Wall clock time and date at job start Mon Mar 30 2020 02:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47205 * 2 1 4 4 H 1.09000 * 109.46856 * 305.74089 * 3 2 1 5 5 C 1.50699 * 109.47063 * 185.73721 * 3 2 1 6 6 H 1.07997 * 120.00083 * 335.22124 * 5 3 2 7 7 C 1.37877 * 119.99587 * 155.21729 * 5 3 2 8 8 N 1.31517 * 120.00434 * 355.34009 * 7 5 3 9 9 Si 1.86798 * 119.99860 * 175.34352 * 7 5 3 10 10 H 1.48505 * 109.47268 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47474 * 119.99663 * 9 7 5 12 12 H 1.48502 * 109.47226 * 240.00058 * 9 7 5 13 13 N 1.46507 * 109.46988 * 65.73683 * 3 2 1 14 14 C 1.38388 * 120.00081 * 274.99871 * 13 3 2 15 15 N 1.32498 * 119.17923 * 359.73121 * 14 13 3 16 16 C 1.32491 * 120.93092 * 179.75571 * 15 14 13 17 17 C 1.38127 * 119.29057 * 0.50862 * 16 15 14 18 18 C 1.39643 * 118.49014 * 359.74836 * 17 16 15 19 19 N 1.38533 * 120.48592 * 180.02562 * 18 17 16 20 20 C 1.48533 * 110.99782 * 62.58091 * 19 18 17 21 21 C 1.54937 * 103.22437 * 159.72153 * 20 19 18 22 22 C 1.54597 * 102.92424 * 322.58577 * 21 20 19 23 23 C 1.47898 * 110.99919 * 179.97438 * 19 18 17 24 24 N 1.32444 * 119.17751 * 180.02562 * 14 13 3 25 25 H 1.09001 * 109.46806 * 299.99929 * 1 2 3 26 26 H 1.08998 * 109.47239 * 59.99571 * 1 2 3 27 27 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46806 * 240.00071 * 2 1 3 29 29 H 1.08999 * 109.46620 * 119.99996 * 2 1 3 30 30 H 0.96996 * 119.99613 * 5.27670 * 8 7 5 31 31 H 0.97002 * 119.99565 * 95.00342 * 13 3 2 32 32 H 1.08004 * 120.35535 * 180.25771 * 16 15 14 33 33 H 1.08001 * 120.75457 * 179.72255 * 17 16 15 34 34 H 1.09002 * 110.66901 * 278.15170 * 20 19 18 35 35 H 1.08991 * 110.66963 * 41.28882 * 20 19 18 36 36 H 1.09006 * 110.72347 * 204.22803 * 21 20 19 37 37 H 1.09005 * 110.88124 * 81.01541 * 21 20 19 38 38 H 1.09003 * 110.30893 * 263.04542 * 22 21 20 39 39 H 1.09002 * 110.31099 * 140.87644 * 22 21 20 40 40 H 1.08997 * 109.92037 * 333.50565 * 23 19 18 41 41 H 1.08998 * 109.91748 * 94.80436 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5952 1.9851 -0.8341 5 6 3.5403 1.4448 -0.1420 6 1 4.1135 0.5839 0.1688 7 6 4.1811 2.5461 -0.6689 8 7 3.4785 3.5568 -1.1320 9 14 6.0474 2.6026 -0.7251 10 1 6.5982 1.3504 -0.1471 11 1 6.4965 2.7359 -2.1343 12 1 6.5314 3.7659 0.0609 13 7 1.6677 2.0921 1.2593 14 6 0.4193 2.6737 1.3952 15 7 -0.4244 2.6383 0.3742 16 6 -1.6299 3.1799 0.4678 17 6 -2.0034 3.7980 1.6453 18 6 -1.0912 3.8243 2.7023 19 7 -1.4229 4.4327 3.9018 20 6 -2.5759 3.7509 4.5436 21 6 -2.4634 4.1845 6.0268 22 6 -0.9366 4.1961 6.2688 23 6 -0.3087 4.3381 4.8699 24 7 0.1000 3.2570 2.5406 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.5135 3.5619 -1.0337 31 1 2.2963 2.1146 1.9977 32 1 -2.3118 3.1420 -0.3689 33 1 -2.9786 4.2511 1.7460 34 1 -3.5156 4.0958 4.1122 35 1 -2.4831 2.6688 4.4511 36 1 -2.9518 3.4601 6.6786 37 1 -2.8848 5.1791 6.1738 38 1 -0.6200 3.2617 6.7324 39 1 -0.6593 5.0435 6.8959 40 1 0.3035 3.4642 4.6473 41 1 0.2992 5.2417 4.8258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161048687.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:50 Heat of formation + Delta-G solvation = 62.699895 kcal Electronic energy + Delta-G solvation = -21904.093510 eV Core-core repulsion = 18819.205453 eV Total energy + Delta-G solvation = -3084.888057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.65623 -38.67152 -36.23271 -33.40265 -32.86765 -31.99271 -30.37687 -29.27955 -28.69999 -26.38575 -23.85794 -23.16960 -22.55225 -21.18729 -20.79000 -19.85522 -17.78056 -17.37429 -16.53997 -15.81733 -15.47315 -14.93818 -14.73653 -14.02793 -13.93404 -13.82598 -13.54859 -13.40090 -13.01258 -12.70275 -12.52414 -12.28099 -12.09109 -11.46936 -11.27221 -11.07761 -10.85430 -10.81509 -10.68643 -10.56269 -10.32596 -10.23948 -10.21042 -9.93135 -9.42293 -8.89645 -8.55305 -8.42578 -8.31708 -7.00132 -6.55732 -4.37487 1.76759 1.93237 3.35642 3.37232 3.52676 3.65120 4.02446 4.38976 4.47541 4.49882 4.68750 4.85671 4.94478 5.23575 5.24588 5.33107 5.45172 5.62130 5.64899 5.66713 5.76552 5.83526 5.87784 6.00959 6.03206 6.05629 6.08052 6.21993 6.24378 6.53846 6.66485 6.72417 6.84710 6.97017 7.05235 7.25162 7.42477 7.74397 7.79395 8.14682 8.28838 8.57677 8.72286 9.25015 9.43801 10.81253 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020585 B = 0.005017 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.878869 B = 5580.118636 C = 6205.849189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.251 3.749 4 H 0.061 0.939 5 C -0.608 4.608 6 H 0.057 0.943 7 C 0.033 3.967 8 N -0.887 5.887 9 Si 1.074 2.926 10 H -0.287 1.287 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.664 5.664 14 C 0.582 3.418 15 N -0.571 5.571 16 C 0.197 3.803 17 C -0.327 4.327 18 C 0.380 3.620 19 N -0.461 5.461 20 C 0.049 3.951 21 C -0.123 4.123 22 C -0.132 4.132 23 C 0.034 3.966 24 N -0.619 5.619 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.156 0.844 33 H 0.129 0.871 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.553 -0.324 10.697 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C 0.151 3.849 4 H 0.079 0.921 5 C -0.647 4.647 6 H 0.075 0.925 7 C -0.177 4.177 8 N -0.520 5.520 9 Si 0.902 3.098 10 H -0.212 1.212 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.295 5.295 14 C 0.225 3.775 15 N -0.296 5.296 16 C 0.029 3.971 17 C -0.357 4.357 18 C 0.137 3.863 19 N -0.180 5.180 20 C -0.077 4.077 21 C -0.161 4.161 22 C -0.171 4.171 23 C -0.093 4.093 24 N -0.349 5.349 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.233 0.767 32 H 0.173 0.827 33 H 0.147 0.853 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.358 0.574 9.757 13.532 hybrid contribution -1.717 -1.017 1.090 2.274 sum -11.075 -0.442 10.848 15.509 Atomic orbital electron populations 1.21821 0.97195 0.98198 1.01961 1.21828 0.94209 0.99259 1.00332 1.19005 0.94871 0.88489 0.82569 0.92108 1.22201 0.91176 1.04186 1.47089 0.92466 1.26023 1.07252 0.92433 0.91966 1.70687 1.09857 1.32310 1.39121 0.83479 0.73737 0.75665 0.76930 1.21243 1.21044 1.21221 1.46771 1.08765 1.55350 1.18628 1.19735 0.88298 0.86012 0.83466 1.68241 1.04449 1.26268 1.30679 1.22645 0.91551 0.87643 0.95291 1.21653 1.03001 1.14686 0.96339 1.19744 0.88824 0.86033 0.91678 1.61807 1.07119 1.46863 1.02210 1.23232 0.93514 0.97028 0.93954 1.22512 0.96479 1.02175 0.94980 1.22455 0.95202 1.02291 0.97119 1.22867 0.93269 1.04057 0.89074 1.67775 1.21041 1.19772 1.26335 0.93907 0.92327 0.95599 0.92249 0.93963 0.90960 0.76709 0.82676 0.85270 0.89267 0.92868 0.90705 0.90478 0.91342 0.90900 0.89755 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.45 37.16 0.31 -2.31 16 2 C -0.12 -2.53 5.58 -26.73 -0.15 -2.68 16 3 C 0.25 6.14 1.95 -69.08 -0.13 6.01 16 4 H 0.06 1.67 6.04 -51.93 -0.31 1.35 16 5 C -0.61 -16.16 8.50 -34.44 -0.29 -16.45 16 6 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 7 C 0.03 0.90 5.45 -17.82 -0.10 0.80 16 8 N -0.89 -26.18 13.62 55.43 0.76 -25.42 16 9 Si 1.07 24.27 29.91 -169.99 -5.08 19.19 16 10 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.66 -15.39 5.16 -56.94 -0.29 -15.68 16 14 C 0.58 12.83 7.02 -322.89 -2.27 10.56 16 15 N -0.57 -11.92 6.38 -14.02 -0.09 -12.01 16 16 C 0.20 3.38 11.28 -17.31 -0.20 3.19 16 17 C -0.33 -5.29 9.57 -39.10 -0.37 -5.66 16 18 C 0.38 6.76 6.21 -154.83 -0.96 5.80 16 19 N -0.46 -6.87 5.30 -169.09 -0.90 -7.76 16 20 C 0.05 0.56 6.08 -1.90 -0.01 0.55 16 21 C -0.12 -1.13 7.06 -24.87 -0.18 -1.30 16 22 C -0.13 -1.36 6.93 -25.37 -0.18 -1.54 16 23 C 0.03 0.48 6.36 -2.76 -0.02 0.47 16 24 N -0.62 -12.64 8.32 -13.17 -0.11 -12.75 16 25 H 0.04 0.87 5.58 -51.93 -0.29 0.58 16 26 H 0.06 1.16 7.70 -51.93 -0.40 0.76 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.28 8.43 6.66 -40.82 -0.27 8.16 16 31 H 0.40 9.14 8.71 -40.82 -0.36 8.78 16 32 H 0.16 2.08 8.06 -52.48 -0.42 1.66 16 33 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.65 7.99 -51.93 -0.42 0.24 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.38 6.53 -51.93 -0.34 1.04 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 326.88 15.07 4.93 4.93 Total: -1.00 -29.87 326.88 -11.57 -41.44 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.24 Total: 10.65 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -4.54 Total: -2.57 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -0.63 Total: -73.64 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.08 Total: 19.19 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.87 -11.57 -41.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161048687.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.139 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds