Wall clock time and date at job start Mon Mar 30 2020 02:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 N 1.46506 * 109.47042 * 240.00395 * 2 1 3 5 5 C 1.38817 * 119.99637 * 245.52994 * 4 2 1 6 6 C 1.39971 * 119.97536 * 12.68370 * 5 4 2 7 7 N 1.32120 * 120.32255 * 179.97438 * 6 5 4 8 8 C 1.31927 * 120.27201 * 0.02803 * 7 6 5 9 9 C 1.40681 * 119.93703 * 359.97438 * 8 7 6 10 10 C 1.41264 * 120.16150 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99979 * 154.01274 * 10 9 8 12 12 C 1.40051 * 120.00138 * 334.01371 * 10 9 8 13 13 N 1.30735 * 120.00530 * 161.25175 * 12 10 9 14 14 Si 1.86808 * 119.99936 * 341.25446 * 12 10 9 15 15 H 1.48492 * 109.47178 * 95.07255 * 14 12 10 16 16 H 1.48501 * 109.46897 * 215.07588 * 14 12 10 17 17 H 1.48501 * 109.46628 * 335.07191 * 14 12 10 18 18 N 1.32240 * 119.97194 * 192.41264 * 5 4 2 19 19 C 1.46497 * 119.99984 * 65.52531 * 4 2 1 20 20 H 1.08999 * 110.27748 * 359.36754 * 19 4 2 21 21 C 1.54599 * 110.30911 * 237.16784 * 19 4 2 22 22 C 1.54938 * 102.92072 * 219.12971 * 21 19 4 23 23 N 1.48529 * 103.22454 * 37.41842 * 22 21 19 24 24 C 1.47902 * 105.82342 * 320.78717 * 23 22 21 25 25 H 1.09005 * 109.46602 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47118 * 60.00106 * 1 2 3 27 27 H 1.09001 * 109.46943 * 299.99847 * 1 2 3 28 28 H 1.08997 * 109.47118 * 119.99894 * 2 1 3 29 29 H 1.08996 * 109.47270 * 59.99836 * 3 2 1 30 30 H 1.09001 * 109.47278 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47041 * 300.00404 * 3 2 1 32 32 H 1.08001 * 119.83334 * 359.97438 * 6 5 4 33 33 H 1.08009 * 120.03357 * 180.02562 * 8 7 6 34 34 H 0.97003 * 120.00036 * 180.02562 * 13 12 10 35 35 H 1.08998 * 110.72624 * 337.49395 * 21 19 4 36 36 H 1.08996 * 110.71940 * 100.77112 * 21 19 4 37 37 H 1.08999 * 110.66691 * 278.97853 * 22 21 19 38 38 H 1.09000 * 110.66275 * 155.85116 * 22 21 19 39 39 H 1.00907 * 110.99606 * 200.27296 * 23 22 21 40 40 H 1.08995 * 109.91876 * 265.98411 * 24 23 22 41 41 H 1.09003 * 109.91442 * 144.68366 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1963 5 6 2.7192 -1.8824 -1.0721 6 6 2.7333 -2.5611 0.1519 7 7 3.3977 -3.6962 0.2776 8 6 4.0544 -4.1997 -0.7499 9 6 4.0478 -3.5268 -1.9853 10 6 4.7497 -4.0614 -3.0885 11 1 4.4361 -3.8243 -4.0945 12 6 5.8523 -4.8989 -2.8778 13 7 6.2747 -5.6779 -3.8390 14 14 6.7195 -4.9029 -1.2232 15 1 6.1763 -5.9996 -0.3823 16 1 8.1755 -5.1107 -1.4280 17 1 6.4959 -3.6012 -0.5442 18 7 3.3686 -2.3783 -2.1119 19 6 1.7670 -0.1234 -2.5234 20 1 1.1977 0.8021 -2.4370 21 6 1.0099 -1.1411 -3.4073 22 6 1.6692 -0.9512 -4.7965 23 7 3.0980 -0.7167 -4.4654 24 6 3.0972 0.1338 -3.2553 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 2.1985 -2.1550 0.9977 33 1 4.5959 -5.1281 -0.6430 34 1 7.0382 -6.2582 -3.6928 35 1 1.1629 -2.1570 -3.0432 36 1 -0.0524 -0.9009 -3.4483 37 1 1.2459 -0.0869 -5.3082 38 1 1.5571 -1.8508 -5.4016 39 1 3.5756 -0.2602 -5.2280 40 1 3.1678 1.1837 -3.5394 41 1 3.9339 -0.1365 -2.6110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158032527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:33 Heat of formation + Delta-G solvation = 64.680124 kcal Electronic energy + Delta-G solvation = -22716.196725 eV Core-core repulsion = 19631.394537 eV Total energy + Delta-G solvation = -3084.802188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.75745 -38.06360 -36.15612 -33.85460 -32.76578 -31.44684 -29.91405 -28.76759 -27.56412 -27.01574 -25.56619 -22.56024 -22.10053 -21.07061 -20.71075 -19.38377 -17.46080 -16.80947 -16.12734 -15.80130 -15.33373 -15.08465 -14.50912 -14.17780 -13.79904 -13.58791 -13.08861 -12.83494 -12.65296 -12.33435 -12.23831 -12.15963 -11.81425 -11.68135 -11.58852 -11.27478 -11.11062 -10.95566 -10.89272 -10.79097 -10.55131 -10.26721 -10.07560 -9.68231 -9.63398 -9.37793 -8.48356 -7.74471 -7.33086 -7.02467 -6.71852 -4.62943 2.49512 2.85519 3.13293 3.25938 3.32650 3.50813 3.94414 4.53689 4.74259 4.91014 5.11357 5.23997 5.31176 5.33976 5.43358 5.57499 5.61029 5.62682 5.67168 5.73705 5.83909 5.87981 5.92855 6.03243 6.05857 6.14421 6.24386 6.31862 6.32765 6.39536 6.60043 6.68352 6.73747 6.93700 7.08182 7.41016 7.46576 7.77537 7.93692 8.05337 8.31244 8.51134 8.70371 9.21291 9.73513 9.96268 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.007318 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.323225 B = 3825.114425 C = 4728.868954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 C -0.161 4.161 4 N -0.604 5.604 5 C 0.379 3.621 6 C -0.156 4.156 7 N -0.398 5.398 8 C -0.123 4.123 9 C 0.239 3.761 10 C -0.389 4.389 11 H 0.106 0.894 12 C 0.088 3.912 13 N -0.787 5.787 14 Si 0.915 3.085 15 H -0.266 1.266 16 H -0.289 1.289 17 H -0.250 1.250 18 N -0.523 5.523 19 C 0.161 3.839 20 H 0.076 0.924 21 C -0.126 4.126 22 C 0.048 3.952 23 N -0.632 5.632 24 C 0.050 3.950 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.289 0.711 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.024 0.976 38 H 0.075 0.925 39 H 0.323 0.677 40 H 0.018 0.982 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 11.434 2.227 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 C -0.219 4.219 4 N -0.321 5.321 5 C 0.137 3.863 6 C -0.318 4.318 7 N -0.110 5.110 8 C -0.291 4.291 9 C 0.112 3.888 10 C -0.421 4.421 11 H 0.124 0.876 12 C -0.135 4.135 13 N -0.410 5.410 14 Si 0.742 3.258 15 H -0.192 1.192 16 H -0.217 1.217 17 H -0.174 1.174 18 N -0.248 5.248 19 C 0.056 3.944 20 H 0.094 0.906 21 C -0.165 4.165 22 C -0.082 4.082 23 N -0.260 5.260 24 C -0.081 4.081 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.094 0.906 39 H 0.138 0.862 40 H 0.036 0.964 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.185 10.685 2.424 13.103 hybrid contribution 0.180 0.808 0.263 0.868 sum -7.005 11.493 2.687 13.725 Atomic orbital electron populations 1.22212 0.96005 1.02319 1.01398 1.20913 0.93373 0.92535 0.88855 1.22203 1.01827 0.96279 1.01590 1.46325 1.59437 1.22356 1.03985 1.19308 0.88914 0.86215 0.91890 1.22089 1.14265 0.98393 0.97087 1.67523 1.02845 1.09178 1.31417 1.22975 1.10175 1.03564 0.92369 1.19176 0.90116 0.87328 0.92180 1.19229 1.08781 1.18956 0.95177 0.87646 1.26161 0.96861 0.91634 0.98848 1.69617 1.21606 1.15374 1.34438 0.86312 0.76772 0.81341 0.81341 1.19177 1.21675 1.17393 1.68941 1.15014 1.12690 1.28195 1.21475 0.94897 0.95002 0.83033 0.90623 1.22794 0.96956 1.01993 0.94785 1.22863 0.89477 0.99351 0.96530 1.62955 1.11344 1.46590 1.05108 1.22868 0.99334 0.92259 0.93603 0.92179 0.92839 0.92189 0.89004 0.91991 0.92265 0.92717 0.85636 0.85171 0.89983 0.89379 0.92618 0.95800 0.90636 0.86232 0.96358 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.26 37.16 0.34 -1.49 16 2 C 0.15 2.00 3.03 -67.92 -0.21 1.79 16 3 C -0.16 -1.82 9.10 37.16 0.34 -1.48 16 4 N -0.60 -10.29 2.43 -157.03 -0.38 -10.67 16 5 C 0.38 8.26 6.12 -155.02 -0.95 7.31 16 6 C -0.16 -3.51 10.39 -16.78 -0.17 -3.69 16 7 N -0.40 -10.03 10.47 -12.11 -0.13 -10.16 16 8 C -0.12 -3.22 8.33 -16.59 -0.14 -3.35 16 9 C 0.24 6.33 6.04 -84.84 -0.51 5.82 16 10 C -0.39 -10.57 9.82 -37.75 -0.37 -10.94 16 11 H 0.11 3.06 8.06 -52.48 -0.42 2.64 16 12 C 0.09 2.27 5.42 -17.34 -0.09 2.17 16 13 N -0.79 -20.31 13.92 55.55 0.77 -19.54 16 14 Si 0.92 21.16 24.43 -169.99 -4.15 17.01 16 15 H -0.27 -6.01 6.65 56.52 0.38 -5.64 16 16 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.25 -6.18 6.78 56.52 0.38 -5.80 16 18 N -0.52 -12.70 6.33 -10.14 -0.06 -12.77 16 19 C 0.16 2.52 2.55 -66.57 -0.17 2.35 16 20 H 0.08 1.00 6.16 -51.93 -0.32 0.68 16 21 C -0.13 -2.05 6.29 -24.87 -0.16 -2.21 16 22 C 0.05 0.74 7.55 -1.90 -0.01 0.72 16 23 N -0.63 -11.03 6.93 -110.09 -0.76 -11.79 16 24 C 0.05 0.84 6.25 -2.75 -0.02 0.82 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.58 7.39 -51.93 -0.38 0.20 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 1.31 5.58 -51.93 -0.29 1.02 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.59 6.79 -51.93 -0.35 0.23 16 32 H 0.13 2.47 6.03 -52.49 -0.32 2.15 16 33 H 0.13 3.37 4.23 -52.48 -0.22 3.15 16 34 H 0.29 6.72 8.29 -40.82 -0.34 6.38 16 35 H 0.09 1.80 6.50 -51.93 -0.34 1.46 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.32 4.94 8.92 -39.29 -0.35 4.59 16 40 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 1.80 6.81 -51.93 -0.35 1.45 16 LS Contribution 315.09 15.07 4.75 4.75 Total: -1.00 -28.94 315.09 -7.99 -36.93 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.91 Total: 8.41 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -2.12 Total: -2.18 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.56 Total: -64.92 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.15 Total: 17.01 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.94 -7.99 -36.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158032527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.614 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds