Wall clock time and date at job start Mon Mar 30 2020 01:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.49901 * 2 1 4 4 N 1.46898 * 109.47318 * 59.91651 * 3 2 1 5 5 C 1.53114 * 109.50298 * 239.92073 * 2 1 3 6 6 C 1.53118 * 109.16273 * 297.66781 * 5 2 1 7 7 C 1.53039 * 109.27980 * 302.35047 * 6 5 2 8 8 N 1.46844 * 109.52092 * 59.17636 * 7 6 5 9 9 C 1.38836 * 110.99795 * 174.16106 * 8 7 6 10 10 C 1.39957 * 119.96808 * 236.04527 * 9 8 7 11 11 N 1.32123 * 120.31791 * 180.02562 * 10 9 8 12 12 C 1.31936 * 120.27227 * 0.02562 * 11 10 9 13 13 C 1.40674 * 119.92992 * 359.97438 * 12 11 10 14 14 C 1.41277 * 120.15598 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00168 * 154.72356 * 14 13 12 16 16 C 1.40051 * 119.99925 * 334.72322 * 14 13 12 17 17 N 1.30734 * 120.00028 * 334.13329 * 16 14 13 18 18 Si 1.86800 * 120.00207 * 154.13346 * 16 14 13 19 19 H 1.48501 * 109.47526 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.46919 * 300.00001 * 18 16 14 21 21 H 1.48495 * 109.47259 * 59.99786 * 18 16 14 22 22 N 1.32230 * 119.96889 * 56.34916 * 9 8 7 23 23 C 1.46848 * 111.20155 * 298.25500 * 8 7 6 24 24 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47139 * 300.07825 * 1 2 3 26 26 H 1.09001 * 109.46950 * 60.08613 * 1 2 3 27 27 H 1.09000 * 109.47002 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46823 * 299.91783 * 3 2 1 29 29 H 1.00901 * 110.99477 * 56.04885 * 4 3 2 30 30 H 1.00894 * 110.99851 * 179.97438 * 4 3 2 31 31 H 1.09012 * 109.52011 * 177.76398 * 5 2 1 32 32 H 1.08999 * 109.57594 * 57.61231 * 5 2 1 33 33 H 1.08997 * 109.50284 * 182.40550 * 6 5 2 34 34 H 1.08999 * 109.49742 * 62.28829 * 6 5 2 35 35 H 1.08994 * 109.45886 * 299.16423 * 7 6 5 36 36 H 1.08999 * 109.45753 * 179.19094 * 7 6 5 37 37 H 1.08007 * 119.84628 * 0.04433 * 10 9 8 38 38 H 1.07997 * 120.03239 * 180.02562 * 12 11 10 39 39 H 0.97001 * 120.00320 * 354.27352 * 17 16 14 40 40 H 1.08998 * 109.46207 * 181.75825 * 23 8 7 41 41 H 1.08993 * 109.46214 * 301.73384 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4423 0.0000 4 7 1.5498 2.1357 1.1984 5 6 2.0412 -0.7234 -1.2489 6 6 1.5760 -2.1817 -1.2109 7 6 2.0864 -2.8416 0.0721 8 7 1.5692 -2.1135 1.2377 9 6 1.9053 -2.7618 2.4185 10 6 0.9025 -3.1368 3.3199 11 7 1.2145 -3.7537 4.4459 12 6 2.4748 -4.0211 4.7306 13 6 3.4915 -3.6491 3.8324 14 6 4.8424 -3.9335 4.1322 15 1 5.5624 -4.0375 3.3340 16 6 5.2480 -4.0807 5.4646 17 7 4.5793 -3.4906 6.4204 18 14 6.7445 -5.1204 5.8760 19 1 6.9613 -5.1164 7.3451 20 1 6.5218 -6.5136 5.4128 21 1 7.9396 -4.5581 5.1973 22 7 3.1729 -3.0190 2.6932 23 6 2.0418 -0.7232 1.2479 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5150 0.8893 26 1 -0.3633 0.5125 -0.8908 27 1 3.1308 1.4418 0.0005 28 1 1.6789 1.9558 -0.8907 29 1 1.8179 1.6424 2.0368 30 1 1.8741 3.0908 1.2218 31 1 3.1306 -0.6890 -1.2695 32 1 1.6446 -0.2375 -2.1404 33 1 1.9726 -2.7128 -2.0761 34 1 0.4867 -2.2166 -1.2296 35 1 3.1760 -2.8185 0.0835 36 1 1.7447 -3.8760 0.1090 37 1 -0.1314 -2.9213 3.0940 38 1 2.7254 -4.5258 5.6519 39 1 3.8539 -2.8847 6.2023 40 1 1.6677 -0.2190 2.1389 41 1 3.1316 -0.7101 1.2538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158678473.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:47 Heat of formation + Delta-G solvation = 9.314200 kcal Electronic energy + Delta-G solvation = -22093.033977 eV Core-core repulsion = 19005.830943 eV Total energy + Delta-G solvation = -3087.203034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.75640 -40.34423 -37.07730 -36.18047 -34.69454 -33.61024 -31.80075 -30.66007 -28.05046 -27.81110 -26.18690 -25.77577 -24.23849 -23.24600 -22.08398 -20.17741 -19.36718 -18.34781 -17.71185 -17.28054 -16.66204 -16.34975 -15.94692 -15.72475 -15.61742 -15.18210 -15.05730 -14.91263 -14.47812 -14.03973 -13.92094 -13.71924 -13.56784 -12.92655 -12.89439 -12.60436 -12.31290 -12.23551 -12.04608 -12.01828 -11.88653 -11.71499 -11.56118 -11.30102 -11.23585 -11.02217 -10.05189 -9.88533 -9.61308 -9.51245 -9.29585 -6.88425 0.29340 0.67981 1.49496 1.59167 1.81601 2.23795 2.47932 2.65163 3.32683 3.52341 3.69351 3.81458 3.86703 3.94654 3.97841 4.14714 4.22426 4.27187 4.33624 4.50195 4.58735 4.66318 4.73363 4.74806 4.80865 4.84886 4.91055 4.99260 5.08149 5.10360 5.29679 5.31169 5.33045 5.39271 5.48072 5.65505 5.68776 5.91662 5.98036 6.15162 6.30150 6.52117 6.57048 6.96396 7.45671 7.74742 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023233 B = 0.004773 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.894973 B = 5864.975273 C = 5948.711350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 C 0.076 3.924 4 N -0.852 5.852 5 C -0.107 4.107 6 C -0.105 4.105 7 C 0.062 3.938 8 N -0.466 5.466 9 C 0.281 3.719 10 C -0.084 4.084 11 N -0.429 5.429 12 C -0.075 4.075 13 C 0.195 3.805 14 C -0.501 4.501 15 H 0.081 0.919 16 C 0.012 3.988 17 N -0.788 5.788 18 Si 1.127 2.873 19 H -0.264 1.264 20 H -0.259 1.259 21 H -0.256 1.256 22 N -0.571 5.571 23 C 0.083 3.917 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.019 0.981 28 H 0.093 0.907 29 H 0.334 0.666 30 H 0.349 0.651 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.021 0.979 36 H 0.057 0.943 37 H 0.161 0.839 38 H 0.137 0.863 39 H 0.282 0.718 40 H 0.058 0.942 41 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 6.560 -12.352 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.049 4.049 3 C -0.055 4.055 4 N -0.383 5.383 5 C -0.145 4.145 6 C -0.143 4.143 7 C -0.065 4.065 8 N -0.190 5.190 9 C 0.043 3.957 10 C -0.245 4.245 11 N -0.141 5.141 12 C -0.242 4.242 13 C 0.068 3.932 14 C -0.534 4.534 15 H 0.099 0.901 16 C -0.208 4.208 17 N -0.410 5.410 18 Si 0.941 3.059 19 H -0.188 1.188 20 H -0.183 1.183 21 H -0.180 1.180 22 N -0.294 5.294 23 C -0.045 4.045 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.038 0.962 28 H 0.111 0.889 29 H 0.147 0.853 30 H 0.163 0.837 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.178 0.822 38 H 0.155 0.845 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -2.399 5.910 -11.396 13.060 hybrid contribution 0.915 0.660 -0.466 1.221 sum -1.484 6.570 -11.862 13.641 Atomic orbital electron populations 1.21579 0.92492 1.01511 1.01696 1.20618 0.97737 0.93554 0.93033 1.21804 0.96074 0.93143 0.94499 1.58792 1.67802 1.06908 1.04752 1.21635 1.00107 0.95216 0.97577 1.21602 1.02328 0.95628 0.94692 1.22077 0.96880 0.97174 0.90378 1.60194 1.57414 1.02337 0.99005 1.21036 0.89268 0.93150 0.92215 1.22829 0.99907 1.09023 0.92694 1.67790 1.20678 1.08252 1.17424 1.23302 0.88791 1.08563 1.03568 1.19515 0.95726 0.89327 0.88643 1.20620 0.93526 1.42501 0.96712 0.90075 1.28808 1.05080 0.96065 0.90840 1.70574 1.16410 1.17000 1.37001 0.82900 0.70249 0.75104 0.77634 1.18812 1.18318 1.17966 1.69010 1.19781 1.17999 1.22592 1.22029 0.95866 0.87092 0.99483 0.92621 0.93217 0.91817 0.96245 0.88878 0.85333 0.83750 0.92939 0.88703 0.89427 0.89855 0.96085 0.92439 0.82170 0.84530 0.90543 0.92401 0.97056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 7.88 71.98 0.57 -2.16 16 2 C -0.05 -1.19 0.59 -52.13 -0.03 -1.22 16 3 C 0.08 1.60 5.75 86.31 0.50 2.10 16 4 N -0.85 -18.36 8.83 -186.71 -1.65 -20.01 16 5 C -0.11 -2.30 4.79 30.67 0.15 -2.15 16 6 C -0.10 -2.45 5.74 30.65 0.18 -2.27 16 7 C 0.06 2.10 5.20 86.33 0.45 2.55 16 8 N -0.47 -17.39 3.91 -701.48 -2.74 -20.13 16 9 C 0.28 13.15 5.31 133.37 0.71 13.86 16 10 C -0.08 -4.01 11.17 85.07 0.95 -3.06 16 11 N -0.43 -22.35 10.47 -192.24 -2.01 -24.36 16 12 C -0.07 -4.07 9.14 85.27 0.78 -3.29 16 13 C 0.19 10.81 6.14 40.15 0.25 11.06 16 14 C -0.50 -26.86 9.22 23.46 0.22 -26.65 16 15 H 0.08 4.31 7.97 -2.91 -0.02 4.29 16 16 C 0.01 0.57 4.92 85.30 0.42 0.99 16 17 N -0.79 -40.99 12.31 21.84 0.27 -40.72 16 18 Si 1.13 40.42 30.00 68.60 2.06 42.48 16 19 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 20 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 21 H -0.26 -8.42 7.11 99.48 0.71 -7.72 16 22 N -0.57 -30.12 9.85 -186.00 -1.83 -31.96 16 23 C 0.08 2.80 3.69 86.33 0.32 3.12 16 24 H 0.05 1.42 6.01 -2.39 -0.01 1.40 16 25 H 0.05 1.31 7.60 -2.39 -0.02 1.29 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 27 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.33 8.26 7.06 -89.69 -0.63 7.63 16 30 H 0.35 5.98 9.08 -89.70 -0.81 5.17 16 31 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.84 6.58 -2.39 -0.02 1.82 16 35 H 0.02 0.80 7.95 -2.39 -0.02 0.78 16 36 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 37 H 0.16 6.73 8.06 -2.91 -0.02 6.70 16 38 H 0.14 7.55 6.48 -2.91 -0.02 7.53 16 39 H 0.28 15.63 6.71 -92.71 -0.62 15.01 16 40 H 0.06 2.09 6.58 -2.39 -0.02 2.08 16 41 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 Total: -1.00 -61.66 321.40 -0.72 -62.37 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: -0.25 Total: 39.46 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 5.44 Total: -7.14 kcal Atomic # 7 Polarization: -129.20 SS G_CDS: -7.97 Total: -137.17 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.06 Total: 42.48 kcal Total: -61.66 -0.72 -62.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158678473.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.688 kcal (2) G-P(sol) polarization free energy of solvation -61.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds