Wall clock time and date at job start Mon Mar 30 2020 01:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.49901 * 2 1 4 4 N 1.46898 * 109.47318 * 59.91651 * 3 2 1 5 5 C 1.53114 * 109.50298 * 239.92073 * 2 1 3 6 6 C 1.53118 * 109.16273 * 297.66781 * 5 2 1 7 7 C 1.53039 * 109.27980 * 302.35047 * 6 5 2 8 8 N 1.46844 * 109.52092 * 59.17636 * 7 6 5 9 9 C 1.38836 * 110.99795 * 174.16106 * 8 7 6 10 10 C 1.39957 * 119.96808 * 236.04527 * 9 8 7 11 11 N 1.32123 * 120.31791 * 180.02562 * 10 9 8 12 12 C 1.31936 * 120.27227 * 0.02562 * 11 10 9 13 13 C 1.40674 * 119.92992 * 359.97438 * 12 11 10 14 14 C 1.41277 * 120.15598 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00168 * 154.72356 * 14 13 12 16 16 C 1.40051 * 119.99925 * 334.72322 * 14 13 12 17 17 N 1.30734 * 120.00028 * 334.13329 * 16 14 13 18 18 Si 1.86800 * 120.00207 * 154.13346 * 16 14 13 19 19 H 1.48501 * 109.47526 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.46919 * 300.00001 * 18 16 14 21 21 H 1.48495 * 109.47259 * 59.99786 * 18 16 14 22 22 N 1.32230 * 119.96889 * 56.34916 * 9 8 7 23 23 C 1.46848 * 111.20155 * 298.25500 * 8 7 6 24 24 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47139 * 300.07825 * 1 2 3 26 26 H 1.09001 * 109.46950 * 60.08613 * 1 2 3 27 27 H 1.09000 * 109.47002 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46823 * 299.91783 * 3 2 1 29 29 H 1.00901 * 110.99477 * 56.04885 * 4 3 2 30 30 H 1.00894 * 110.99851 * 179.97438 * 4 3 2 31 31 H 1.09012 * 109.52011 * 177.76398 * 5 2 1 32 32 H 1.08999 * 109.57594 * 57.61231 * 5 2 1 33 33 H 1.08997 * 109.50284 * 182.40550 * 6 5 2 34 34 H 1.08999 * 109.49742 * 62.28829 * 6 5 2 35 35 H 1.08994 * 109.45886 * 299.16423 * 7 6 5 36 36 H 1.08999 * 109.45753 * 179.19094 * 7 6 5 37 37 H 1.08007 * 119.84628 * 0.04433 * 10 9 8 38 38 H 1.07997 * 120.03239 * 180.02562 * 12 11 10 39 39 H 0.97001 * 120.00320 * 354.27352 * 17 16 14 40 40 H 1.08998 * 109.46207 * 181.75825 * 23 8 7 41 41 H 1.08993 * 109.46214 * 301.73384 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4423 0.0000 4 7 1.5498 2.1357 1.1984 5 6 2.0412 -0.7234 -1.2489 6 6 1.5760 -2.1817 -1.2109 7 6 2.0864 -2.8416 0.0721 8 7 1.5692 -2.1135 1.2377 9 6 1.9053 -2.7618 2.4185 10 6 0.9025 -3.1368 3.3199 11 7 1.2145 -3.7537 4.4459 12 6 2.4748 -4.0211 4.7306 13 6 3.4915 -3.6491 3.8324 14 6 4.8424 -3.9335 4.1322 15 1 5.5624 -4.0375 3.3340 16 6 5.2480 -4.0807 5.4646 17 7 4.5793 -3.4906 6.4204 18 14 6.7445 -5.1204 5.8760 19 1 6.9613 -5.1164 7.3451 20 1 6.5218 -6.5136 5.4128 21 1 7.9396 -4.5581 5.1973 22 7 3.1729 -3.0190 2.6932 23 6 2.0418 -0.7232 1.2479 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5150 0.8893 26 1 -0.3633 0.5125 -0.8908 27 1 3.1308 1.4418 0.0005 28 1 1.6789 1.9558 -0.8907 29 1 1.8179 1.6424 2.0368 30 1 1.8741 3.0908 1.2218 31 1 3.1306 -0.6890 -1.2695 32 1 1.6446 -0.2375 -2.1404 33 1 1.9726 -2.7128 -2.0761 34 1 0.4867 -2.2166 -1.2296 35 1 3.1760 -2.8185 0.0835 36 1 1.7447 -3.8760 0.1090 37 1 -0.1314 -2.9213 3.0940 38 1 2.7254 -4.5258 5.6519 39 1 3.8539 -2.8847 6.2023 40 1 1.6677 -0.2190 2.1389 41 1 3.1316 -0.7101 1.2538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158678473.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:48 Heat of formation + Delta-G solvation = 28.311821 kcal Electronic energy + Delta-G solvation = -22092.210178 eV Core-core repulsion = 19005.830943 eV Total energy + Delta-G solvation = -3086.379236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -40.13005 -38.77268 -35.64192 -34.37606 -33.26732 -31.86875 -30.66889 -28.84595 -26.71053 -26.07005 -24.96315 -24.35354 -22.37558 -21.64076 -20.73620 -18.32908 -18.14140 -16.74184 -16.00449 -15.44618 -15.30064 -15.07652 -14.50969 -14.45828 -14.19030 -13.87045 -13.65949 -13.30939 -13.00699 -12.63657 -12.57469 -12.09197 -11.92384 -11.64257 -11.50360 -11.22156 -11.10736 -10.85268 -10.53450 -10.49523 -10.38475 -10.17866 -10.05863 -9.99670 -9.75874 -9.21428 -8.69120 -8.37030 -7.93274 -7.52858 -7.41687 -4.85300 2.23095 2.64706 3.05026 3.14496 3.26760 3.83399 4.19205 4.34082 4.49834 4.79548 4.91757 5.06385 5.22875 5.35790 5.43310 5.47515 5.65831 5.69023 5.73458 5.76805 5.85545 5.90784 6.01510 6.04361 6.11467 6.16509 6.21513 6.26229 6.37064 6.44483 6.48037 6.67368 6.74999 6.94092 7.09004 7.30098 7.37270 7.39043 7.41816 7.69684 7.86373 8.22977 8.50508 8.95967 9.44727 9.74823 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023233 B = 0.004773 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.894973 B = 5864.975273 C = 5948.711350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.056 4.056 3 C 0.073 3.927 4 N -0.848 5.848 5 C -0.110 4.110 6 C -0.115 4.115 7 C 0.063 3.937 8 N -0.473 5.473 9 C 0.275 3.725 10 C -0.079 4.079 11 N -0.422 5.422 12 C -0.052 4.052 13 C 0.217 3.783 14 C -0.479 4.479 15 H 0.086 0.914 16 C 0.040 3.960 17 N -0.778 5.778 18 Si 1.074 2.926 19 H -0.270 1.270 20 H -0.271 1.271 21 H -0.273 1.273 22 N -0.554 5.554 23 C 0.076 3.924 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.023 0.977 28 H 0.071 0.929 29 H 0.342 0.658 30 H 0.337 0.663 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.299 0.701 40 H 0.071 0.929 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.877 5.901 -10.371 12.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.057 4.057 3 C -0.058 4.058 4 N -0.378 5.378 5 C -0.148 4.148 6 C -0.153 4.153 7 C -0.065 4.065 8 N -0.197 5.197 9 C 0.039 3.961 10 C -0.238 4.238 11 N -0.134 5.134 12 C -0.222 4.222 13 C 0.090 3.910 14 C -0.512 4.512 15 H 0.104 0.896 16 C -0.185 4.185 17 N -0.401 5.401 18 Si 0.896 3.104 19 H -0.195 1.195 20 H -0.196 1.196 21 H -0.198 1.198 22 N -0.276 5.276 23 C -0.051 4.051 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.156 0.844 30 H 0.149 0.851 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.287 5.230 -9.408 11.005 hybrid contribution 0.982 0.789 -1.004 1.611 sum -1.304 6.018 -10.412 12.097 Atomic orbital electron populations 1.21649 0.93074 1.01994 1.01213 1.20619 0.97482 0.92909 0.94642 1.21804 0.96259 0.94105 0.93672 1.58772 1.67751 1.06166 1.05148 1.21613 1.00279 0.95819 0.97062 1.21618 1.01802 0.95191 0.96643 1.21983 0.98265 0.97176 0.89045 1.60044 1.57811 1.01672 1.00123 1.20595 0.90170 0.94356 0.91026 1.22367 0.98586 1.09721 0.93156 1.67830 1.21004 1.07994 1.16553 1.23485 0.88409 1.06875 1.03402 1.19221 0.95045 0.88819 0.87964 1.20385 0.93708 1.41320 0.95781 0.89570 1.27281 1.03229 0.96252 0.91717 1.70460 1.16338 1.16476 1.36781 0.83499 0.73310 0.76196 0.77368 1.19470 1.19602 1.19842 1.68934 1.18310 1.17644 1.22745 1.22013 0.97535 0.88029 0.97551 0.91699 0.91913 0.94096 0.95857 0.91071 0.84365 0.85139 0.92406 0.91936 0.91785 0.90851 0.93677 0.91380 0.84584 0.83692 0.88738 0.91090 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 7.88 37.16 0.29 -1.32 16 2 C -0.06 -0.74 0.59 -154.42 -0.09 -0.83 16 3 C 0.07 0.85 5.75 -3.82 -0.02 0.83 16 4 N -0.85 -9.76 8.83 -10.37 -0.09 -9.85 16 5 C -0.11 -1.34 4.79 -26.61 -0.13 -1.47 16 6 C -0.11 -1.49 5.74 -26.65 -0.15 -1.65 16 7 C 0.06 1.08 5.20 -3.83 -0.02 1.06 16 8 N -0.47 -8.85 3.91 -173.07 -0.68 -9.53 16 9 C 0.28 6.32 5.31 -155.02 -0.82 5.50 16 10 C -0.08 -1.87 11.17 -16.78 -0.19 -2.05 16 11 N -0.42 -10.73 10.47 -12.11 -0.13 -10.85 16 12 C -0.05 -1.37 9.14 -16.59 -0.15 -1.52 16 13 C 0.22 5.80 6.14 -84.84 -0.52 5.28 16 14 C -0.48 -12.46 9.22 -37.75 -0.35 -12.81 16 15 H 0.09 2.23 7.97 -52.49 -0.42 1.81 16 16 C 0.04 0.96 4.92 -17.34 -0.09 0.87 16 17 N -0.78 -19.73 12.31 55.55 0.68 -19.05 16 18 Si 1.07 20.33 30.00 -169.99 -5.10 15.23 16 19 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 21 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 22 N -0.55 -14.14 9.85 -10.14 -0.10 -14.24 16 23 C 0.08 1.29 3.69 -3.83 -0.01 1.28 16 24 H 0.06 0.91 6.01 -51.93 -0.31 0.60 16 25 H 0.06 0.89 7.60 -51.93 -0.39 0.50 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.34 4.29 7.06 -39.29 -0.28 4.01 16 30 H 0.34 3.17 9.08 -39.30 -0.36 2.81 16 31 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.94 6.58 -51.93 -0.34 0.59 16 35 H 0.04 0.86 7.95 -51.93 -0.41 0.44 16 36 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.14 2.90 8.06 -52.48 -0.42 2.48 16 38 H 0.15 3.82 6.48 -52.49 -0.34 3.48 16 39 H 0.30 7.93 6.71 -40.82 -0.27 7.66 16 40 H 0.07 1.26 6.58 -51.93 -0.34 0.92 16 41 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 LS Contribution 321.40 15.07 4.84 4.84 Total: -1.00 -27.61 321.40 -8.89 -36.49 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -6.07 Total: 13.78 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -2.25 Total: -6.82 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -0.31 Total: -63.52 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.10 Total: 15.23 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.61 -8.89 -36.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158678473.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.806 kcal (2) G-P(sol) polarization free energy of solvation -27.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds