Wall clock time and date at job start Mon Mar 30 2020 01:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.50698 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.38881 * 120.33680 * 269.72846 * 4 3 2 6 6 C 1.38300 * 118.50857 * 179.73123 * 5 4 3 7 7 C 1.39138 * 119.09520 * 0.53534 * 6 5 4 8 8 N 1.38998 * 119.71044 * 179.70293 * 7 6 5 9 9 C 1.46507 * 119.99747 * 0.02562 * 8 7 6 10 10 H 1.09001 * 109.41351 * 324.86027 * 9 8 7 11 11 C 1.52967 * 109.41198 * 84.64679 * 9 8 7 12 12 C 1.53223 * 109.40071 * 183.70562 * 11 9 8 13 13 C 1.51268 * 108.53828 * 305.37205 * 12 11 9 14 14 C 1.37876 * 120.84993 * 231.32475 * 13 12 11 15 15 N 1.31516 * 120.00231 * 180.02562 * 14 13 12 16 16 Si 1.86805 * 119.99990 * 0.02800 * 14 13 12 17 17 H 1.48502 * 109.47143 * 89.99603 * 16 14 13 18 18 H 1.48504 * 109.46961 * 209.99692 * 16 14 13 19 19 H 1.48500 * 109.47022 * 329.99171 * 16 14 13 20 20 C 1.51263 * 118.30032 * 51.35190 * 13 12 11 21 21 C 1.52948 * 109.41444 * 205.00019 * 9 8 7 22 22 N 1.32398 * 120.58729 * 359.72088 * 7 6 5 23 23 C 1.31972 * 121.62354 * 0.02562 * 22 7 6 24 24 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 25 25 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 27 27 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 28 28 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 29 29 H 1.08001 * 120.74518 * 359.96603 * 5 4 3 30 30 H 1.07998 * 120.45308 * 180.23664 * 6 5 4 31 31 H 0.96992 * 120.00514 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47992 * 303.68220 * 11 9 8 33 33 H 1.08999 * 109.48111 * 63.72519 * 11 9 8 34 34 H 1.09002 * 109.62276 * 185.65651 * 12 11 9 35 35 H 1.09001 * 109.78844 * 65.18241 * 12 11 9 36 36 H 0.96997 * 120.00009 * 180.02562 * 15 14 13 37 37 H 1.09002 * 109.62626 * 188.93879 * 20 13 12 38 38 H 1.08998 * 109.62921 * 68.36586 * 20 13 12 39 39 H 1.08995 * 109.48532 * 296.27803 * 21 9 8 40 40 H 1.08999 * 109.48259 * 56.30592 * 21 9 8 41 41 H 1.07998 * 119.57288 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2118 1.1370 1.1996 6 6 5.5893 1.0220 1.1561 7 6 6.2253 0.9715 -0.0804 8 7 7.6097 0.8622 -0.1391 9 6 8.3926 0.8002 1.0977 10 1 7.9253 1.4305 1.8543 11 6 8.4380 -0.6443 1.5988 12 6 9.1776 -0.6949 2.9398 13 6 10.5360 -0.0530 2.7643 14 6 11.6830 -0.7046 3.1654 15 7 12.8555 -0.1308 3.0053 16 14 11.5716 -2.4026 3.9360 17 1 11.6543 -3.4355 2.8722 18 1 12.6925 -2.5865 4.8927 19 1 10.2797 -2.5357 4.6560 20 6 10.6039 1.3223 2.1382 21 6 9.8125 1.2997 0.8262 22 7 5.5235 1.0269 -1.2018 23 6 4.2080 1.1316 -1.1903 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 1.6887 1.8463 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 3.6912 1.1834 2.1447 30 1 6.1639 0.9770 2.0694 31 1 8.0575 0.8270 -0.9987 32 1 7.4217 -1.0156 1.7300 33 1 8.9611 -1.2651 0.8715 34 1 9.3002 -1.7322 3.2513 35 1 8.6103 -0.1506 3.6949 36 1 13.6624 -0.5894 3.2871 37 1 11.6430 1.5810 1.9345 38 1 10.1673 2.0554 2.8164 39 1 10.3031 0.6330 0.1171 40 1 9.7704 2.3061 0.4095 41 1 3.6685 1.1737 -2.1250 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157054773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:33 Heat of formation + Delta-G solvation = -21.670434 kcal Electronic energy + Delta-G solvation = -21012.674273 eV Core-core repulsion = 17891.834892 eV Total energy + Delta-G solvation = -3120.839380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.17168 -38.07579 -37.33887 -34.45806 -32.63835 -31.71779 -30.47981 -29.66113 -27.62412 -26.63712 -24.93482 -23.57735 -22.31285 -21.49284 -21.01732 -19.46252 -17.45118 -16.77303 -16.51733 -16.10235 -15.90997 -15.48758 -14.57358 -14.45014 -14.21879 -14.03590 -13.55416 -13.23171 -12.83695 -12.81718 -12.51127 -12.38507 -12.15125 -11.77659 -11.75950 -11.34942 -11.12342 -10.93459 -10.74133 -10.26250 -10.09970 -9.92121 -9.89454 -9.65162 -9.41846 -9.22859 -9.03039 -8.71535 -8.52165 -7.33928 -6.15744 -4.07230 1.46210 1.56992 3.23911 3.33322 3.34550 3.50453 3.69529 4.25828 4.34154 4.77933 4.85345 4.93157 5.06620 5.11992 5.13284 5.18180 5.24004 5.41094 5.43475 5.57153 5.66693 5.79970 5.94600 6.06600 6.21242 6.38851 6.41304 6.53817 6.63987 6.67798 6.79382 6.88196 6.95828 6.99008 7.03453 7.34049 7.41676 7.59848 7.64952 7.73975 7.96051 8.31328 8.43362 8.90470 9.48955 10.93699 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.031038 B = 0.003591 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.894427 B = 7795.129968 C = 8360.015486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.121 3.879 4 C -0.227 4.227 5 C -0.013 4.013 6 C -0.241 4.241 7 C 0.418 3.582 8 N -0.713 5.713 9 C 0.161 3.839 10 H 0.072 0.928 11 C -0.120 4.120 12 C -0.013 4.013 13 C -0.492 4.492 14 C 0.077 3.923 15 N -0.889 5.889 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.267 1.267 20 C 0.014 3.986 21 C -0.114 4.114 22 N -0.556 5.556 23 C 0.171 3.829 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.400 0.600 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.032 0.968 35 H 0.018 0.982 36 H 0.265 0.735 37 H 0.061 0.939 38 H 0.006 0.994 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.068 2.988 -5.116 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C 0.044 3.956 4 C -0.233 4.233 5 C -0.039 4.039 6 C -0.266 4.266 7 C 0.181 3.819 8 N -0.341 5.341 9 C 0.057 3.943 10 H 0.090 0.910 11 C -0.159 4.159 12 C -0.051 4.051 13 C -0.511 4.511 14 C -0.126 4.126 15 N -0.526 5.526 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.192 1.192 20 C -0.024 4.024 21 C -0.152 4.152 22 N -0.274 5.274 23 C 0.012 3.988 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.235 0.765 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.150 2.764 -5.674 19.216 hybrid contribution -0.459 -0.776 0.821 1.219 sum -18.609 1.988 -4.854 19.334 Atomic orbital electron populations 1.22729 0.81493 1.02639 0.99778 1.88022 1.19151 1.28164 1.95329 1.21069 0.89674 0.84541 1.00315 1.20072 0.94678 1.13916 0.94592 1.21141 0.93281 0.91875 0.97584 1.21524 0.95129 1.11938 0.98058 1.18549 0.85978 0.88305 0.89109 1.45219 1.01605 1.77111 1.10150 1.21129 0.91764 0.97517 0.83856 0.90997 1.22046 0.98397 0.95215 1.00275 1.19720 0.96061 0.97107 0.92235 1.20023 0.89676 1.01768 1.39609 1.24846 0.94934 0.97673 0.95141 1.69828 0.97788 1.38251 1.46733 0.86661 0.77499 0.84617 0.79600 1.20392 1.21603 1.19159 1.19342 0.97295 0.95511 0.90286 1.21920 0.93444 0.98014 1.01847 1.67249 1.08447 1.22075 1.29611 1.22162 0.88595 0.91052 0.96964 0.94216 0.89793 0.94189 0.92784 0.92889 0.85420 0.84530 0.76532 0.94531 0.92627 0.94984 0.96368 0.92509 0.92001 0.97561 0.92559 0.94432 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.50 10.69 -35.23 -0.38 -4.88 16 3 C 0.12 1.23 6.08 36.00 0.22 1.45 16 4 C -0.23 -2.92 5.53 -104.46 -0.58 -3.50 16 5 C -0.01 -0.18 9.85 -39.32 -0.39 -0.56 16 6 C -0.24 -3.73 8.79 -39.22 -0.34 -4.08 16 7 C 0.42 6.97 7.63 -155.02 -1.18 5.79 16 8 N -0.71 -12.01 5.24 -53.97 -0.28 -12.30 16 9 C 0.16 2.97 2.04 -67.97 -0.14 2.83 16 10 H 0.07 1.33 6.45 -51.93 -0.34 0.99 16 11 C -0.12 -2.39 5.40 -26.63 -0.14 -2.53 16 12 C -0.01 -0.29 5.59 -27.49 -0.15 -0.45 16 13 C -0.49 -12.50 5.51 -98.93 -0.55 -13.04 16 14 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 15 N -0.89 -25.02 12.73 55.43 0.71 -24.32 16 16 Si 0.89 20.79 27.27 -169.99 -4.64 16.16 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.05 6.46 56.52 0.37 -5.69 16 20 C 0.01 0.32 5.97 -27.49 -0.16 0.16 16 21 C -0.11 -2.28 5.40 -26.64 -0.14 -2.42 16 22 N -0.56 -9.03 10.39 -12.44 -0.13 -9.16 16 23 C 0.17 2.35 10.85 -17.57 -0.19 2.16 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.14 2.11 6.10 -52.49 -0.32 1.79 16 31 H 0.40 6.43 8.72 -40.82 -0.36 6.08 16 32 H 0.04 0.68 7.66 -51.93 -0.40 0.28 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.03 0.72 4.78 -51.93 -0.25 0.47 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 38 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 328.65 15.07 4.95 4.95 Total: -1.00 -28.73 328.65 -8.77 -37.50 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.26 Total: 2.94 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.74 Total: -10.90 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.29 Total: -45.77 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.38 Total: -4.88 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.64 Total: 16.16 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.73 -8.77 -37.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157054773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.827 kcal (2) G-P(sol) polarization free energy of solvation -28.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds