Wall clock time and date at job start Mon Mar 30 2020 02:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47906 * 111.00350 * 2 1 4 4 C 1.53991 * 107.05675 * 145.84723 * 3 2 1 5 5 C 1.54595 * 105.14272 * 358.77419 * 4 3 2 6 6 C 1.49007 * 110.97306 * 117.44566 * 2 1 3 7 7 H 1.09004 * 110.67939 * 318.61655 * 6 2 1 8 8 C 1.52999 * 110.86164 * 81.88990 * 6 2 1 9 9 C 1.53001 * 109.46720 * 177.23228 * 8 6 2 10 10 N 1.46506 * 109.47280 * 174.81684 * 9 8 6 11 11 C 1.38824 * 120.00159 * 180.02562 * 10 9 8 12 12 C 1.39960 * 119.97381 * 359.71917 * 11 10 9 13 13 N 1.32121 * 120.31944 * 179.75495 * 12 11 10 14 14 C 1.31931 * 120.27528 * 0.52443 * 13 12 11 15 15 C 1.40688 * 119.92623 * 359.73551 * 14 13 12 16 16 C 1.41282 * 120.15107 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99591 * 154.13847 * 16 15 14 18 18 C 1.40057 * 120.00040 * 334.13395 * 16 15 14 19 19 N 1.30729 * 119.99788 * 340.85557 * 18 16 15 20 20 Si 1.86794 * 119.99749 * 160.84816 * 18 16 15 21 21 H 1.48499 * 109.47306 * 94.89620 * 20 18 16 22 22 H 1.48508 * 109.47059 * 214.89211 * 20 18 16 23 23 H 1.48502 * 109.47426 * 334.89408 * 20 18 16 24 24 N 1.32239 * 119.96692 * 180.02562 * 11 10 9 25 25 H 1.09003 * 109.47091 * 56.52228 * 1 2 3 26 26 H 1.08998 * 109.47493 * 176.53058 * 1 2 3 27 27 H 1.09010 * 109.46754 * 296.53167 * 1 2 3 28 28 H 1.09000 * 109.91511 * 26.49215 * 3 2 1 29 29 H 1.08998 * 110.07828 * 265.29167 * 3 2 1 30 30 H 1.08996 * 110.30649 * 239.86119 * 4 3 2 31 31 H 1.09000 * 110.31173 * 117.69207 * 4 3 2 32 32 H 1.09000 * 110.72418 * 96.39985 * 5 4 3 33 33 H 1.08996 * 110.72740 * 219.50446 * 5 4 3 34 34 H 1.08996 * 109.47622 * 297.22845 * 8 6 2 35 35 H 1.08995 * 109.47183 * 57.23618 * 8 6 2 36 36 H 1.08999 * 109.47210 * 294.81425 * 9 8 6 37 37 H 1.08996 * 109.47250 * 54.81635 * 9 8 6 38 38 H 0.97001 * 119.99327 * 359.97438 * 10 9 8 39 39 H 1.08005 * 119.83703 * 0.02562 * 12 11 10 40 40 H 1.07993 * 120.03550 * 179.75659 * 14 13 12 41 41 H 0.97008 * 119.99387 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2984 1.3658 0.8265 5 6 3.4492 -0.0931 1.3153 6 6 2.0023 -0.6413 1.2348 7 1 1.4257 -0.3349 2.1075 8 6 2.0090 -2.1651 1.0979 9 6 2.6252 -2.7870 2.3528 10 7 2.5195 -4.2463 2.2769 11 6 3.0131 -5.0326 3.3090 12 6 3.6169 -4.4310 4.4191 13 7 4.0847 -5.1725 5.4075 14 6 3.9959 -6.4876 5.3519 15 6 3.3960 -7.1042 4.2387 16 6 3.2989 -8.5122 4.1741 17 1 2.5177 -8.9732 3.5879 18 6 4.2158 -9.3101 4.8700 19 7 5.3563 -8.8052 5.2617 20 14 3.8089 -11.0955 5.2386 21 1 4.3903 -11.9638 4.1835 22 1 4.3783 -11.4708 6.5579 23 1 2.3346 -11.2714 5.2677 24 7 2.9178 -6.3497 3.2396 25 1 -0.3633 0.5669 -0.8572 26 1 -0.3634 -1.0257 -0.0622 27 1 -0.3633 0.4591 0.9195 28 1 1.2759 2.0562 0.4571 29 1 2.2117 1.7000 -1.0203 30 1 3.2138 2.0427 1.6766 31 1 4.1471 1.6453 0.2023 32 1 4.1115 -0.6542 0.6561 33 1 3.8154 -0.1201 2.3416 34 1 0.9867 -2.5238 0.9792 35 1 2.5973 -2.4490 0.2254 36 1 3.6749 -2.5019 2.4216 37 1 2.0930 -2.4296 3.2343 38 1 2.1039 -4.6630 1.5058 39 1 3.6969 -3.3551 4.4700 40 1 4.3831 -7.0902 6.1602 41 1 5.9911 -9.3578 5.7440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160971134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:00 Heat of formation + Delta-G solvation = 35.570073 kcal Electronic energy + Delta-G solvation = -20644.308236 eV Core-core repulsion = 17558.243742 eV Total energy + Delta-G solvation = -3086.064494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.44244 -38.91763 -35.88093 -33.94207 -32.66790 -32.28829 -31.46916 -28.83288 -26.62775 -25.89219 -25.69678 -23.16056 -22.07832 -21.33334 -20.80254 -20.16883 -17.66051 -16.53265 -16.06019 -15.89302 -15.30030 -14.97545 -14.93486 -14.84017 -14.50811 -13.90527 -13.69811 -13.38940 -13.09089 -12.83920 -12.58262 -12.02746 -11.83474 -11.66073 -11.47154 -11.42780 -11.31044 -11.18530 -11.04114 -10.86163 -10.76879 -10.65843 -10.43289 -9.85965 -9.67566 -9.45204 -8.68569 -8.51611 -7.29558 -6.97788 -6.69235 -4.62675 2.64385 3.03200 3.05960 3.11049 3.19483 3.58758 3.83541 4.09417 4.38114 4.49925 4.56068 4.74573 4.92688 5.10999 5.14955 5.20652 5.27274 5.31867 5.41992 5.49824 5.63223 5.65811 5.71730 5.76320 5.80776 5.92264 6.00964 6.10891 6.17327 6.19982 6.29393 6.52629 6.66359 6.79583 6.91652 7.03336 7.14601 7.73417 7.88604 8.23499 8.31383 8.54204 8.76965 9.38849 9.85616 10.02068 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.043945 B = 0.002958 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.008964 B = 9464.542924 C = 9856.930434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.519 5.519 3 C 0.036 3.964 4 C -0.132 4.132 5 C -0.122 4.122 6 C 0.069 3.931 7 H 0.057 0.943 8 C -0.113 4.113 9 C 0.141 3.859 10 N -0.736 5.736 11 C 0.371 3.629 12 C -0.157 4.157 13 N -0.418 5.418 14 C -0.040 4.040 15 C 0.267 3.733 16 C -0.428 4.428 17 H 0.089 0.911 18 C 0.078 3.922 19 N -0.779 5.779 20 Si 0.921 3.079 21 H -0.268 1.268 22 H -0.272 1.272 23 H -0.257 1.257 24 N -0.585 5.585 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.027 0.973 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.393 0.607 39 H 0.122 0.878 40 H 0.152 0.848 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 14.696 -7.242 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.244 5.244 3 C -0.092 4.092 4 C -0.171 4.171 5 C -0.160 4.160 6 C -0.040 4.040 7 H 0.075 0.925 8 C -0.151 4.151 9 C 0.015 3.985 10 N -0.373 5.373 11 C 0.131 3.869 12 C -0.317 4.317 13 N -0.130 5.130 14 C -0.211 4.211 15 C 0.138 3.862 16 C -0.462 4.462 17 H 0.107 0.893 18 C -0.144 4.144 19 N -0.404 5.404 20 Si 0.745 3.255 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.181 1.181 24 N -0.313 5.313 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.227 0.773 39 H 0.139 0.861 40 H 0.169 0.831 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.781 14.647 -7.526 17.147 hybrid contribution -0.522 -0.376 0.489 0.808 sum -5.303 14.271 -7.036 16.772 Atomic orbital electron populations 1.22528 0.87928 1.02535 1.00371 1.64759 1.08017 1.14588 1.36988 1.22838 0.95932 0.89784 1.00628 1.22401 0.97640 0.97469 0.99541 1.22584 0.96209 0.95231 1.01997 1.22803 0.95570 0.94462 0.91119 0.92502 1.21604 1.01854 0.93142 0.98502 1.21079 1.00084 0.80445 0.96919 1.44092 1.67434 1.03682 1.22049 1.19243 0.90349 0.89792 0.87504 1.21978 1.15657 0.98455 0.95577 1.67687 1.11794 1.07614 1.25907 1.23379 1.07806 0.89367 1.00526 1.19062 0.86719 0.93828 0.86624 1.19321 1.12099 0.89330 1.25432 0.89295 1.26015 0.93441 1.02028 0.92889 1.69792 1.05014 1.39018 1.26540 0.86084 0.80396 0.80419 0.78627 1.19319 1.19727 1.18091 1.68439 1.30840 1.02528 1.29474 0.91513 0.91015 0.95439 0.93950 0.90432 0.91538 0.90938 0.90319 0.90566 0.91448 0.90433 0.92496 0.92960 0.77283 0.86055 0.83110 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.29 60.07 0.56 0.69 16 2 N -0.52 -5.19 5.26 -230.44 -1.21 -6.41 16 3 C 0.04 0.31 6.70 -2.75 -0.02 0.29 16 4 C -0.13 -1.08 6.93 -25.38 -0.18 -1.25 16 5 C -0.12 -1.17 5.59 -24.87 -0.14 -1.31 16 6 C 0.07 0.71 2.40 -65.52 -0.16 0.55 16 7 H 0.06 0.59 7.92 -51.93 -0.41 0.18 16 8 C -0.11 -1.30 5.08 -26.73 -0.14 -1.44 16 9 C 0.14 2.02 4.63 -4.04 -0.02 2.00 16 10 N -0.74 -13.72 5.72 -60.28 -0.34 -14.06 16 11 C 0.37 8.94 7.66 -155.02 -1.19 7.76 16 12 C -0.16 -3.84 10.50 -16.78 -0.18 -4.01 16 13 N -0.42 -11.23 10.47 -12.11 -0.13 -11.36 16 14 C -0.04 -1.11 9.87 -16.58 -0.16 -1.27 16 15 C 0.27 7.52 6.39 -84.83 -0.54 6.98 16 16 C -0.43 -11.50 9.27 -37.74 -0.35 -11.85 16 17 H 0.09 2.33 7.92 -52.49 -0.42 1.91 16 18 C 0.08 1.92 5.09 -17.34 -0.09 1.83 16 19 N -0.78 -19.76 11.12 55.55 0.62 -19.15 16 20 Si 0.92 18.08 29.60 -169.99 -5.03 13.05 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 23 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 24 N -0.58 -15.84 10.49 -10.14 -0.11 -15.95 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.63 7.65 -51.93 -0.40 0.23 16 27 H 0.03 0.23 7.99 -51.92 -0.41 -0.19 16 28 H 0.04 0.33 7.77 -51.93 -0.40 -0.07 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.77 7.65 -51.93 -0.40 0.38 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.83 7.35 -51.93 -0.38 0.45 16 37 H 0.05 0.75 7.94 -51.93 -0.41 0.34 16 38 H 0.39 6.93 8.60 -40.82 -0.35 6.58 16 39 H 0.12 2.59 6.70 -52.48 -0.35 2.24 16 40 H 0.15 4.19 6.30 -52.49 -0.33 3.86 16 41 H 0.29 6.51 8.29 -40.82 -0.34 6.17 16 LS Contribution 332.37 15.07 5.01 5.01 Total: -1.00 -30.19 332.37 -10.15 -40.34 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.36 Total: 9.57 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.60 Total: -1.04 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -1.17 Total: -66.92 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.19 -10.15 -40.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160971134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.907 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds