Wall clock time and date at job start Mon Mar 30 2020 01:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.50698 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.38881 * 120.33680 * 269.72846 * 4 3 2 6 6 C 1.38300 * 118.50857 * 179.73123 * 5 4 3 7 7 C 1.39138 * 119.09520 * 0.53534 * 6 5 4 8 8 N 1.38998 * 119.71044 * 179.70293 * 7 6 5 9 9 C 1.46507 * 119.99747 * 0.02562 * 8 7 6 10 10 H 1.09001 * 109.41351 * 324.86027 * 9 8 7 11 11 C 1.52967 * 109.41198 * 84.64679 * 9 8 7 12 12 C 1.53223 * 109.40071 * 183.70562 * 11 9 8 13 13 C 1.51268 * 108.53828 * 305.37205 * 12 11 9 14 14 C 1.37876 * 120.84993 * 231.32475 * 13 12 11 15 15 N 1.31516 * 120.00231 * 180.02562 * 14 13 12 16 16 Si 1.86805 * 119.99990 * 0.02800 * 14 13 12 17 17 H 1.48502 * 109.47143 * 89.99603 * 16 14 13 18 18 H 1.48504 * 109.46961 * 209.99692 * 16 14 13 19 19 H 1.48500 * 109.47022 * 329.99171 * 16 14 13 20 20 C 1.51263 * 118.30032 * 51.35190 * 13 12 11 21 21 C 1.52948 * 109.41444 * 205.00019 * 9 8 7 22 22 N 1.32398 * 120.58729 * 359.72088 * 7 6 5 23 23 C 1.31972 * 121.62354 * 0.02562 * 22 7 6 24 24 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 25 25 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 27 27 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 28 28 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 29 29 H 1.08001 * 120.74518 * 359.96603 * 5 4 3 30 30 H 1.07998 * 120.45308 * 180.23664 * 6 5 4 31 31 H 0.96992 * 120.00514 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47992 * 303.68220 * 11 9 8 33 33 H 1.08999 * 109.48111 * 63.72519 * 11 9 8 34 34 H 1.09002 * 109.62276 * 185.65651 * 12 11 9 35 35 H 1.09001 * 109.78844 * 65.18241 * 12 11 9 36 36 H 0.96997 * 120.00009 * 180.02562 * 15 14 13 37 37 H 1.09002 * 109.62626 * 188.93879 * 20 13 12 38 38 H 1.08998 * 109.62921 * 68.36586 * 20 13 12 39 39 H 1.08995 * 109.48532 * 296.27803 * 21 9 8 40 40 H 1.08999 * 109.48259 * 56.30592 * 21 9 8 41 41 H 1.07998 * 119.57288 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2118 1.1370 1.1996 6 6 5.5893 1.0220 1.1561 7 6 6.2253 0.9715 -0.0804 8 7 7.6097 0.8622 -0.1391 9 6 8.3926 0.8002 1.0977 10 1 7.9253 1.4305 1.8543 11 6 8.4380 -0.6443 1.5988 12 6 9.1776 -0.6949 2.9398 13 6 10.5360 -0.0530 2.7643 14 6 11.6830 -0.7046 3.1654 15 7 12.8555 -0.1308 3.0053 16 14 11.5716 -2.4026 3.9360 17 1 11.6543 -3.4355 2.8722 18 1 12.6925 -2.5865 4.8927 19 1 10.2797 -2.5357 4.6560 20 6 10.6039 1.3223 2.1382 21 6 9.8125 1.2997 0.8262 22 7 5.5235 1.0269 -1.2018 23 6 4.2080 1.1316 -1.1903 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 1.6887 1.8463 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 3.6912 1.1834 2.1447 30 1 6.1639 0.9770 2.0694 31 1 8.0575 0.8270 -0.9987 32 1 7.4217 -1.0156 1.7300 33 1 8.9611 -1.2651 0.8715 34 1 9.3002 -1.7322 3.2513 35 1 8.6103 -0.1506 3.6949 36 1 13.6624 -0.5894 3.2871 37 1 11.6430 1.5810 1.9345 38 1 10.1673 2.0554 2.8164 39 1 10.3031 0.6330 0.1171 40 1 9.7704 2.3061 0.4095 41 1 3.6685 1.1737 -2.1250 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157054773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:33 Heat of formation + Delta-G solvation = -38.715429 kcal Electronic energy + Delta-G solvation = -21013.413399 eV Core-core repulsion = 17891.834892 eV Total energy + Delta-G solvation = -3121.578507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29976 -39.26244 -38.47449 -35.96007 -33.99987 -33.21289 -31.81977 -31.24074 -29.06483 -27.56203 -25.89831 -24.71580 -23.89630 -23.18967 -22.29197 -21.08723 -18.74171 -17.98360 -17.74395 -17.24661 -16.80133 -16.41190 -16.38084 -15.75770 -15.45535 -15.33308 -14.87373 -14.48549 -14.43827 -14.12659 -13.97415 -13.82459 -13.46241 -13.12058 -12.82990 -12.75028 -12.56418 -12.48947 -12.22528 -11.88462 -11.83942 -11.52183 -11.11120 -10.87993 -10.65790 -10.60917 -10.55119 -10.46488 -10.31222 -8.56399 -8.17576 -6.11525 0.37237 0.49027 1.38028 1.41895 1.49742 2.22988 2.40539 2.79108 3.11707 3.32919 3.72725 3.97797 4.00666 4.09442 4.16800 4.17946 4.25620 4.44051 4.52612 4.60990 4.64665 4.69421 4.72820 4.88827 4.93160 4.94618 4.96158 5.05884 5.09366 5.16984 5.23355 5.24619 5.44485 5.57413 5.62268 5.71963 5.76835 5.82485 6.14387 6.31953 6.33600 6.70594 6.95220 7.26216 7.46753 8.93206 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.031038 B = 0.003591 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.894427 B = 7795.129968 C = 8360.015486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.120 3.880 4 C -0.220 4.220 5 C -0.014 4.014 6 C -0.255 4.255 7 C 0.397 3.603 8 N -0.716 5.716 9 C 0.178 3.822 10 H 0.075 0.925 11 C -0.112 4.112 12 C -0.015 4.015 13 C -0.499 4.499 14 C 0.023 3.977 15 N -0.931 5.931 16 Si 0.938 3.062 17 H -0.277 1.277 18 H -0.293 1.293 19 H -0.252 1.252 20 C 0.010 3.990 21 C -0.102 4.102 22 N -0.574 5.574 23 C 0.160 3.840 24 H 0.051 0.949 25 H 0.089 0.911 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.153 0.847 30 H 0.134 0.866 31 H 0.401 0.599 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.030 0.970 35 H 0.027 0.973 36 H 0.263 0.737 37 H 0.029 0.971 38 H 0.006 0.994 39 H 0.046 0.954 40 H 0.054 0.946 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.372 2.863 -5.319 23.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C 0.044 3.956 4 C -0.225 4.225 5 C -0.039 4.039 6 C -0.280 4.280 7 C 0.162 3.838 8 N -0.346 5.346 9 C 0.073 3.927 10 H 0.093 0.907 11 C -0.151 4.151 12 C -0.053 4.053 13 C -0.518 4.518 14 C -0.176 4.176 15 N -0.570 5.570 16 Si 0.765 3.235 17 H -0.203 1.203 18 H -0.219 1.219 19 H -0.177 1.177 20 C -0.028 4.028 21 C -0.141 4.141 22 N -0.292 5.292 23 C 0.002 3.998 24 H 0.070 0.930 25 H 0.108 0.892 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.170 0.830 30 H 0.152 0.848 31 H 0.236 0.764 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.025 0.975 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -21.511 2.641 -5.887 22.458 hybrid contribution 0.396 -0.665 0.847 1.147 sum -21.115 1.976 -5.041 21.798 Atomic orbital electron populations 1.22912 0.79551 1.03540 1.01088 1.87959 1.21319 1.28839 1.95627 1.21151 0.87668 0.84549 1.02220 1.20441 0.96463 1.11625 0.93991 1.21487 0.92639 0.90755 0.99059 1.21609 0.96153 1.12791 0.97466 1.18676 0.85719 0.89591 0.89851 1.44909 1.01920 1.78376 1.09345 1.20745 0.90826 0.96427 0.84709 0.90680 1.21913 0.98574 0.96169 0.98441 1.19734 0.94831 0.96765 0.93946 1.20641 0.90933 1.02222 1.38051 1.25585 0.94872 1.00903 0.96195 1.69962 0.98405 1.39767 1.48912 0.85843 0.77828 0.80975 0.78873 1.20278 1.21949 1.17652 1.19295 0.96139 0.95106 0.92250 1.21697 0.94023 0.98979 0.99401 1.67228 1.09712 1.22555 1.29740 1.22678 0.87958 0.90571 0.98613 0.92991 0.89224 0.92756 0.90734 0.91187 0.82973 0.84841 0.76353 0.93019 0.93773 0.95127 0.95461 0.92826 0.95182 0.97519 0.93567 0.92729 0.80903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -8.40 10.69 -148.98 -1.59 -9.99 16 3 C 0.12 2.02 6.08 71.24 0.43 2.45 16 4 C -0.22 -5.01 5.53 -19.76 -0.11 -5.12 16 5 C -0.01 -0.33 9.85 22.44 0.22 -0.11 16 6 C -0.26 -7.43 8.79 22.50 0.20 -7.23 16 7 C 0.40 12.73 7.63 133.07 1.01 13.74 16 8 N -0.72 -23.45 5.24 -324.66 -1.70 -25.15 16 9 C 0.18 6.37 2.04 44.96 0.09 6.47 16 10 H 0.08 2.68 6.45 -2.39 -0.02 2.66 16 11 C -0.11 -4.31 5.40 30.66 0.17 -4.15 16 12 C -0.01 -0.64 5.59 30.10 0.17 -0.47 16 13 C -0.50 -25.52 5.51 -16.17 -0.09 -25.61 16 14 C 0.02 1.23 5.46 84.65 0.46 1.69 16 15 N -0.93 -54.06 12.73 21.45 0.27 -53.79 16 16 Si 0.94 42.86 27.27 68.60 1.87 44.74 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 19 H -0.25 -10.82 6.46 99.48 0.64 -10.18 16 20 C 0.01 0.49 5.97 30.10 0.18 0.67 16 21 C -0.10 -4.10 5.40 30.66 0.17 -3.93 16 22 N -0.57 -17.75 10.39 -193.26 -2.01 -19.76 16 23 C 0.16 4.00 10.85 84.62 0.92 4.92 16 24 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 28 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 29 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 30 H 0.13 3.90 6.10 -2.91 -0.02 3.88 16 31 H 0.40 12.67 8.72 -92.71 -0.81 11.87 16 32 H 0.05 1.84 7.66 -2.39 -0.02 1.82 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.03 1.33 4.78 -2.39 -0.01 1.32 16 35 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 37 H 0.03 1.62 7.07 -2.39 -0.02 1.61 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -62.04 328.65 2.07 -59.97 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.16 Total: 19.13 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 5.07 Total: -15.14 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -3.44 Total: -98.70 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -1.59 Total: -9.99 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.87 Total: 44.74 kcal Total: -62.04 2.07 -59.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157054773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.256 kcal (2) G-P(sol) polarization free energy of solvation -62.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds