Wall clock time and date at job start Mon Mar 30 2020 02:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47205 * 2 1 4 4 H 1.09000 * 109.46856 * 305.74089 * 3 2 1 5 5 C 1.50699 * 109.47063 * 185.73721 * 3 2 1 6 6 H 1.07997 * 120.00083 * 335.22124 * 5 3 2 7 7 C 1.37877 * 119.99587 * 155.21729 * 5 3 2 8 8 N 1.31517 * 120.00434 * 355.34009 * 7 5 3 9 9 Si 1.86798 * 119.99860 * 175.34352 * 7 5 3 10 10 H 1.48505 * 109.47268 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47474 * 119.99663 * 9 7 5 12 12 H 1.48502 * 109.47226 * 240.00058 * 9 7 5 13 13 N 1.46507 * 109.46988 * 65.73683 * 3 2 1 14 14 C 1.38388 * 120.00081 * 274.99871 * 13 3 2 15 15 N 1.32498 * 119.17923 * 359.73121 * 14 13 3 16 16 C 1.32491 * 120.93092 * 179.75571 * 15 14 13 17 17 C 1.38127 * 119.29057 * 0.50862 * 16 15 14 18 18 C 1.39643 * 118.49014 * 359.74836 * 17 16 15 19 19 N 1.38533 * 120.48592 * 180.02562 * 18 17 16 20 20 C 1.48533 * 110.99782 * 62.58091 * 19 18 17 21 21 C 1.54937 * 103.22437 * 159.72153 * 20 19 18 22 22 C 1.54597 * 102.92424 * 322.58577 * 21 20 19 23 23 C 1.47898 * 110.99919 * 179.97438 * 19 18 17 24 24 N 1.32444 * 119.17751 * 180.02562 * 14 13 3 25 25 H 1.09001 * 109.46806 * 299.99929 * 1 2 3 26 26 H 1.08998 * 109.47239 * 59.99571 * 1 2 3 27 27 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46806 * 240.00071 * 2 1 3 29 29 H 1.08999 * 109.46620 * 119.99996 * 2 1 3 30 30 H 0.96996 * 119.99613 * 5.27670 * 8 7 5 31 31 H 0.97002 * 119.99565 * 95.00342 * 13 3 2 32 32 H 1.08004 * 120.35535 * 180.25771 * 16 15 14 33 33 H 1.08001 * 120.75457 * 179.72255 * 17 16 15 34 34 H 1.09002 * 110.66901 * 278.15170 * 20 19 18 35 35 H 1.08991 * 110.66963 * 41.28882 * 20 19 18 36 36 H 1.09006 * 110.72347 * 204.22803 * 21 20 19 37 37 H 1.09005 * 110.88124 * 81.01541 * 21 20 19 38 38 H 1.09003 * 110.30893 * 263.04542 * 22 21 20 39 39 H 1.09002 * 110.31099 * 140.87644 * 22 21 20 40 40 H 1.08997 * 109.92037 * 333.50565 * 23 19 18 41 41 H 1.08998 * 109.91748 * 94.80436 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5952 1.9851 -0.8341 5 6 3.5403 1.4448 -0.1420 6 1 4.1135 0.5839 0.1688 7 6 4.1811 2.5461 -0.6689 8 7 3.4785 3.5568 -1.1320 9 14 6.0474 2.6026 -0.7251 10 1 6.5982 1.3504 -0.1471 11 1 6.4965 2.7359 -2.1343 12 1 6.5314 3.7659 0.0609 13 7 1.6677 2.0921 1.2593 14 6 0.4193 2.6737 1.3952 15 7 -0.4244 2.6383 0.3742 16 6 -1.6299 3.1799 0.4678 17 6 -2.0034 3.7980 1.6453 18 6 -1.0912 3.8243 2.7023 19 7 -1.4229 4.4327 3.9018 20 6 -2.5759 3.7509 4.5436 21 6 -2.4634 4.1845 6.0268 22 6 -0.9366 4.1961 6.2688 23 6 -0.3087 4.3381 4.8699 24 7 0.1000 3.2570 2.5406 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.5135 3.5619 -1.0337 31 1 2.2963 2.1146 1.9977 32 1 -2.3118 3.1420 -0.3689 33 1 -2.9786 4.2511 1.7460 34 1 -3.5156 4.0958 4.1122 35 1 -2.4831 2.6688 4.4511 36 1 -2.9518 3.4601 6.6786 37 1 -2.8848 5.1791 6.1738 38 1 -0.6200 3.2617 6.7324 39 1 -0.6593 5.0435 6.8959 40 1 0.3035 3.4642 4.6473 41 1 0.2992 5.2417 4.8258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161048687.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:49 Heat of formation + Delta-G solvation = 45.992068 kcal Electronic energy + Delta-G solvation = -21904.818016 eV Core-core repulsion = 18819.205453 eV Total energy + Delta-G solvation = -3085.612563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.05232 -39.88921 -37.94936 -34.76940 -34.61409 -33.69372 -31.82438 -30.50933 -29.84717 -28.24404 -25.23874 -24.99243 -23.97170 -22.50178 -21.76110 -21.50053 -19.48424 -18.85978 -18.11795 -17.01977 -16.80845 -16.44369 -16.10688 -15.70866 -15.60690 -15.22146 -15.03075 -14.70391 -14.53381 -14.15002 -14.01305 -13.53479 -13.15342 -12.87083 -12.63619 -12.56823 -12.31245 -12.29877 -12.16529 -11.93821 -11.83878 -11.69963 -11.53557 -11.41570 -11.12868 -10.84721 -10.52768 -9.92584 -9.70907 -8.73765 -8.61489 -6.53774 0.37041 0.47573 1.52207 1.58097 1.76865 2.18336 2.51335 2.65755 3.09864 3.22238 3.43990 3.62677 3.80103 4.00857 4.13468 4.23826 4.28894 4.31448 4.36635 4.47727 4.52682 4.61517 4.67610 4.76586 4.86070 4.92251 4.95611 4.99326 5.10665 5.10889 5.21116 5.21727 5.24646 5.42259 5.51256 5.55952 5.78418 6.04313 6.10832 6.26508 6.46568 6.50441 6.93192 7.35938 7.65181 8.63843 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020585 B = 0.005017 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.878869 B = 5580.118636 C = 6205.849189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.113 4.113 3 C 0.260 3.740 4 H 0.027 0.973 5 C -0.616 4.616 6 H 0.056 0.944 7 C -0.014 4.014 8 N -0.919 5.919 9 Si 1.121 2.879 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.285 1.285 13 N -0.677 5.677 14 C 0.567 3.433 15 N -0.597 5.597 16 C 0.187 3.813 17 C -0.310 4.310 18 C 0.365 3.635 19 N -0.464 5.464 20 C 0.045 3.955 21 C -0.113 4.113 22 C -0.126 4.126 23 C 0.030 3.970 24 N -0.636 5.636 25 H 0.031 0.969 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.260 0.740 31 H 0.393 0.607 32 H 0.193 0.807 33 H 0.166 0.834 34 H 0.110 0.890 35 H 0.043 0.957 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.345 -0.374 12.112 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 C 0.159 3.841 4 H 0.045 0.955 5 C -0.654 4.654 6 H 0.074 0.926 7 C -0.216 4.216 8 N -0.554 5.554 9 Si 0.943 3.057 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.211 1.211 13 N -0.310 5.310 14 C 0.209 3.791 15 N -0.323 5.323 16 C 0.020 3.980 17 C -0.339 4.339 18 C 0.123 3.877 19 N -0.182 5.182 20 C -0.080 4.080 21 C -0.151 4.151 22 C -0.164 4.164 23 C -0.097 4.097 24 N -0.367 5.367 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.228 0.772 32 H 0.210 0.790 33 H 0.184 0.816 34 H 0.128 0.872 35 H 0.062 0.938 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.233 0.533 11.200 15.872 hybrid contribution -1.338 -0.951 0.742 1.801 sum -12.571 -0.418 11.943 17.344 Atomic orbital electron populations 1.21634 0.95363 0.99490 1.01049 1.21749 0.95817 0.97345 1.00265 1.18711 0.93668 0.89616 0.82093 0.95468 1.22497 0.92534 1.03929 1.46471 0.92550 1.27383 1.11022 0.91986 0.91242 1.70826 1.08828 1.33782 1.41954 0.82892 0.69053 0.76482 0.77313 1.19084 1.20387 1.21073 1.46115 1.09845 1.57157 1.17871 1.19700 0.88143 0.86749 0.84463 1.68234 1.05809 1.27552 1.30666 1.23342 0.90805 0.86878 0.96941 1.22051 1.03886 1.12857 0.95105 1.20276 0.88295 0.85688 0.93443 1.61908 1.08272 1.46406 1.01664 1.23439 0.92791 0.96338 0.95474 1.22540 0.95446 1.03610 0.93504 1.22439 0.96024 1.03323 0.94631 1.22865 0.93252 1.02131 0.91432 1.67763 1.22720 1.20335 1.25860 0.94992 0.92994 0.93020 0.92342 0.93767 0.92900 0.77206 0.78977 0.81647 0.87171 0.93835 0.88297 0.89162 0.90793 0.89316 0.92548 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.57 8.45 71.98 0.61 -3.96 16 2 C -0.11 -4.93 5.58 30.60 0.17 -4.76 16 3 C 0.26 13.24 1.95 44.24 0.09 13.33 16 4 H 0.03 1.57 6.04 -2.39 -0.01 1.56 16 5 C -0.62 -33.62 8.50 25.60 0.22 -33.40 16 6 H 0.06 3.02 7.81 -2.91 -0.02 2.99 16 7 C -0.01 -0.78 5.45 84.65 0.46 -0.32 16 8 N -0.92 -56.25 13.62 21.45 0.29 -55.96 16 9 Si 1.12 49.41 29.91 68.60 2.05 51.46 16 10 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 N -0.68 -32.78 5.16 -334.05 -1.72 -34.50 16 14 C 0.57 25.72 7.02 261.52 1.83 27.56 16 15 N -0.60 -25.21 6.38 -198.26 -1.27 -26.48 16 16 C 0.19 6.15 11.28 84.57 0.95 7.10 16 17 C -0.31 -9.39 9.57 22.58 0.22 -9.17 16 18 C 0.36 12.72 6.21 133.19 0.83 13.55 16 19 N -0.46 -13.14 5.30 -688.86 -3.65 -16.79 16 20 C 0.04 0.89 6.08 86.65 0.53 1.42 16 21 C -0.11 -1.66 7.06 31.80 0.22 -1.44 16 22 C -0.13 -2.32 6.93 31.47 0.22 -2.10 16 23 C 0.03 0.85 6.36 86.45 0.55 1.40 16 24 N -0.64 -26.56 8.32 -195.57 -1.63 -28.19 16 25 H 0.03 1.29 5.58 -2.39 -0.01 1.28 16 26 H 0.05 2.05 7.70 -2.39 -0.02 2.04 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.26 16.59 6.66 -92.71 -0.62 15.98 16 31 H 0.39 19.08 8.71 -92.71 -0.81 18.28 16 32 H 0.19 4.67 8.06 -2.91 -0.02 4.65 16 33 H 0.17 3.74 8.06 -2.91 -0.02 3.71 16 34 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.04 0.97 7.99 -2.39 -0.02 0.95 16 36 H 0.10 1.04 8.14 -2.38 -0.02 1.03 16 37 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.06 1.90 6.53 -2.39 -0.02 1.88 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -67.70 326.88 1.34 -66.36 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: 0.37 Total: 34.90 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 6.90 Total: 9.20 kcal Atomic # 7 Polarization: -153.94 SS G_CDS: -7.97 Total: -161.92 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 2.05 Total: 51.46 kcal Total: -67.70 1.34 -66.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161048687.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.351 kcal (2) G-P(sol) polarization free energy of solvation -67.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds