Wall clock time and date at job start Mon Mar 30 2020 02:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38407 * 119.99878 * 2 1 4 4 N 1.32517 * 119.21725 * 359.97438 * 3 2 1 5 5 C 1.32257 * 120.73580 * 180.02562 * 4 3 2 6 6 C 1.38624 * 119.20088 * 0.02562 * 5 4 3 7 7 C 1.38580 * 118.55826 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.40210 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.47107 * 95.00171 * 8 7 6 10 10 C 1.46843 * 111.00049 * 294.21372 * 9 8 7 11 11 C 1.53043 * 109.52446 * 174.16274 * 10 9 8 12 12 C 1.53115 * 109.28035 * 59.17281 * 11 10 9 13 13 C 1.53119 * 109.16391 * 302.35079 * 12 11 10 14 14 H 1.09002 * 109.53620 * 297.69125 * 13 12 11 15 15 C 1.50700 * 109.50789 * 177.59456 * 13 12 11 16 16 H 1.07998 * 120.00243 * 240.19782 * 15 13 12 17 17 C 1.37882 * 119.99823 * 60.19159 * 15 13 12 18 18 N 1.31509 * 119.99730 * 0.02562 * 17 15 13 19 19 Si 1.86791 * 119.99835 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47122 * 90.00191 * 19 17 15 21 21 H 1.48496 * 109.47408 * 210.00092 * 19 17 15 22 22 H 1.48505 * 109.47369 * 330.00430 * 19 17 15 23 23 C 1.46842 * 111.00041 * 169.99728 * 9 8 7 24 24 N 1.32295 * 119.20115 * 0.28109 * 7 6 5 25 25 H 1.09005 * 109.47366 * 60.00224 * 1 2 3 26 26 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47310 * 300.00303 * 1 2 3 28 28 H 0.96993 * 119.99986 * 179.97438 * 2 1 3 29 29 H 1.08004 * 120.40080 * 180.02562 * 5 4 3 30 30 H 1.08004 * 120.72334 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47152 * 335.00258 * 8 7 6 32 32 H 1.09001 * 109.46980 * 215.00359 * 8 7 6 33 33 H 1.09004 * 109.46019 * 294.17499 * 10 9 8 34 34 H 1.08999 * 109.46883 * 54.14319 * 10 9 8 35 35 H 1.09007 * 109.49669 * 299.23395 * 11 10 9 36 36 H 1.08996 * 109.50102 * 179.12000 * 11 10 9 37 37 H 1.08996 * 109.52692 * 182.44132 * 12 11 10 38 38 H 1.09007 * 109.52268 * 62.25145 * 12 11 10 39 39 H 0.97006 * 119.99707 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.46877 * 305.85973 * 23 9 8 41 41 H 1.09002 * 109.46302 * 65.82604 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1570 1.1987 0.0000 4 7 1.4788 2.3371 -0.0005 5 6 2.1094 3.4996 -0.0010 6 6 3.4956 3.5171 -0.0016 7 6 4.1733 2.3083 -0.0010 8 6 5.6800 2.2788 -0.0010 9 7 6.1672 2.1491 1.3788 10 6 5.8358 3.3421 2.1682 11 6 6.2271 3.1131 3.6299 12 6 7.7286 2.8245 3.7121 13 6 8.0547 1.6069 2.8430 14 1 7.5280 0.7333 3.2271 15 6 9.5397 1.3516 2.8713 16 1 10.1102 1.3808 1.9548 17 6 10.1699 1.0808 4.0674 18 7 9.4751 1.0448 5.1833 19 14 12.0106 0.7651 4.1026 20 1 12.7295 2.0494 4.2999 21 1 12.3331 -0.1593 5.2191 22 1 12.4328 0.1541 2.8165 23 6 7.6105 1.8795 1.4041 24 7 3.4817 1.1805 -0.0056 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.9499 -0.8400 0.0004 29 1 1.5512 4.4242 -0.0010 30 1 4.0356 4.4524 -0.0016 31 1 6.0616 3.2027 -0.4357 32 1 6.0268 1.4297 -0.5901 33 1 6.3820 4.2001 1.7762 34 1 4.7647 3.5337 2.1047 35 1 5.6710 2.2636 4.0266 36 1 5.9954 4.0046 4.2126 37 1 8.0038 2.6181 4.7464 38 1 8.2860 3.6892 3.3516 39 1 9.9185 0.8546 6.0249 40 1 7.8283 1.0089 0.7856 41 1 8.1484 2.7444 1.0157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140042618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:08 Heat of formation + Delta-G solvation = 55.434445 kcal Electronic energy + Delta-G solvation = -21357.863018 eV Core-core repulsion = 18272.659907 eV Total energy + Delta-G solvation = -3085.203111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.90751 -38.23961 -36.02936 -34.35459 -33.17137 -31.80810 -30.78221 -29.74562 -26.97981 -26.31070 -24.94477 -23.70574 -22.46046 -21.63754 -20.85519 -18.63881 -18.25222 -17.01282 -16.37015 -15.55374 -15.46646 -14.98354 -14.90819 -14.55369 -14.33285 -13.78573 -13.74823 -13.42080 -13.19406 -12.65554 -12.41470 -12.31847 -12.02276 -11.76978 -11.34410 -10.93342 -10.87875 -10.69709 -10.67560 -10.64271 -10.30791 -10.03102 -9.82391 -9.46920 -9.12994 -8.90503 -8.68917 -8.28799 -8.09852 -7.68380 -5.95367 -4.01563 1.24291 1.28691 2.88814 3.32215 3.39133 3.42095 3.92218 4.19826 4.42422 4.53973 4.69892 4.85017 5.05553 5.27524 5.29970 5.34752 5.38338 5.52262 5.62423 5.68223 5.80789 5.84362 5.87877 6.08451 6.26019 6.28900 6.39701 6.51981 6.72088 6.75759 6.87340 6.97403 7.08855 7.22970 7.39258 7.49386 7.63877 7.75318 7.80280 8.10714 8.19489 8.42479 8.49544 9.02518 9.62578 11.10689 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030700 B = 0.003722 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.841915 B = 7521.463358 C = 7748.719455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.707 5.707 3 C 0.560 3.440 4 N -0.575 5.575 5 C 0.186 3.814 6 C -0.287 4.287 7 C 0.242 3.758 8 C 0.098 3.902 9 N -0.527 5.527 10 C 0.059 3.941 11 C -0.116 4.116 12 C -0.110 4.110 13 C 0.055 3.945 14 H 0.035 0.965 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.891 3.109 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.070 3.930 24 N -0.550 5.550 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.415 0.585 29 H 0.164 0.836 30 H 0.140 0.860 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.025 0.975 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.030 0.970 39 H 0.259 0.741 40 H 0.062 0.938 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.341 3.579 -10.165 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.345 5.345 3 C 0.203 3.797 4 N -0.299 5.299 5 C 0.020 3.980 6 C -0.313 4.313 7 C 0.092 3.908 8 C -0.031 4.031 9 N -0.252 5.252 10 C -0.069 4.069 11 C -0.154 4.154 12 C -0.148 4.148 13 C 0.036 3.964 14 H 0.053 0.947 15 C -0.553 4.553 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.719 3.281 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.057 4.057 24 N -0.272 5.272 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.252 0.748 29 H 0.181 0.819 30 H 0.158 0.842 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -16.273 2.267 -9.768 19.114 hybrid contribution 1.984 1.069 -0.228 2.265 sum -14.289 3.336 -9.996 17.754 Atomic orbital electron populations 1.21435 0.78299 1.01713 1.02049 1.43819 1.06324 1.04125 1.80201 1.19350 0.85289 0.86638 0.88437 1.67853 1.41043 0.98012 1.22980 1.22813 0.91621 0.95152 0.88438 1.22419 0.96490 1.00122 1.12253 1.21325 0.96463 0.87116 0.85872 1.21012 0.87434 1.01824 0.92809 1.61943 1.17750 1.37346 1.08202 1.22130 0.98912 0.90370 0.95454 1.21665 1.00153 1.00046 0.93566 1.21655 0.90556 0.98083 1.04524 1.18666 0.95127 0.94611 0.87949 0.94711 1.21141 0.92937 1.47902 0.93336 0.92788 1.24935 0.97927 0.95277 0.95719 1.69897 1.35275 1.49317 0.98193 0.86623 0.85859 0.78023 0.77634 1.20815 1.21280 1.19951 1.22347 0.82981 0.98593 1.01745 1.67716 1.06275 1.32093 1.21136 0.92582 0.90852 0.92484 0.74836 0.81882 0.84219 0.93182 0.88946 0.95640 0.92421 0.92264 0.93523 0.89126 0.95093 0.93078 0.91969 0.96041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.94 10.68 59.85 0.64 1.57 16 2 N -0.71 -8.24 5.86 -69.11 -0.41 -8.64 16 3 C 0.56 8.25 8.43 -322.79 -2.72 5.53 16 4 N -0.58 -7.93 9.59 -13.93 -0.13 -8.07 16 5 C 0.19 2.20 11.30 -17.23 -0.19 2.01 16 6 C -0.29 -3.61 8.36 -39.31 -0.33 -3.94 16 7 C 0.24 3.67 5.66 -82.26 -0.47 3.20 16 8 C 0.10 1.52 5.33 -4.98 -0.03 1.50 16 9 N -0.53 -9.93 4.65 -236.11 -1.10 -11.03 16 10 C 0.06 1.06 5.22 -3.83 -0.02 1.04 16 11 C -0.12 -2.33 6.09 -26.65 -0.16 -2.50 16 12 C -0.11 -2.62 5.03 -26.61 -0.13 -2.75 16 13 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 14 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.51 -14.09 8.56 -34.44 -0.29 -14.38 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -25.46 11.36 55.43 0.63 -24.83 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.07 1.48 4.68 -3.84 -0.02 1.46 16 24 N -0.55 -8.95 10.40 -10.15 -0.11 -9.05 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.42 4.34 8.94 -40.82 -0.37 3.97 16 29 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.05 0.69 8.04 -51.93 -0.42 0.27 16 32 H 0.09 1.43 7.99 -51.93 -0.41 1.02 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.95 6.07 -51.93 -0.31 0.64 16 35 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.06 1.30 8.02 -51.93 -0.42 0.89 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 330.28 15.07 4.98 4.98 Total: -1.00 -31.09 330.28 -11.62 -42.71 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.44 Total: 2.12 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -4.03 Total: -4.44 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -1.11 Total: -61.62 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.09 -11.62 -42.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140042618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.143 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds