Wall clock time and date at job start Mon Mar 30 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.38986 * 120.00202 * 179.97438 * 2 1 3 5 5 C 1.39183 * 120.04270 * 4.72980 * 4 2 1 6 6 N 1.32033 * 120.07856 * 179.68137 * 5 4 2 7 7 C 1.32062 * 120.17131 * 0.61351 * 6 5 4 8 8 C 1.39137 * 120.08188 * 359.66556 * 7 6 5 9 9 N 1.38997 * 120.03648 * 179.97438 * 8 7 6 10 10 C 1.46495 * 120.00230 * 0.02562 * 9 8 7 11 11 H 1.08994 * 109.41329 * 324.99415 * 10 9 8 12 12 C 1.52961 * 109.41804 * 84.85701 * 10 9 8 13 13 C 1.53240 * 109.39912 * 183.77180 * 12 10 9 14 14 C 1.51260 * 108.48391 * 305.26644 * 13 12 10 15 15 C 1.37885 * 120.84971 * 231.36557 * 14 13 12 16 16 N 1.31507 * 120.00146 * 180.02562 * 15 14 13 17 17 Si 1.86795 * 119.99805 * 0.02562 * 15 14 13 18 18 H 1.48503 * 109.47073 * 89.99854 * 17 15 14 19 19 H 1.48497 * 109.47443 * 210.00117 * 17 15 14 20 20 H 1.48508 * 109.47202 * 330.00003 * 17 15 14 21 21 C 1.51267 * 118.30466 * 51.39022 * 14 13 12 22 22 C 1.52961 * 109.41027 * 205.13936 * 10 9 8 23 23 N 1.32728 * 120.04296 * 185.00111 * 4 2 1 24 24 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 25 25 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 26 26 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 27 27 H 1.08995 * 109.47445 * 89.99576 * 3 2 1 28 28 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 29 29 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 30 30 H 1.08001 * 119.95540 * 359.97438 * 5 4 2 31 31 H 1.08000 * 119.96322 * 179.68142 * 7 6 5 32 32 H 0.97001 * 119.99486 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.47549 * 303.68079 * 12 10 9 34 34 H 1.08998 * 109.47998 * 63.72244 * 12 10 9 35 35 H 1.08997 * 109.61501 * 185.58469 * 13 12 10 36 36 H 1.09009 * 109.84138 * 65.07761 * 13 12 10 37 37 H 0.96994 * 120.00431 * 180.02562 * 16 15 14 38 38 H 1.08998 * 109.63226 * 188.93454 * 21 14 13 39 39 H 1.09004 * 109.78765 * 68.45776 * 21 14 13 40 40 H 1.08996 * 109.48655 * 296.27165 * 22 10 9 41 41 H 1.09003 * 109.48768 * 56.31848 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1600 -1.2036 0.0005 5 6 1.4686 -2.4075 -0.0983 6 7 2.1285 -3.5511 -0.1042 7 6 3.4454 -3.5580 -0.0042 8 6 4.1431 -2.3588 0.1007 9 7 5.5290 -2.3673 0.2064 10 6 6.2560 -3.6391 0.2068 11 1 5.6626 -4.3954 0.7205 12 6 6.5060 -4.0824 -1.2357 13 6 7.1823 -5.4574 -1.2357 14 6 8.4300 -5.3781 -0.3843 15 6 9.6459 -5.8110 -0.8696 16 7 10.7200 -5.7348 -0.1147 17 14 9.7673 -6.5058 -2.5992 18 1 10.0578 -5.4068 -3.5548 19 1 10.8592 -7.5107 -2.6536 20 1 8.4811 -7.1522 -2.9645 21 6 8.3098 -4.8123 1.0134 22 6 7.5910 -3.4614 0.9319 23 7 3.4835 -1.2067 0.1007 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 2.3791 1.5835 1.0276 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5139 30 1 0.3913 -2.4060 -0.1750 31 1 3.9814 -4.4956 -0.0042 32 1 6.0149 -1.5309 0.2799 33 1 5.5559 -4.1456 -1.7663 34 1 7.1522 -3.3582 -1.7317 35 1 7.4517 -5.7327 -2.2554 36 1 6.5037 -6.2036 -0.8222 37 1 11.5754 -6.0390 -0.4561 38 1 9.3036 -4.6731 1.4389 39 1 7.7358 -5.4951 1.6399 40 1 8.2110 -2.7523 0.3835 41 1 7.4107 -3.0843 1.9386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157049527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:22 Heat of formation + Delta-G solvation = 52.776058 kcal Electronic energy + Delta-G solvation = -21361.591881 eV Core-core repulsion = 18276.273494 eV Total energy + Delta-G solvation = -3085.318387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 4.82 seconds Orbital eigenvalues (eV) -40.75487 -37.96696 -36.72650 -34.69148 -33.15968 -31.59367 -29.93592 -29.35362 -28.34017 -26.88394 -25.64014 -23.36263 -22.48856 -21.54393 -20.99271 -19.52572 -17.72334 -17.38596 -16.30300 -16.10033 -15.56925 -15.41382 -14.92486 -14.48811 -14.30181 -14.12824 -13.36527 -13.02396 -12.80087 -12.75110 -12.48899 -12.38097 -12.18399 -11.94159 -11.79081 -11.31526 -11.07116 -11.01158 -10.93935 -10.75533 -10.44296 -10.15487 -10.00373 -9.58895 -9.05677 -8.82747 -8.76067 -8.51400 -8.17454 -7.21859 -6.14989 -4.06347 1.50030 1.69770 2.70213 3.24703 3.34282 3.35884 3.49337 4.18023 4.35100 4.70549 4.77428 4.84203 5.03080 5.11931 5.13606 5.17890 5.39916 5.44796 5.49099 5.56706 5.62457 5.76142 5.78412 6.04340 6.35829 6.40984 6.49585 6.63658 6.66554 6.75630 6.79206 6.94552 7.04028 7.14138 7.35643 7.37956 7.59921 7.65182 7.73052 7.86759 7.98983 8.31913 8.39261 8.91293 9.49808 10.94472 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035604 B = 0.003781 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.237233 B = 7404.439579 C = 7643.536156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.615 5.615 3 C 0.101 3.899 4 C 0.400 3.600 5 C -0.095 4.095 6 N -0.372 5.372 7 C -0.074 4.074 8 C 0.413 3.587 9 N -0.703 5.703 10 C 0.160 3.840 11 H 0.076 0.924 12 C -0.120 4.120 13 C -0.014 4.014 14 C -0.491 4.491 15 C 0.077 3.923 16 N -0.889 5.889 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.266 1.266 21 C 0.014 3.986 22 C -0.113 4.113 23 N -0.572 5.572 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.153 0.847 31 H 0.164 0.836 32 H 0.400 0.600 33 H 0.037 0.963 34 H 0.055 0.945 35 H 0.032 0.968 36 H 0.020 0.980 37 H 0.265 0.735 38 H 0.061 0.939 39 H 0.007 0.993 40 H 0.056 0.944 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.292 11.042 0.248 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.330 5.330 3 C -0.042 4.042 4 C 0.161 3.839 5 C -0.262 4.262 6 N -0.084 5.084 7 C -0.243 4.243 8 C 0.171 3.829 9 N -0.331 5.331 10 C 0.056 3.944 11 H 0.094 0.906 12 C -0.159 4.159 13 C -0.052 4.052 14 C -0.510 4.510 15 C -0.126 4.126 16 N -0.526 5.526 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.191 1.191 21 C -0.024 4.024 22 C -0.152 4.152 23 N -0.305 5.305 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.171 0.829 31 H 0.181 0.819 32 H 0.235 0.765 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.025 0.975 40 H 0.075 0.925 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.085 10.943 0.259 19.456 hybrid contribution 0.413 0.217 -0.944 1.053 sum -15.672 11.160 -0.685 19.252 Atomic orbital electron populations 1.21696 0.78282 1.03029 1.01589 1.46165 1.05057 1.02915 1.78860 1.21528 0.97486 0.83943 1.01230 1.18959 0.88227 0.86890 0.89816 1.22536 1.00472 0.87082 1.16111 1.67983 1.08256 1.28191 1.03940 1.22819 0.90364 0.97857 1.13271 1.19118 0.86550 0.89239 0.87986 1.45240 1.01208 1.10450 1.76239 1.21205 0.92978 0.82597 0.97592 0.90649 1.22049 0.98712 1.00482 0.94652 1.19730 0.96370 0.91966 0.97120 1.20022 0.91536 1.40752 0.98726 1.24842 0.95239 0.95074 0.97430 1.69822 0.99491 1.46580 1.36721 0.86663 0.77585 0.79247 0.84901 1.20444 1.21623 1.19093 1.19339 0.97213 0.89823 0.96044 1.21929 0.94079 1.02222 0.96943 1.67272 1.07133 1.28534 1.27592 0.92874 0.90905 0.91098 0.93512 0.90557 0.91999 0.82935 0.81927 0.76525 0.94449 0.92605 0.94947 0.96128 0.92520 0.92021 0.97462 0.92541 0.94397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 10.07 59.85 0.60 1.29 16 2 N -0.61 -6.81 3.39 -189.56 -0.64 -7.45 16 3 C 0.10 0.96 10.43 59.84 0.62 1.59 16 4 C 0.40 5.80 7.36 -154.74 -1.14 4.66 16 5 C -0.10 -1.38 10.34 -17.11 -0.18 -1.55 16 6 N -0.37 -6.19 10.48 -12.70 -0.13 -6.33 16 7 C -0.07 -1.26 9.98 -17.12 -0.17 -1.43 16 8 C 0.41 6.98 7.64 -154.72 -1.18 5.80 16 9 N -0.70 -11.54 5.24 -53.89 -0.28 -11.82 16 10 C 0.16 2.89 2.04 -67.97 -0.14 2.75 16 11 H 0.08 1.38 6.46 -51.93 -0.34 1.04 16 12 C -0.12 -2.34 5.42 -26.63 -0.14 -2.49 16 13 C -0.01 -0.31 5.59 -27.48 -0.15 -0.46 16 14 C -0.49 -12.40 5.51 -98.93 -0.55 -12.94 16 15 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 16 N -0.89 -24.92 12.73 55.43 0.71 -24.22 16 17 Si 0.89 20.72 27.27 -169.99 -4.64 16.08 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.03 6.46 56.52 0.37 -5.67 16 21 C 0.01 0.32 5.97 -27.48 -0.16 0.16 16 22 C -0.11 -2.23 5.40 -26.63 -0.14 -2.37 16 23 N -0.57 -9.28 9.37 -11.43 -0.11 -9.39 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.49 6.39 -51.93 -0.33 0.15 16 26 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.85 7.47 -51.93 -0.39 0.47 16 29 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.15 1.73 6.26 -52.49 -0.33 1.40 16 31 H 0.16 2.74 6.13 -52.49 -0.32 2.42 16 32 H 0.40 6.17 8.73 -40.82 -0.36 5.81 16 33 H 0.04 0.69 7.73 -51.93 -0.40 0.29 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.03 0.73 4.78 -51.93 -0.25 0.48 16 36 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.06 1.60 7.07 -51.93 -0.37 1.24 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 322.83 15.07 4.86 4.86 Total: -1.00 -28.96 322.83 -9.11 -38.06 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.05 Total: 3.23 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -2.83 Total: -3.04 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.46 Total: -59.20 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.64 Total: 16.08 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.96 -9.11 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.839 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.82 seconds