Wall clock time and date at job start Mon Mar 30 2020 02:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.38986 * 120.00202 * 179.97438 * 2 1 3 5 5 C 1.39183 * 120.04270 * 4.72980 * 4 2 1 6 6 N 1.32033 * 120.07856 * 179.68137 * 5 4 2 7 7 C 1.32062 * 120.17131 * 0.61351 * 6 5 4 8 8 C 1.39137 * 120.08188 * 359.66556 * 7 6 5 9 9 N 1.38997 * 120.03648 * 179.97438 * 8 7 6 10 10 C 1.46495 * 120.00230 * 0.02562 * 9 8 7 11 11 H 1.08994 * 109.41329 * 324.99415 * 10 9 8 12 12 C 1.52961 * 109.41804 * 84.85701 * 10 9 8 13 13 C 1.53240 * 109.39912 * 183.77180 * 12 10 9 14 14 C 1.51260 * 108.48391 * 305.26644 * 13 12 10 15 15 C 1.37885 * 120.84971 * 231.36557 * 14 13 12 16 16 N 1.31507 * 120.00146 * 180.02562 * 15 14 13 17 17 Si 1.86795 * 119.99805 * 0.02562 * 15 14 13 18 18 H 1.48503 * 109.47073 * 89.99854 * 17 15 14 19 19 H 1.48497 * 109.47443 * 210.00117 * 17 15 14 20 20 H 1.48508 * 109.47202 * 330.00003 * 17 15 14 21 21 C 1.51267 * 118.30466 * 51.39022 * 14 13 12 22 22 C 1.52961 * 109.41027 * 205.13936 * 10 9 8 23 23 N 1.32728 * 120.04296 * 185.00111 * 4 2 1 24 24 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 25 25 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 26 26 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 27 27 H 1.08995 * 109.47445 * 89.99576 * 3 2 1 28 28 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 29 29 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 30 30 H 1.08001 * 119.95540 * 359.97438 * 5 4 2 31 31 H 1.08000 * 119.96322 * 179.68142 * 7 6 5 32 32 H 0.97001 * 119.99486 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.47549 * 303.68079 * 12 10 9 34 34 H 1.08998 * 109.47998 * 63.72244 * 12 10 9 35 35 H 1.08997 * 109.61501 * 185.58469 * 13 12 10 36 36 H 1.09009 * 109.84138 * 65.07761 * 13 12 10 37 37 H 0.96994 * 120.00431 * 180.02562 * 16 15 14 38 38 H 1.08998 * 109.63226 * 188.93454 * 21 14 13 39 39 H 1.09004 * 109.78765 * 68.45776 * 21 14 13 40 40 H 1.08996 * 109.48655 * 296.27165 * 22 10 9 41 41 H 1.09003 * 109.48768 * 56.31848 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1600 -1.2036 0.0005 5 6 1.4686 -2.4075 -0.0983 6 7 2.1285 -3.5511 -0.1042 7 6 3.4454 -3.5580 -0.0042 8 6 4.1431 -2.3588 0.1007 9 7 5.5290 -2.3673 0.2064 10 6 6.2560 -3.6391 0.2068 11 1 5.6626 -4.3954 0.7205 12 6 6.5060 -4.0824 -1.2357 13 6 7.1823 -5.4574 -1.2357 14 6 8.4300 -5.3781 -0.3843 15 6 9.6459 -5.8110 -0.8696 16 7 10.7200 -5.7348 -0.1147 17 14 9.7673 -6.5058 -2.5992 18 1 10.0578 -5.4068 -3.5548 19 1 10.8592 -7.5107 -2.6536 20 1 8.4811 -7.1522 -2.9645 21 6 8.3098 -4.8123 1.0134 22 6 7.5910 -3.4614 0.9319 23 7 3.4835 -1.2067 0.1007 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 2.3791 1.5835 1.0276 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5139 30 1 0.3913 -2.4060 -0.1750 31 1 3.9814 -4.4956 -0.0042 32 1 6.0149 -1.5309 0.2799 33 1 5.5559 -4.1456 -1.7663 34 1 7.1522 -3.3582 -1.7317 35 1 7.4517 -5.7327 -2.2554 36 1 6.5037 -6.2036 -0.8222 37 1 11.5754 -6.0390 -0.4561 38 1 9.3036 -4.6731 1.4389 39 1 7.7358 -5.4951 1.6399 40 1 8.2110 -2.7523 0.3835 41 1 7.4107 -3.0843 1.9386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157049527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:21 Heat of formation + Delta-G solvation = 35.424966 kcal Electronic energy + Delta-G solvation = -21362.344281 eV Core-core repulsion = 18276.273494 eV Total energy + Delta-G solvation = -3086.070787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.91444 -39.40070 -37.78014 -36.15065 -34.56957 -33.23137 -31.58704 -30.59784 -29.28711 -28.36142 -26.63073 -24.63605 -23.93058 -23.24746 -22.30359 -21.11797 -18.98826 -18.46677 -17.94435 -17.32488 -16.61699 -16.50411 -16.36743 -16.23444 -15.27863 -15.24109 -14.96447 -14.57653 -14.26788 -14.02936 -13.70274 -13.49655 -13.38139 -13.21324 -12.89644 -12.76159 -12.73996 -12.55815 -12.28220 -12.21564 -11.89951 -11.86005 -11.61332 -11.28928 -10.87046 -10.55809 -10.52306 -9.99320 -9.28824 -8.34261 -8.16002 -6.09679 0.33280 0.50587 1.39102 1.43521 1.51303 1.75366 2.29979 2.42122 2.99971 3.13301 3.67066 3.70409 3.80175 4.02696 4.17965 4.20547 4.35629 4.42232 4.51548 4.54761 4.62257 4.72280 4.82130 4.90338 4.94356 4.97339 4.97911 5.07655 5.07890 5.24155 5.26591 5.36087 5.59634 5.63688 5.72675 5.77183 5.84190 6.07767 6.24644 6.35252 6.61796 6.80894 6.96985 7.20985 7.48548 8.94750 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035604 B = 0.003781 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.237233 B = 7404.439579 C = 7643.536156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.610 5.610 3 C 0.098 3.902 4 C 0.393 3.607 5 C -0.089 4.089 6 N -0.388 5.388 7 C -0.099 4.099 8 C 0.405 3.595 9 N -0.700 5.700 10 C 0.175 3.825 11 H 0.076 0.924 12 C -0.111 4.111 13 C -0.016 4.016 14 C -0.498 4.498 15 C 0.023 3.977 16 N -0.930 5.930 17 Si 0.938 3.062 18 H -0.276 1.276 19 H -0.294 1.294 20 H -0.253 1.253 21 C 0.010 3.990 22 C -0.101 4.101 23 N -0.585 5.585 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.185 0.815 31 H 0.158 0.842 32 H 0.404 0.596 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.031 0.969 36 H 0.026 0.974 37 H 0.262 0.738 38 H 0.030 0.970 39 H 0.006 0.994 40 H 0.049 0.951 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.317 12.581 -0.428 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.324 5.324 3 C -0.044 4.044 4 C 0.151 3.849 5 C -0.257 4.257 6 N -0.100 5.100 7 C -0.266 4.266 8 C 0.164 3.836 9 N -0.330 5.330 10 C 0.071 3.929 11 H 0.094 0.906 12 C -0.150 4.150 13 C -0.054 4.054 14 C -0.517 4.517 15 C -0.175 4.175 16 N -0.570 5.570 17 Si 0.764 3.236 18 H -0.202 1.202 19 H -0.220 1.220 20 H -0.178 1.178 21 C -0.028 4.028 22 C -0.140 4.140 23 N -0.319 5.319 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.201 0.799 31 H 0.175 0.825 32 H 0.240 0.760 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.024 0.976 40 H 0.068 0.932 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.148 12.507 -0.423 22.875 hybrid contribution 1.144 -0.124 -0.675 1.334 sum -18.005 12.382 -1.098 21.879 Atomic orbital electron populations 1.22015 0.75734 1.04633 1.02998 1.46561 1.06640 1.02183 1.76998 1.21637 0.97215 0.83960 1.01624 1.19305 0.87887 0.88443 0.89218 1.23070 1.01838 0.86493 1.14344 1.67971 1.08199 1.29407 1.04466 1.22728 0.90793 0.97761 1.15350 1.19097 0.86407 0.89570 0.88525 1.44886 1.01270 1.09753 1.77065 1.20828 0.92178 0.83523 0.96349 0.90561 1.21904 0.98803 0.98510 0.95787 1.19745 0.95412 0.93829 0.96412 1.20630 0.92440 1.39088 0.99559 1.25567 0.95309 0.96018 1.00587 1.69954 0.99941 1.48759 1.38374 0.85854 0.77792 0.78626 0.81312 1.20169 1.22045 1.17773 1.19290 0.96067 0.92041 0.95386 1.21695 0.94460 0.99561 0.98252 1.67298 1.08143 1.28218 1.28208 0.91448 0.90326 0.88585 0.93188 0.92554 0.88828 0.79857 0.82478 0.75990 0.93074 0.93363 0.95085 0.95512 0.92846 0.95138 0.97588 0.93231 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 10.07 127.77 1.29 2.16 16 2 N -0.61 -11.51 3.39 -753.64 -2.55 -14.06 16 3 C 0.10 1.59 10.43 127.77 1.33 2.92 16 4 C 0.39 10.46 7.36 132.98 0.98 11.44 16 5 C -0.09 -2.34 10.34 84.89 0.88 -1.46 16 6 N -0.39 -12.34 10.48 -194.09 -2.03 -14.37 16 7 C -0.10 -3.30 9.98 84.87 0.85 -2.45 16 8 C 0.41 13.24 7.64 132.96 1.02 14.26 16 9 N -0.70 -22.31 5.24 -324.41 -1.70 -24.01 16 10 C 0.18 6.22 2.04 44.97 0.09 6.31 16 11 H 0.08 2.73 6.46 -2.39 -0.02 2.72 16 12 C -0.11 -4.23 5.42 30.66 0.17 -4.06 16 13 C -0.02 -0.69 5.59 30.11 0.17 -0.53 16 14 C -0.50 -25.34 5.51 -16.17 -0.09 -25.43 16 15 C 0.02 1.27 5.46 84.66 0.46 1.73 16 16 N -0.93 -53.84 12.73 21.45 0.27 -53.57 16 17 Si 0.94 42.81 27.27 68.60 1.87 44.68 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.25 -10.94 6.46 99.48 0.64 -10.30 16 21 C 0.01 0.49 5.97 30.11 0.18 0.67 16 22 C -0.10 -3.96 5.40 30.66 0.17 -3.79 16 23 N -0.58 -18.09 9.37 -190.06 -1.78 -19.87 16 24 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.08 0.72 6.39 -2.38 -0.02 0.71 16 26 H 0.10 0.53 8.07 -2.39 -0.02 0.51 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 1.16 7.47 -2.39 -0.02 1.14 16 29 H 0.09 0.92 8.07 -2.39 -0.02 0.90 16 30 H 0.18 3.48 6.26 -2.91 -0.02 3.46 16 31 H 0.16 5.23 6.13 -2.91 -0.02 5.21 16 32 H 0.40 12.09 8.73 -92.71 -0.81 11.28 16 33 H 0.05 1.82 7.73 -2.39 -0.02 1.80 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.03 1.35 4.78 -2.39 -0.01 1.34 16 36 H 0.03 1.13 8.14 -2.38 -0.02 1.12 16 37 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.03 1.63 7.07 -2.39 -0.02 1.62 16 39 H 0.01 0.27 8.14 -2.38 -0.02 0.26 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -63.00 322.83 1.73 -61.27 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.17 Total: 18.17 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 7.48 Total: 1.77 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -7.80 Total: -125.88 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.87 Total: 44.68 kcal Total: -63.00 1.73 -61.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.691 kcal (2) G-P(sol) polarization free energy of solvation -62.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds