Wall clock time and date at job start Mon Mar 30 2020 02:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 N 1.46506 * 109.47042 * 240.00395 * 2 1 3 5 5 C 1.38817 * 119.99637 * 245.52994 * 4 2 1 6 6 C 1.39971 * 119.97536 * 12.68370 * 5 4 2 7 7 N 1.32120 * 120.32255 * 179.97438 * 6 5 4 8 8 C 1.31927 * 120.27201 * 0.02803 * 7 6 5 9 9 C 1.40681 * 119.93703 * 359.97438 * 8 7 6 10 10 C 1.41264 * 120.16150 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99979 * 154.01274 * 10 9 8 12 12 C 1.40051 * 120.00138 * 334.01371 * 10 9 8 13 13 N 1.30735 * 120.00530 * 161.25175 * 12 10 9 14 14 Si 1.86808 * 119.99936 * 341.25446 * 12 10 9 15 15 H 1.48492 * 109.47178 * 95.07255 * 14 12 10 16 16 H 1.48501 * 109.46897 * 215.07588 * 14 12 10 17 17 H 1.48501 * 109.46628 * 335.07191 * 14 12 10 18 18 N 1.32240 * 119.97194 * 192.41264 * 5 4 2 19 19 C 1.46497 * 119.99984 * 65.52531 * 4 2 1 20 20 H 1.08999 * 110.27748 * 359.36754 * 19 4 2 21 21 C 1.54599 * 110.30911 * 237.16784 * 19 4 2 22 22 C 1.54938 * 102.92072 * 219.12971 * 21 19 4 23 23 N 1.48529 * 103.22454 * 37.41842 * 22 21 19 24 24 C 1.47902 * 105.82342 * 320.78717 * 23 22 21 25 25 H 1.09005 * 109.46602 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47118 * 60.00106 * 1 2 3 27 27 H 1.09001 * 109.46943 * 299.99847 * 1 2 3 28 28 H 1.08997 * 109.47118 * 119.99894 * 2 1 3 29 29 H 1.08996 * 109.47270 * 59.99836 * 3 2 1 30 30 H 1.09001 * 109.47278 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47041 * 300.00404 * 3 2 1 32 32 H 1.08001 * 119.83334 * 359.97438 * 6 5 4 33 33 H 1.08009 * 120.03357 * 180.02562 * 8 7 6 34 34 H 0.97003 * 120.00036 * 180.02562 * 13 12 10 35 35 H 1.08998 * 110.72624 * 337.49395 * 21 19 4 36 36 H 1.08996 * 110.71940 * 100.77112 * 21 19 4 37 37 H 1.08999 * 110.66691 * 278.97853 * 22 21 19 38 38 H 1.09000 * 110.66275 * 155.85116 * 22 21 19 39 39 H 1.00907 * 110.99606 * 200.27296 * 23 22 21 40 40 H 1.08995 * 109.91876 * 265.98411 * 24 23 22 41 41 H 1.09003 * 109.91442 * 144.68366 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1963 5 6 2.7192 -1.8824 -1.0721 6 6 2.7333 -2.5611 0.1519 7 7 3.3977 -3.6962 0.2776 8 6 4.0544 -4.1997 -0.7499 9 6 4.0478 -3.5268 -1.9853 10 6 4.7497 -4.0614 -3.0885 11 1 4.4361 -3.8243 -4.0945 12 6 5.8523 -4.8989 -2.8778 13 7 6.2747 -5.6779 -3.8390 14 14 6.7195 -4.9029 -1.2232 15 1 6.1763 -5.9996 -0.3823 16 1 8.1755 -5.1107 -1.4280 17 1 6.4959 -3.6012 -0.5442 18 7 3.3686 -2.3783 -2.1119 19 6 1.7670 -0.1234 -2.5234 20 1 1.1977 0.8021 -2.4370 21 6 1.0099 -1.1411 -3.4073 22 6 1.6692 -0.9512 -4.7965 23 7 3.0980 -0.7167 -4.4654 24 6 3.0972 0.1338 -3.2553 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 2.1985 -2.1550 0.9977 33 1 4.5959 -5.1281 -0.6430 34 1 7.0382 -6.2582 -3.6928 35 1 1.1629 -2.1570 -3.0432 36 1 -0.0524 -0.9009 -3.4483 37 1 1.2459 -0.0869 -5.3082 38 1 1.5571 -1.8508 -5.4016 39 1 3.5756 -0.2602 -5.2280 40 1 3.1678 1.1837 -3.5394 41 1 3.9339 -0.1365 -2.6110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158032527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:32 Heat of formation + Delta-G solvation = 43.981107 kcal Electronic energy + Delta-G solvation = -22717.094302 eV Core-core repulsion = 19631.394537 eV Total energy + Delta-G solvation = -3085.699765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41365 -39.61431 -37.42838 -35.79503 -34.47909 -33.08556 -31.45946 -30.12683 -29.07809 -27.93221 -27.38658 -24.27208 -23.82534 -22.42543 -22.03398 -20.93496 -19.16757 -18.37439 -17.75976 -17.51957 -16.83558 -16.72665 -16.17508 -15.59365 -15.08211 -14.89511 -14.85167 -14.33940 -14.05135 -13.92048 -13.50553 -13.28910 -13.19902 -13.04633 -12.89824 -12.77323 -12.71443 -12.54170 -12.28280 -12.05336 -11.96710 -11.74430 -11.59823 -11.54623 -11.41570 -11.22336 -10.27688 -9.22923 -9.01179 -8.99078 -8.34166 -6.66937 0.58812 0.97634 1.24814 1.39623 1.42983 2.06774 2.12712 2.57968 3.49732 3.65525 3.77445 3.89595 3.98568 4.02605 4.17127 4.24229 4.31215 4.34401 4.38200 4.43385 4.52153 4.65863 4.78245 4.81902 4.83202 4.95965 4.98779 5.03907 5.06462 5.10433 5.17335 5.26554 5.32625 5.36087 5.44583 5.64701 6.09400 6.17482 6.26046 6.39268 6.61035 6.72301 6.80577 7.29754 7.84375 8.05995 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.007318 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.323225 B = 3825.114425 C = 4728.868954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 C -0.153 4.153 4 N -0.594 5.594 5 C 0.377 3.623 6 C -0.146 4.146 7 N -0.411 5.411 8 C -0.155 4.155 9 C 0.231 3.769 10 C -0.419 4.419 11 H 0.070 0.930 12 C 0.064 3.936 13 N -0.814 5.814 14 Si 0.969 3.031 15 H -0.258 1.258 16 H -0.266 1.266 17 H -0.277 1.277 18 N -0.530 5.530 19 C 0.161 3.839 20 H 0.117 0.883 21 C -0.124 4.124 22 C 0.053 3.947 23 N -0.667 5.667 24 C 0.055 3.945 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.159 0.841 33 H 0.128 0.872 34 H 0.302 0.698 35 H 0.040 0.960 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.332 0.668 40 H 0.050 0.950 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.138 14.202 3.563 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 C -0.211 4.211 4 N -0.310 5.310 5 C 0.133 3.867 6 C -0.311 4.311 7 N -0.123 5.123 8 C -0.319 4.319 9 C 0.103 3.897 10 C -0.452 4.452 11 H 0.088 0.912 12 C -0.157 4.157 13 N -0.439 5.439 14 Si 0.794 3.206 15 H -0.184 1.184 16 H -0.192 1.192 17 H -0.202 1.202 18 N -0.257 5.257 19 C 0.056 3.944 20 H 0.135 0.865 21 C -0.163 4.163 22 C -0.076 4.076 23 N -0.297 5.297 24 C -0.076 4.076 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.176 0.824 33 H 0.145 0.855 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.148 0.852 40 H 0.068 0.932 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.903 13.453 3.740 16.560 hybrid contribution 0.510 0.164 -0.101 0.546 sum -8.393 13.617 3.638 16.404 Atomic orbital electron populations 1.22136 0.93676 1.01841 1.03405 1.21285 0.95105 0.93459 0.86803 1.22136 1.00659 0.94632 1.03643 1.46651 1.57598 1.20587 1.06160 1.19630 0.88395 0.87643 0.91032 1.22743 1.12606 0.97356 0.98399 1.67525 1.03236 1.10283 1.31264 1.22849 1.12199 1.04182 0.92702 1.19238 0.90285 0.87975 0.92177 1.19071 1.10821 1.21455 0.93857 0.91167 1.26621 0.96712 0.91062 1.01291 1.69607 1.22608 1.16033 1.35663 0.85499 0.77115 0.79955 0.78027 1.18423 1.19158 1.20206 1.68990 1.15249 1.12151 1.29261 1.21703 0.94641 0.96154 0.81876 0.86521 1.22741 0.98967 0.99436 0.95169 1.22826 0.88481 1.00079 0.96245 1.62821 1.13022 1.47837 1.05988 1.22741 0.98321 0.93683 0.92853 0.93912 0.91670 0.89365 0.89927 0.89168 0.94072 0.91433 0.82371 0.85526 0.88692 0.94132 0.89569 0.92089 0.92398 0.85215 0.93228 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.26 71.98 0.67 -2.13 16 2 C 0.14 3.21 3.03 44.99 0.14 3.34 16 3 C -0.15 -2.80 9.10 71.98 0.65 -2.14 16 4 N -0.59 -19.03 2.43 -650.73 -1.58 -20.60 16 5 C 0.38 16.36 6.12 133.38 0.82 17.18 16 6 C -0.15 -6.45 10.39 85.07 0.88 -5.57 16 7 N -0.41 -20.81 10.47 -192.22 -2.01 -22.82 16 8 C -0.16 -8.34 8.33 85.28 0.71 -7.63 16 9 C 0.23 12.78 6.04 40.15 0.24 13.03 16 10 C -0.42 -24.21 9.82 23.45 0.23 -23.98 16 11 H 0.07 4.42 8.06 -2.91 -0.02 4.40 16 12 C 0.06 3.41 5.42 85.30 0.46 3.88 16 13 N -0.81 -43.46 13.92 21.84 0.30 -43.16 16 14 Si 0.97 44.90 24.43 68.60 1.68 46.57 16 15 H -0.26 -11.56 6.65 99.48 0.66 -10.90 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.28 -13.95 6.78 99.48 0.67 -13.28 16 18 N -0.53 -26.54 6.33 -186.00 -1.18 -27.72 16 19 C 0.16 4.57 2.55 45.87 0.12 4.69 16 20 H 0.12 2.44 6.16 -2.39 -0.01 2.43 16 21 C -0.12 -3.82 6.29 31.80 0.20 -3.62 16 22 C 0.05 1.58 7.55 86.65 0.65 2.23 16 23 N -0.67 -23.25 6.93 -502.21 -3.48 -26.73 16 24 C 0.05 1.75 6.25 86.45 0.54 2.29 16 25 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.06 1.07 7.39 -2.39 -0.02 1.05 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 2.10 5.58 -2.39 -0.01 2.08 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.08 6.79 -2.38 -0.02 1.07 16 32 H 0.16 5.85 6.03 -2.91 -0.02 5.84 16 33 H 0.13 6.75 4.23 -2.91 -0.01 6.74 16 34 H 0.30 14.27 8.29 -92.71 -0.77 13.50 16 35 H 0.04 1.65 6.50 -2.39 -0.02 1.64 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.33 10.10 8.92 -89.69 -0.80 9.30 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.05 1.86 6.81 -2.39 -0.02 1.85 16 Total: -1.00 -67.07 315.09 0.22 -66.85 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.17 Total: 26.04 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 6.31 Total: 1.58 kcal Atomic # 7 Polarization: -133.10 SS G_CDS: -7.94 Total: -141.04 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.68 Total: 46.57 kcal Total: -67.07 0.22 -66.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158032527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.835 kcal (2) G-P(sol) polarization free energy of solvation -67.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds