Wall clock time and date at job start Mon Mar 30 2020 01:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 119.99573 * 2 1 4 4 H 1.48508 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47262 * 300.00144 * 3 2 1 6 6 H 1.48503 * 109.47184 * 60.00240 * 3 2 1 7 7 C 1.37874 * 120.00698 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00472 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99434 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46703 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46954 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47353 * 179.97438 * 11 10 9 13 13 C 1.38991 * 120.00563 * 179.97438 * 12 11 10 14 14 C 1.39187 * 120.03583 * 359.72846 * 13 12 11 15 15 N 1.32036 * 120.07264 * 179.68626 * 14 13 12 16 16 C 1.32068 * 120.17224 * 0.60559 * 15 14 13 17 17 C 1.39125 * 120.08297 * 359.67229 * 16 15 14 18 18 N 1.39002 * 120.03828 * 179.97438 * 17 16 15 19 19 C 1.48535 * 110.99794 * 176.52795 * 18 17 16 20 20 C 1.54935 * 103.22460 * 159.71992 * 19 18 17 21 21 C 1.54591 * 102.92472 * 322.58772 * 20 19 18 22 22 C 1.47892 * 111.00008 * 293.92345 * 18 17 16 23 23 N 1.32727 * 120.04921 * 179.97438 * 13 12 11 24 24 H 0.96995 * 120.00551 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47310 * 60.00422 * 9 7 2 26 26 H 1.08999 * 109.46862 * 299.99628 * 9 7 2 27 27 H 1.08991 * 109.47287 * 59.99610 * 10 9 7 28 28 H 1.08999 * 109.47031 * 299.99369 * 10 9 7 29 29 H 1.09005 * 109.47070 * 300.00154 * 11 10 9 30 30 H 1.09001 * 109.47459 * 59.99701 * 11 10 9 31 31 H 0.97008 * 119.99774 * 0.02562 * 12 11 10 32 32 H 1.07988 * 119.96139 * 359.97438 * 14 13 12 33 33 H 1.07999 * 119.95667 * 179.68763 * 16 15 14 34 34 H 1.08997 * 110.66775 * 278.15453 * 19 18 17 35 35 H 1.09000 * 110.66670 * 41.28704 * 19 18 17 36 36 H 1.09004 * 110.72500 * 204.22608 * 20 19 18 37 37 H 1.09004 * 110.72503 * 80.94975 * 20 19 18 38 38 H 1.09005 * 110.31075 * 263.04290 * 21 20 19 39 39 H 1.08996 * 110.31168 * 140.87595 * 21 20 19 40 40 H 1.09008 * 109.92242 * 333.51051 * 22 18 17 41 41 H 1.09003 * 109.92141 * 94.80672 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8901 2.3965 -1.2125 6 1 1.8902 2.3964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 6 1.4806 -4.9870 -0.0033 12 7 2.4326 -6.1005 -0.0037 13 6 1.9694 -7.4109 -0.0047 14 6 0.6012 -7.6663 0.0003 15 7 0.1604 -8.9109 -0.0070 16 6 1.0150 -9.9178 -0.0069 17 6 2.3841 -9.6704 -0.0061 18 7 3.2828 -10.7308 -0.0055 19 6 4.6829 -10.2420 -0.0887 20 6 5.5088 -11.4397 0.4443 21 6 4.6184 -11.9959 1.5790 22 6 3.1976 -11.4971 1.2565 23 7 2.8312 -8.4204 -0.0056 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5563 -0.8920 26 1 0.6242 -2.5575 0.8880 27 1 2.8715 -3.6046 0.8889 28 1 2.8727 -3.6038 -0.8910 29 1 0.8529 -5.0454 0.8860 30 1 0.8548 -5.0442 -0.8940 31 1 3.3863 -5.9231 -0.0024 32 1 -0.1006 -6.8456 0.0054 33 1 0.6507 -10.9344 -0.0078 34 1 4.9517 -10.0185 -1.1211 35 1 4.8228 -9.3660 0.5447 36 1 6.4681 -11.1025 0.8369 37 1 5.6515 -12.1874 -0.3358 38 1 4.9463 -11.6064 2.5428 39 1 4.6454 -13.0856 1.5815 40 1 2.8393 -10.8523 2.0591 41 1 2.5257 -12.3462 1.1308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157641248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:57 Heat of formation + Delta-G solvation = 30.738482 kcal Electronic energy + Delta-G solvation = -20421.728098 eV Core-core repulsion = 17335.454090 eV Total energy + Delta-G solvation = -3086.274008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.26845 -39.83031 -37.88032 -35.73801 -35.05215 -33.75402 -32.19763 -30.06441 -29.67912 -28.27170 -25.61716 -25.18960 -23.78255 -22.42009 -21.87143 -21.66933 -18.87263 -18.71015 -18.34321 -17.55826 -17.18627 -16.83294 -16.49954 -16.45338 -15.74453 -15.61307 -14.93066 -14.41510 -14.22227 -13.96478 -13.73858 -13.71349 -13.47972 -13.38130 -12.86607 -12.60169 -12.53871 -12.43099 -12.36085 -12.29035 -12.07738 -11.73543 -11.50579 -11.45486 -11.21763 -11.19264 -10.56147 -10.19608 -9.83582 -8.74596 -8.20976 -6.31281 -0.05222 0.29626 1.40038 1.41012 1.53300 1.88030 2.40862 2.53401 2.80320 3.13285 3.41054 3.52002 3.57727 3.74010 3.87848 4.05472 4.09706 4.19542 4.22691 4.32022 4.42179 4.54679 4.55837 4.70502 4.86255 4.90587 4.92871 4.94002 4.99632 5.11420 5.14361 5.16887 5.24161 5.46638 5.50805 5.71498 5.74242 5.84063 5.93359 6.22888 6.40552 6.56922 6.85897 6.97204 7.38127 8.90943 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.033622 B = 0.002750 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.585412 B =10178.270002 C =10837.412132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.103 4.103 11 C 0.134 3.866 12 N -0.704 5.704 13 C 0.377 3.623 14 C -0.054 4.054 15 N -0.401 5.401 16 C -0.031 4.031 17 C 0.300 3.700 18 N -0.460 5.460 19 C 0.040 3.960 20 C -0.120 4.120 21 C -0.125 4.125 22 C 0.041 3.959 23 N -0.555 5.555 24 H 0.264 0.736 25 H -0.001 1.001 26 H -0.001 1.001 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.408 0.592 32 H 0.170 0.830 33 H 0.186 0.814 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.042 0.958 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.946 -24.937 2.460 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.141 4.141 11 C 0.011 3.989 12 N -0.335 5.335 13 C 0.136 3.864 14 C -0.221 4.221 15 N -0.114 5.114 16 C -0.196 4.196 17 C 0.064 3.936 18 N -0.180 5.180 19 C -0.087 4.087 20 C -0.158 4.158 21 C -0.163 4.163 22 C -0.084 4.084 23 N -0.284 5.284 24 H 0.072 0.928 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.245 0.755 32 H 0.187 0.813 33 H 0.203 0.797 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.061 0.939 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.525 -25.022 2.026 26.512 hybrid contribution 0.526 1.894 0.377 2.001 sum 9.050 -23.129 2.403 24.952 Atomic orbital electron populations 1.70080 1.07688 1.27726 1.51693 1.25933 0.95744 1.03256 0.94851 0.85441 0.79112 0.79039 0.77708 1.18636 1.20524 1.20485 1.21700 0.93583 0.92316 1.50404 0.92139 1.18929 0.94300 0.92346 0.95605 1.21569 0.98633 0.92295 1.01635 1.21512 0.91557 0.84110 1.01768 1.44696 1.10119 1.00626 1.78014 1.19319 0.90376 0.86379 0.90360 1.23093 0.93157 0.95661 1.10209 1.68141 1.38356 0.99447 1.05463 1.23168 0.88357 0.99985 1.08094 1.20958 0.92990 0.87960 0.91695 1.62179 1.05218 1.16418 1.34138 1.23191 0.85390 0.97986 1.02122 1.22549 0.98343 0.96512 0.98393 1.22445 0.92183 1.02718 0.98984 1.23087 1.00416 0.97825 0.87082 1.67795 1.38296 0.99243 1.23084 0.92760 0.98281 0.98236 0.92055 0.92122 0.91409 0.91513 0.75546 0.81296 0.79718 0.90539 0.92547 0.89371 0.89754 0.90599 0.88389 0.93929 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 2 C 0.00 0.00 5.46 84.65 0.46 0.47 16 3 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.03 1.28 4.97 29.85 0.15 1.43 16 10 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 11 C 0.13 4.13 4.90 86.38 0.42 4.56 16 12 N -0.70 -19.92 5.73 -344.80 -1.97 -21.90 16 13 C 0.38 11.12 7.66 132.98 1.02 12.14 16 14 C -0.05 -1.58 10.48 84.89 0.89 -0.69 16 15 N -0.40 -11.64 10.48 -194.10 -2.03 -13.68 16 16 C -0.03 -0.78 10.70 84.87 0.91 0.13 16 17 C 0.30 7.65 6.00 132.96 0.80 8.45 16 18 N -0.46 -9.26 5.29 -689.05 -3.65 -12.91 16 19 C 0.04 0.75 6.02 86.65 0.52 1.27 16 20 C -0.12 -1.41 7.06 31.80 0.22 -1.19 16 21 C -0.13 -1.28 6.93 31.47 0.22 -1.06 16 22 C 0.04 0.59 6.29 86.45 0.54 1.14 16 23 N -0.55 -15.88 8.62 -190.07 -1.64 -17.52 16 24 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 25 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 26 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.07 2.07 7.93 -2.38 -0.02 2.05 16 30 H 0.07 2.05 7.95 -2.39 -0.02 2.03 16 31 H 0.41 10.88 8.60 -92.70 -0.80 10.08 16 32 H 0.17 4.65 6.71 -2.92 -0.02 4.64 16 33 H 0.19 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.25 7.15 -2.39 -0.02 1.24 16 36 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.04 0.72 7.76 -2.38 -0.02 0.70 16 41 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -64.69 336.72 -0.21 -64.91 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.22 Total: 17.44 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 6.55 Total: -6.58 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -9.01 Total: -121.27 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -64.69 -0.21 -64.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.645 kcal (2) G-P(sol) polarization free energy of solvation -64.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds