Wall clock time and date at job start Mon Mar 30 2020 02:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38407 * 119.99878 * 2 1 4 4 N 1.32517 * 119.21725 * 359.97438 * 3 2 1 5 5 C 1.32257 * 120.73580 * 180.02562 * 4 3 2 6 6 C 1.38624 * 119.20088 * 0.02562 * 5 4 3 7 7 C 1.38580 * 118.55826 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.40210 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.47107 * 95.00171 * 8 7 6 10 10 C 1.46843 * 111.00049 * 294.21372 * 9 8 7 11 11 C 1.53043 * 109.52446 * 174.16274 * 10 9 8 12 12 C 1.53115 * 109.28035 * 59.17281 * 11 10 9 13 13 C 1.53119 * 109.16391 * 302.35079 * 12 11 10 14 14 H 1.09002 * 109.53620 * 297.69125 * 13 12 11 15 15 C 1.50700 * 109.50789 * 177.59456 * 13 12 11 16 16 H 1.07998 * 120.00243 * 240.19782 * 15 13 12 17 17 C 1.37882 * 119.99823 * 60.19159 * 15 13 12 18 18 N 1.31509 * 119.99730 * 0.02562 * 17 15 13 19 19 Si 1.86791 * 119.99835 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47122 * 90.00191 * 19 17 15 21 21 H 1.48496 * 109.47408 * 210.00092 * 19 17 15 22 22 H 1.48505 * 109.47369 * 330.00430 * 19 17 15 23 23 C 1.46842 * 111.00041 * 169.99728 * 9 8 7 24 24 N 1.32295 * 119.20115 * 0.28109 * 7 6 5 25 25 H 1.09005 * 109.47366 * 60.00224 * 1 2 3 26 26 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47310 * 300.00303 * 1 2 3 28 28 H 0.96993 * 119.99986 * 179.97438 * 2 1 3 29 29 H 1.08004 * 120.40080 * 180.02562 * 5 4 3 30 30 H 1.08004 * 120.72334 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47152 * 335.00258 * 8 7 6 32 32 H 1.09001 * 109.46980 * 215.00359 * 8 7 6 33 33 H 1.09004 * 109.46019 * 294.17499 * 10 9 8 34 34 H 1.08999 * 109.46883 * 54.14319 * 10 9 8 35 35 H 1.09007 * 109.49669 * 299.23395 * 11 10 9 36 36 H 1.08996 * 109.50102 * 179.12000 * 11 10 9 37 37 H 1.08996 * 109.52692 * 182.44132 * 12 11 10 38 38 H 1.09007 * 109.52268 * 62.25145 * 12 11 10 39 39 H 0.97006 * 119.99707 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.46877 * 305.85973 * 23 9 8 41 41 H 1.09002 * 109.46302 * 65.82604 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1570 1.1987 0.0000 4 7 1.4788 2.3371 -0.0005 5 6 2.1094 3.4996 -0.0010 6 6 3.4956 3.5171 -0.0016 7 6 4.1733 2.3083 -0.0010 8 6 5.6800 2.2788 -0.0010 9 7 6.1672 2.1491 1.3788 10 6 5.8358 3.3421 2.1682 11 6 6.2271 3.1131 3.6299 12 6 7.7286 2.8245 3.7121 13 6 8.0547 1.6069 2.8430 14 1 7.5280 0.7333 3.2271 15 6 9.5397 1.3516 2.8713 16 1 10.1102 1.3808 1.9548 17 6 10.1699 1.0808 4.0674 18 7 9.4751 1.0448 5.1833 19 14 12.0106 0.7651 4.1026 20 1 12.7295 2.0494 4.2999 21 1 12.3331 -0.1593 5.2191 22 1 12.4328 0.1541 2.8165 23 6 7.6105 1.8795 1.4041 24 7 3.4817 1.1805 -0.0056 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.9499 -0.8400 0.0004 29 1 1.5512 4.4242 -0.0010 30 1 4.0356 4.4524 -0.0016 31 1 6.0616 3.2027 -0.4357 32 1 6.0268 1.4297 -0.5901 33 1 6.3820 4.2001 1.7762 34 1 4.7647 3.5337 2.1047 35 1 5.6710 2.2636 4.0266 36 1 5.9954 4.0046 4.2126 37 1 8.0038 2.6181 4.7464 38 1 8.2860 3.6892 3.3516 39 1 9.9185 0.8546 6.0249 40 1 7.8283 1.0089 0.7856 41 1 8.1484 2.7444 1.0157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140042618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:08 Heat of formation + Delta-G solvation = 36.012107 kcal Electronic energy + Delta-G solvation = -21358.705234 eV Core-core repulsion = 18272.659907 eV Total energy + Delta-G solvation = -3086.045326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.91976 -39.78707 -37.02561 -35.79960 -34.63725 -33.37573 -32.01984 -31.44415 -28.19230 -27.20744 -26.88866 -24.83498 -23.82107 -23.23075 -22.20685 -20.36818 -19.23531 -18.47133 -17.95735 -16.89724 -16.58588 -16.40160 -15.98459 -15.84676 -15.72706 -15.12105 -14.93398 -14.87841 -14.43986 -14.23507 -14.01929 -13.59732 -13.37023 -12.96806 -12.84344 -12.79918 -12.55057 -12.45971 -11.89752 -11.84043 -11.72172 -11.66535 -11.40353 -11.23071 -10.88163 -10.66099 -10.37473 -10.01404 -9.15782 -8.99225 -8.06631 -6.20956 0.19721 0.33727 1.42578 1.43346 1.53638 2.01903 2.43930 2.82647 3.20447 3.20589 3.30494 3.66752 3.85695 4.14625 4.21762 4.28316 4.39792 4.44201 4.46560 4.54424 4.62128 4.66798 4.70574 4.77329 4.88150 4.90101 4.96808 4.98106 5.08859 5.18102 5.37239 5.38474 5.51865 5.64798 5.93603 5.95406 6.12750 6.20889 6.21787 6.29472 6.45653 6.54609 6.92069 7.43934 7.47063 8.98217 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030700 B = 0.003722 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.841915 B = 7521.463358 C = 7748.719455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.707 5.707 3 C 0.541 3.459 4 N -0.584 5.584 5 C 0.189 3.811 6 C -0.282 4.282 7 C 0.220 3.780 8 C 0.102 3.898 9 N -0.545 5.545 10 C 0.067 3.933 11 C -0.110 4.110 12 C -0.102 4.102 13 C 0.053 3.947 14 H -0.010 1.010 15 C -0.534 4.534 16 H 0.055 0.945 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 0.956 3.044 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.268 1.268 23 C 0.085 3.915 24 N -0.584 5.584 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.050 0.950 28 H 0.417 0.583 29 H 0.205 0.795 30 H 0.166 0.834 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.030 0.970 39 H 0.259 0.741 40 H 0.057 0.943 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.161 5.123 -11.382 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.344 5.344 3 C 0.184 3.816 4 N -0.308 5.308 5 C 0.022 3.978 6 C -0.308 4.308 7 C 0.071 3.929 8 C -0.026 4.026 9 N -0.270 5.270 10 C -0.060 4.060 11 C -0.148 4.148 12 C -0.140 4.140 13 C 0.034 3.966 14 H 0.008 0.992 15 C -0.573 4.573 16 H 0.073 0.927 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.781 3.219 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.192 1.192 23 C -0.042 4.042 24 N -0.307 5.307 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.068 0.932 28 H 0.254 0.746 29 H 0.221 0.779 30 H 0.184 0.816 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -17.111 3.804 -11.002 20.696 hybrid contribution 2.153 0.564 0.147 2.231 sum -14.958 4.368 -10.855 18.991 Atomic orbital electron populations 1.21585 0.76556 1.03640 1.01601 1.44066 1.07446 1.03550 1.79366 1.19702 0.85192 0.87834 0.88894 1.67961 1.41195 0.98404 1.23236 1.23541 0.91817 0.95885 0.86564 1.22664 0.96939 1.00022 1.11202 1.21354 0.96080 0.88089 0.87336 1.20995 0.88191 1.02771 0.90613 1.61783 1.15911 1.38549 1.10762 1.22068 1.00237 0.90368 0.93373 1.21576 0.96907 1.00272 0.96064 1.21446 0.93355 0.97246 1.01970 1.18582 0.93800 0.93464 0.90761 0.99219 1.21527 0.94320 1.47971 0.93488 0.92694 1.25745 1.02413 0.95083 0.95383 1.70054 1.36991 1.49967 0.98645 0.85592 0.80470 0.78059 0.77736 1.20001 1.21141 1.19204 1.21983 0.84905 0.98669 0.98659 1.67661 1.07303 1.33199 1.22571 0.92609 0.87838 0.93169 0.74593 0.77856 0.81600 0.90668 0.89685 0.94010 0.90410 0.94346 0.91030 0.92591 0.95147 0.93147 0.92480 0.95383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.72 10.68 127.77 1.36 3.08 16 2 N -0.71 -15.95 5.86 -372.57 -2.18 -18.13 16 3 C 0.54 15.43 8.43 261.48 2.20 17.64 16 4 N -0.58 -14.95 9.59 -197.97 -1.90 -16.85 16 5 C 0.19 3.84 11.30 84.72 0.96 4.80 16 6 C -0.28 -6.21 8.36 22.44 0.19 -6.02 16 7 C 0.22 6.30 5.66 42.57 0.24 6.55 16 8 C 0.10 3.03 5.33 85.56 0.46 3.49 16 9 N -0.54 -20.08 4.65 -900.93 -4.19 -24.26 16 10 C 0.07 2.25 5.22 86.33 0.45 2.70 16 11 C -0.11 -4.37 6.09 30.65 0.19 -4.18 16 12 C -0.10 -4.94 5.03 30.67 0.15 -4.78 16 13 C 0.05 2.74 2.26 -11.49 -0.03 2.71 16 14 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 15 C -0.53 -29.87 8.56 25.60 0.22 -29.65 16 16 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 17 C 0.01 0.69 5.30 84.66 0.45 1.14 16 18 N -0.92 -54.16 11.36 21.45 0.24 -53.91 16 19 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C 0.08 3.61 4.68 86.33 0.40 4.01 16 24 N -0.58 -18.66 10.40 -186.03 -1.93 -20.59 16 25 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.42 8.61 8.94 -92.71 -0.83 7.78 16 29 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 31 H 0.08 1.84 8.04 -2.39 -0.02 1.82 16 32 H 0.08 2.60 7.99 -2.39 -0.02 2.58 16 33 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.08 2.33 6.07 -2.39 -0.01 2.32 16 35 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.06 3.09 6.17 -2.39 -0.01 3.07 16 38 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 40 H 0.06 2.43 8.02 -2.39 -0.02 2.41 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -69.22 330.28 -0.50 -69.71 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.19 Total: 16.50 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 7.25 Total: 1.48 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -9.96 Total: -133.75 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -69.22 -0.50 -69.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140042618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.722 kcal (2) G-P(sol) polarization free energy of solvation -69.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds