 * 330.00196 * 18 16 14 22 22 N 1.36458 * 126.47347 * 237.94612 * 8 6 3 23 23 C 1.46498 * 127.13579 * 359.97438 * 22 8 6 24 24 C 1.53006 * 109.47085 * 89.88230 * 23 22 8 25 25 H 4.18734 * 15.03994 * 0.02562 * 4 2 1 26 26 H 1.08998 * 109.47228 * 300.00308 * 5 3 2 27 27 H 1.09006 * 109.47186 * 60.00372 * 5 3 2 28 28 H 1.09003 * 109.47162 * 180.02562 * 5 3 2 29 29 H 1.08996 * 109.47310 * 66.34056 * 7 6 3 30 30 H 1.09005 * 109.46750 * 186.34538 * 7 6 3 31 31 H 1.08994 * 109.46890 * 306.34079 * 7 6 3 32 32 H 1.08996 * 109.47230 * 29.96239 * 12 11 10 33 33 H 1.08998 * 109.46801 * 149.95809 * 12 11 10 34 34 H 1.08996 * 109.47288 * 300.00433 * 13 12 11 35 35 H 1.09001 * 109.46892 * 60.00687 * 13 12 11 36 36 H 0.97000 * 120.00157 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.47292 * 209.88089 * 23 22 8 38 38 H 1.09000 * 109.47051 * 329.88363 * 23 22 8 39 39 H 1.08997 * 109.46940 * 300.00074 * 24 23 22 40 40 H 1.09000 * 109.47190 * 59.99365 * 24 23 22 41 41 H 1.08995 * 109.47353 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0098 -0.8732 -0.5404 5 6 3.1561 -0.0425 1.4418 6 7 3.1351 1.2207 -0.6560 7 6 2.5883 1.3435 -2.0140 8 6 4.5203 1.2542 -0.6731 9 7 5.3159 0.3535 -1.2000 10 7 6.5416 0.7054 -1.0382 11 6 6.6003 1.8373 -0.3954 12 6 7.8528 2.5794 -0.0063 13 6 8.3096 2.1178 1.3791 14 6 9.5625 2.8595 1.7678 15 1 9.9900 3.5877 1.0945 16 6 10.1631 2.6086 2.9833 17 7 9.6429 1.7216 3.8032 18 14 11.7157 3.5285 3.4656 19 1 11.3494 4.7750 4.1847 20 1 12.5441 2.6713 4.3512 21 1 12.4880 3.8705 2.2441 22 7 5.3148 2.2271 -0.1399 23 6 4.8805 3.4384 0.5605 24 6 4.7587 3.1460 2.0574 25 1 -1.0499 -0.0006 -0.0009 26 1 2.7923 0.8314 1.9822 27 1 2.7932 -0.9478 1.9286 28 1 4.2461 -0.0416 1.4418 29 1 1.5108 1.4982 -1.9592 30 1 3.0521 2.1921 -2.5170 31 1 2.7965 0.4315 -2.5733 32 1 8.6375 2.3747 -0.7345 33 1 7.6485 3.6498 0.0165 34 1 7.5249 2.3225 2.1073 35 1 8.5140 1.0473 1.3563 36 1 10.0657 1.5448 4.6581 37 1 5.6122 4.2309 0.4035 38 1 3.9126 3.7552 0.1722 39 1 4.0271 2.3535 2.2144 40 1 5.7266 2.8290 2.4456 41 1 4.4352 4.0470 2.5784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121759405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:10 Heat of formation + Delta-G solvation = 115.444031 kcal Electronic energy + Delta-G solvation = -21755.050778 eV Core-core repulsion = 18672.449878 eV Total energy + Delta-G solvation = -3082.600900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.07011 -39.42981 -36.85299 -35.85333 -34.41727 -33.46457 -31.77901 -31.37019 -30.30348 -27.39423 -26.45091 -25.43919 -24.63012 -23.74111 -21.76383 -21.26275 -19.06379 -18.67018 -18.16478 -17.63532 -17.02020 -16.53159 -16.13625 -16.00542 -15.53560 -15.05045 -14.76589 -14.51947 -14.24538 -14.06449 -13.69653 -13.57953 -13.30400 -13.07931 -12.90608 -12.83491 -12.79494 -12.61738 -12.41671 -12.32116 -11.83630 -11.82036 -11.67654 -11.50066 -11.27886 -11.23156 -11.08930 -10.53798 -10.01546 -9.93048 -8.18405 -6.30092 0.65685 1.14825 1.43853 1.45642 1.56324 1.70623 1.86444 1.88480 2.43354 2.75873 3.16062 3.28020 3.46020 3.70426 3.82361 3.96607 4.06510 4.07549 4.12286 4.30012 4.35640 4.47684 4.52344 4.61678 4.66035 4.71472 4.73380 4.79077 4.82549 4.92899 5.01033 5.07773 5.13829 5.22511 5.49846 5.51420 5.54675 5.64952 5.82207 6.16408 6.20387 6.64387 6.85714 7.39588 7.67749 8.93454 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.029318 B = 0.004166 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.811967 B = 6720.261090 C = 6992.354866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.222 4.222 3 C 0.206 3.794 4 H 0.064 0.936 5 C -0.136 4.136 6 N -0.452 5.452 7 C 0.038 3.962 8 C 0.343 3.657 9 N -0.345 5.345 10 N -0.333 5.333 11 C 0.204 3.796 12 C -0.017 4.017 13 C 0.042 3.958 14 C -0.538 4.538 15 H 0.071 0.929 16 C 0.003 3.997 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.269 1.269 20 H -0.288 1.288 21 H -0.261 1.261 22 N -0.457 5.457 23 C 0.106 3.894 24 C -0.168 4.168 25 H 0.258 0.742 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.029 0.971 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.004 0.996 35 H -0.020 1.020 36 H 0.262 0.738 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.060 0.940 40 H 0.038 0.962 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.475 4.008 -6.729 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.222 4.222 3 C 0.099 3.901 4 H 0.082 0.918 5 C -0.194 4.194 6 N -0.179 5.179 7 C -0.109 4.109 8 C -0.014 4.014 9 N -0.189 5.189 10 N -0.173 5.173 11 C -0.064 4.064 12 C -0.057 4.057 13 C 0.004 3.996 14 C -0.576 4.576 15 H 0.090 0.910 16 C -0.195 4.195 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.194 1.194 20 H -0.214 1.214 21 H -0.185 1.185 22 N -0.149 5.149 23 C -0.015 4.015 24 C -0.225 4.225 25 H 0.274 0.726 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.048 0.952 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.023 0.977 35 H -0.002 1.002 36 H 0.071 0.929 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.170 3.117 -7.022 20.652 hybrid contribution 0.814 0.339 0.786 1.181 sum -18.356 3.456 -6.236 19.692 Atomic orbital electron populations 1.25722 0.96262 0.96791 0.97594 1.22299 0.93276 1.03468 1.03186 1.18368 0.86184 0.89638 0.95866 0.91781 1.21808 0.99360 1.03901 0.94304 1.58900 0.98133 1.38985 1.21850 1.22484 1.01758 1.01674 0.84997 1.22232 0.91058 0.88655 0.99456 1.74398 0.97142 1.24533 1.22848 1.73953 1.12593 1.11578 1.19193 1.25380 0.87325 0.94910 0.98800 1.20178 0.88236 0.98203 0.99041 1.18887 0.95579 0.94698 0.90444 1.21585 1.10352 1.22973 1.02674 0.91046 1.25946 1.00988 0.96006 0.96580 1.70120 1.41985 1.34957 1.10232 0.85440 0.78836 0.78313 0.78420 1.19424 1.21428 1.18542 1.46587 1.05507 1.20496 1.42293 1.22133 1.03455 0.83222 0.92655 1.22207 1.02003 1.04017 0.94309 0.72592 0.90574 0.89782 0.95151 0.87709 0.90846 0.94411 0.89414 0.88449 0.97741 1.00187 0.92881 0.87424 0.86037 0.92144 0.94270 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 19.25 74.32 1.43 -0.66 16 2 C -0.22 -4.53 11.27 31.13 0.35 -4.18 16 3 C 0.21 5.28 2.44 43.11 0.11 5.38 16 4 H 0.06 1.84 8.06 -2.39 -0.02 1.83 16 5 C -0.14 -3.65 8.60 71.98 0.62 -3.03 16 6 N -0.45 -11.86 4.64 -717.01 -3.33 -15.19 16 7 C 0.04 0.80 9.10 127.69 1.16 1.97 16 8 C 0.34 11.48 5.01 260.11 1.30 12.79 16 9 N -0.35 -14.03 12.09 -58.01 -0.70 -14.73 16 10 N -0.33 -14.90 12.18 -49.54 -0.60 -15.50 16 11 C 0.20 8.23 7.32 137.63 1.01 9.24 16 12 C -0.02 -0.69 5.53 29.85 0.16 -0.52 16 13 C 0.04 2.18 4.96 29.85 0.15 2.33 16 14 C -0.54 -29.25 9.11 25.60 0.23 -29.02 16 15 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 16 C 0.00 0.16 5.46 84.65 0.46 0.62 16 17 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 18 Si 0.97 43.04 29.54 68.60 2.03 45.06 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 22 N -0.46 -15.20 2.81 -514.86 -1.45 -16.65 16 23 C 0.11 2.65 6.74 86.38 0.58 3.23 16 24 C -0.17 -4.45 10.24 71.98 0.74 -3.71 16 25 H 0.26 1.31 7.80 -4.42 -0.03 1.27 16 26 H 0.08 1.89 6.75 -2.39 -0.02 1.87 16 27 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.03 1.02 7.22 -2.39 -0.02 1.00 16 29 H 0.10 1.73 7.25 -2.39 -0.02 1.71 16 30 H 0.07 1.52 8.05 -2.38 -0.02 1.50 16 31 H 0.04 0.87 8.12 -2.39 -0.02 0.85 16 32 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 33 H 0.10 3.38 7.26 -2.39 -0.02 3.36 16 34 H 0.00 0.24 6.25 -2.39 -0.01 0.22 16 35 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.11 2.42 7.25 -2.39 -0.02 2.40 16 38 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.06 1.61 6.24 -2.39 -0.01 1.59 16 40 H 0.04 1.37 6.25 -2.39 -0.01 1.36 16 41 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -71.84 344.14 5.54 -66.29 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.01 Total: 12.13 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 8.31 Total: -5.57 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -5.80 Total: -117.92 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -71.84 5.54 -66.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121759405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.739 kcal (2) G-P(sol) polarization free energy of solvation -71.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds