Wall clock time and date at job start Mon Mar 30 2020 01:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 119.99573 * 2 1 4 4 H 1.48508 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47262 * 300.00144 * 3 2 1 6 6 H 1.48503 * 109.47184 * 60.00240 * 3 2 1 7 7 C 1.37874 * 120.00698 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00472 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99434 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46703 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46954 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47353 * 179.97438 * 11 10 9 13 13 C 1.38991 * 120.00563 * 179.97438 * 12 11 10 14 14 C 1.39187 * 120.03583 * 359.72846 * 13 12 11 15 15 N 1.32036 * 120.07264 * 179.68626 * 14 13 12 16 16 C 1.32068 * 120.17224 * 0.60559 * 15 14 13 17 17 C 1.39125 * 120.08297 * 359.67229 * 16 15 14 18 18 N 1.39002 * 120.03828 * 179.97438 * 17 16 15 19 19 C 1.48535 * 110.99794 * 176.52795 * 18 17 16 20 20 C 1.54935 * 103.22460 * 159.71992 * 19 18 17 21 21 C 1.54591 * 102.92472 * 322.58772 * 20 19 18 22 22 C 1.47892 * 111.00008 * 293.92345 * 18 17 16 23 23 N 1.32727 * 120.04921 * 179.97438 * 13 12 11 24 24 H 0.96995 * 120.00551 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47310 * 60.00422 * 9 7 2 26 26 H 1.08999 * 109.46862 * 299.99628 * 9 7 2 27 27 H 1.08991 * 109.47287 * 59.99610 * 10 9 7 28 28 H 1.08999 * 109.47031 * 299.99369 * 10 9 7 29 29 H 1.09005 * 109.47070 * 300.00154 * 11 10 9 30 30 H 1.09001 * 109.47459 * 59.99701 * 11 10 9 31 31 H 0.97008 * 119.99774 * 0.02562 * 12 11 10 32 32 H 1.07988 * 119.96139 * 359.97438 * 14 13 12 33 33 H 1.07999 * 119.95667 * 179.68763 * 16 15 14 34 34 H 1.08997 * 110.66775 * 278.15453 * 19 18 17 35 35 H 1.09000 * 110.66670 * 41.28704 * 19 18 17 36 36 H 1.09004 * 110.72500 * 204.22608 * 20 19 18 37 37 H 1.09004 * 110.72503 * 80.94975 * 20 19 18 38 38 H 1.09005 * 110.31075 * 263.04290 * 21 20 19 39 39 H 1.08996 * 110.31168 * 140.87595 * 21 20 19 40 40 H 1.09008 * 109.92242 * 333.51051 * 22 18 17 41 41 H 1.09003 * 109.92141 * 94.80672 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8901 2.3965 -1.2125 6 1 1.8902 2.3964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 6 1.4806 -4.9870 -0.0033 12 7 2.4326 -6.1005 -0.0037 13 6 1.9694 -7.4109 -0.0047 14 6 0.6012 -7.6663 0.0003 15 7 0.1604 -8.9109 -0.0070 16 6 1.0150 -9.9178 -0.0069 17 6 2.3841 -9.6704 -0.0061 18 7 3.2828 -10.7308 -0.0055 19 6 4.6829 -10.2420 -0.0887 20 6 5.5088 -11.4397 0.4443 21 6 4.6184 -11.9959 1.5790 22 6 3.1976 -11.4971 1.2565 23 7 2.8312 -8.4204 -0.0056 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5563 -0.8920 26 1 0.6242 -2.5575 0.8880 27 1 2.8715 -3.6046 0.8889 28 1 2.8727 -3.6038 -0.8910 29 1 0.8529 -5.0454 0.8860 30 1 0.8548 -5.0442 -0.8940 31 1 3.3863 -5.9231 -0.0024 32 1 -0.1006 -6.8456 0.0054 33 1 0.6507 -10.9344 -0.0078 34 1 4.9517 -10.0185 -1.1211 35 1 4.8228 -9.3660 0.5447 36 1 6.4681 -11.1025 0.8369 37 1 5.6515 -12.1874 -0.3358 38 1 4.9463 -11.6064 2.5428 39 1 4.6454 -13.0856 1.5815 40 1 2.8393 -10.8523 2.0591 41 1 2.5257 -12.3462 1.1308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:58 Heat of formation + Delta-G solvation = 49.403630 kcal Electronic energy + Delta-G solvation = -20420.918716 eV Core-core repulsion = 17335.454090 eV Total energy + Delta-G solvation = -3085.464626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24594 -38.99431 -36.63082 -34.26953 -33.74354 -32.32154 -30.84326 -29.34740 -28.61721 -26.61482 -24.53881 -23.69915 -22.63806 -21.31062 -20.98869 -20.43330 -17.72914 -17.66300 -16.58280 -16.42852 -16.33800 -15.75843 -15.26782 -14.63564 -14.47102 -14.38676 -14.11814 -13.49016 -12.99940 -12.82334 -12.64193 -12.29676 -12.23001 -11.89677 -11.76456 -11.66518 -11.31134 -11.25288 -10.96104 -10.86969 -10.82007 -10.60726 -10.35588 -9.88212 -9.58114 -9.20108 -9.11675 -8.86764 -8.43332 -7.65519 -6.07930 -4.10967 1.00524 1.39495 3.00185 3.26586 3.34475 3.37980 3.46001 3.85221 4.21219 4.33945 4.39881 4.53993 4.56230 4.68846 4.78565 4.99805 5.13506 5.24389 5.28400 5.35201 5.43288 5.45052 5.48953 5.54344 5.56836 5.64903 5.73258 5.82714 5.94780 6.11496 6.23393 6.45600 6.47874 6.79846 6.86091 6.97421 7.51760 7.55267 7.65897 7.66564 7.90211 8.06291 8.31444 8.95605 9.53861 11.03388 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.033622 B = 0.002750 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.585412 B =10178.270002 C =10837.412132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.119 3.881 12 N -0.707 5.707 13 C 0.386 3.614 14 C -0.037 4.037 15 N -0.387 5.387 16 C -0.033 4.033 17 C 0.303 3.697 18 N -0.458 5.458 19 C 0.044 3.956 20 C -0.127 4.127 21 C -0.130 4.130 22 C 0.045 3.955 23 N -0.545 5.545 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.405 0.595 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.455 -23.460 2.173 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.004 4.004 12 N -0.337 5.337 13 C 0.144 3.856 14 C -0.206 4.206 15 N -0.099 5.099 16 C -0.197 4.197 17 C 0.067 3.933 18 N -0.178 5.178 19 C -0.083 4.083 20 C -0.165 4.165 21 C -0.169 4.169 22 C -0.081 4.081 23 N -0.274 5.274 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.240 0.760 32 H 0.183 0.817 33 H 0.178 0.822 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.016 -23.532 1.734 24.617 hybrid contribution 0.978 1.568 0.477 1.908 sum 7.994 -21.964 2.211 23.478 Atomic orbital electron populations 1.69958 1.06055 1.26683 1.50576 1.25019 0.94868 0.99349 0.95187 0.86525 0.80073 0.83689 0.77649 1.19747 1.20952 1.20956 1.21223 0.93067 0.90877 1.50951 0.92580 1.19040 0.93784 0.90828 0.97674 1.21872 0.99870 0.92788 1.01251 1.21842 0.91946 0.85165 1.01491 1.44958 1.10272 1.00975 1.77463 1.19288 0.90193 0.86294 0.89791 1.23010 0.93018 0.95301 1.09257 1.68135 1.37682 0.99141 1.04952 1.22739 0.88408 0.99267 1.09279 1.20630 0.92266 0.87835 0.92587 1.62115 1.05219 1.17429 1.33020 1.23170 0.85206 0.97166 1.02787 1.22556 0.98251 0.97707 0.98025 1.22423 0.93802 1.01498 0.99128 1.22929 0.98622 0.97900 0.88667 1.67763 1.38120 0.98739 1.22802 0.92920 0.96183 0.96202 0.92527 0.92505 0.91660 0.91627 0.75979 0.81670 0.82171 0.89668 0.90890 0.90558 0.90589 0.91054 0.90454 0.92803 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.22 5.27 -26.73 -0.14 -2.37 16 11 C 0.12 1.83 4.90 -4.05 -0.02 1.81 16 12 N -0.71 -10.11 5.73 -60.33 -0.35 -10.46 16 13 C 0.39 5.74 7.66 -154.73 -1.19 4.56 16 14 C -0.04 -0.55 10.48 -17.11 -0.18 -0.73 16 15 N -0.39 -5.71 10.48 -12.70 -0.13 -5.85 16 16 C -0.03 -0.43 10.70 -17.12 -0.18 -0.61 16 17 C 0.30 4.00 6.00 -154.72 -0.93 3.07 16 18 N -0.46 -4.97 5.29 -169.14 -0.90 -5.86 16 19 C 0.04 0.43 6.02 -1.90 -0.01 0.42 16 20 C -0.13 -0.90 7.06 -24.87 -0.18 -1.08 16 21 C -0.13 -0.85 6.93 -25.38 -0.18 -1.03 16 22 C 0.04 0.37 6.29 -2.76 -0.02 0.35 16 23 N -0.55 -7.91 8.62 -11.43 -0.10 -8.01 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 30 H 0.07 1.00 7.95 -51.93 -0.41 0.59 16 31 H 0.40 5.49 8.60 -40.82 -0.35 5.14 16 32 H 0.17 2.25 6.71 -52.49 -0.35 1.90 16 33 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.83 7.15 -51.93 -0.37 0.46 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.50 7.76 -51.92 -0.40 0.09 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -30.21 336.72 -10.74 -40.95 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.49 Total: 1.68 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -3.57 Total: -8.23 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.74 Total: -55.67 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.21 -10.74 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.354 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds