Wall clock time and date at job start Mon Mar 30 2020 02:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47312 * 2 1 4 4 H 1.09000 * 109.46983 * 304.68211 * 3 2 1 5 5 C 1.50699 * 109.47070 * 184.68525 * 3 2 1 6 6 H 1.07998 * 119.99704 * 245.45190 * 5 3 2 7 7 C 1.37879 * 120.00210 * 65.45410 * 5 3 2 8 8 N 1.31516 * 119.99815 * 9.45742 * 7 5 3 9 9 Si 1.86803 * 119.99935 * 189.46379 * 7 5 3 10 10 H 1.48494 * 109.47205 * 84.99032 * 9 7 5 11 11 H 1.48504 * 109.46852 * 204.99162 * 9 7 5 12 12 H 1.48501 * 109.46892 * 324.98886 * 9 7 5 13 13 N 1.46497 * 109.46924 * 64.68402 * 3 2 1 14 14 C 1.38401 * 120.00118 * 274.99912 * 13 3 2 15 15 N 1.32509 * 119.21709 * 359.97438 * 14 13 3 16 16 C 1.32268 * 120.73896 * 179.74947 * 15 14 13 17 17 C 1.38622 * 119.19441 * 0.52387 * 16 15 14 18 18 C 1.50703 * 120.71760 * 179.76691 * 17 16 15 19 19 C 1.38576 * 118.56112 * 359.48465 * 17 16 15 20 20 C 1.50700 * 120.40508 * 180.28129 * 19 17 16 21 21 C 1.53938 * 113.73493 * 216.72711 * 20 19 17 22 22 N 1.47958 * 86.18026 * 221.91385 * 21 20 19 23 23 C 1.47956 * 90.76282 * 24.69068 * 22 21 20 24 24 N 1.32295 * 119.19905 * 0.25677 * 19 17 16 25 25 H 1.09005 * 109.46934 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46780 * 299.99426 * 1 2 3 27 27 H 1.09000 * 109.47219 * 59.99653 * 1 2 3 28 28 H 1.09005 * 109.46642 * 240.00080 * 2 1 3 29 29 H 1.09000 * 109.47219 * 120.00347 * 2 1 3 30 30 H 0.96993 * 119.99487 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99747 * 94.99870 * 13 3 2 32 32 H 1.08002 * 120.40082 * 180.27814 * 16 15 14 33 33 H 1.09009 * 109.46856 * 269.71252 * 18 17 16 34 34 H 1.09000 * 109.47097 * 149.71503 * 18 17 16 35 35 H 1.08998 * 109.47297 * 29.71260 * 18 17 16 36 36 H 1.09003 * 112.93464 * 348.42926 * 20 19 17 37 37 H 1.08997 * 113.75938 * 336.23913 * 21 20 19 38 38 H 1.09009 * 113.75651 * 107.59902 * 21 20 19 39 39 H 1.00896 * 111.00547 * 271.79220 * 22 21 20 40 40 H 1.08996 * 113.75880 * 220.98998 * 23 22 21 41 41 H 1.09004 * 113.86131 * 89.64064 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6098 1.9800 -0.8451 5 6 3.5425 1.4440 -0.1161 6 1 4.1468 1.8098 0.7009 7 6 4.1457 0.9784 -1.2652 8 7 3.4179 0.7083 -2.3268 9 14 5.9967 0.7312 -1.3140 10 1 6.3319 -0.6075 -0.7656 11 1 6.4715 0.8240 -2.7180 12 1 6.6579 1.7805 -0.4974 13 7 1.6460 2.0997 1.2486 14 6 0.3954 2.6821 1.3593 15 7 -0.4331 2.6366 0.3261 16 6 -1.6371 3.1791 0.4005 17 6 -2.0234 3.8094 1.5732 18 6 -3.3852 4.4435 1.6937 19 6 -1.1324 3.8387 2.6341 20 6 -1.5117 4.5073 3.9303 21 6 -0.3447 5.2444 4.6119 22 7 -0.8555 4.6758 5.8788 23 6 -1.4933 3.5610 5.1443 24 7 0.0550 3.2722 2.4955 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8424 0.3812 -3.1352 31 1 2.2616 2.1267 1.9977 32 1 -2.3096 3.1349 -0.4434 33 1 -3.3304 5.4850 1.3765 34 1 -3.7173 4.3966 2.7308 35 1 -4.0928 3.9077 1.0610 36 1 -2.4219 5.1018 3.8512 37 1 0.6381 4.8692 4.3268 38 1 -0.4191 6.3305 4.5565 39 1 -1.5495 5.2802 6.2926 40 1 -2.4853 3.3019 5.5142 41 1 -0.8478 2.6923 5.0142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:47 Heat of formation + Delta-G solvation = 88.157314 kcal Electronic energy + Delta-G solvation = -21721.158514 eV Core-core repulsion = 18637.374373 eV Total energy + Delta-G solvation = -3083.784140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.86007 -39.14514 -36.34329 -33.58747 -33.17927 -31.96945 -30.70240 -27.91253 -27.19170 -26.03930 -25.55132 -23.50583 -22.96505 -21.57609 -20.42399 -19.43553 -18.00751 -16.71533 -16.52320 -16.11475 -15.08448 -14.78746 -14.63401 -14.01070 -13.87004 -13.69196 -13.46754 -13.24095 -12.89087 -12.67301 -12.54739 -12.37319 -12.08115 -11.57060 -11.40038 -11.22728 -11.18993 -11.00849 -10.83866 -10.53769 -10.37276 -10.15469 -9.86471 -9.72162 -9.37870 -9.01913 -8.79920 -8.46213 -8.25406 -7.06520 -6.15973 -4.20600 1.62280 1.73987 3.25656 3.32185 3.34048 3.74432 3.92937 4.22603 4.35850 4.50374 4.65351 4.77045 5.02210 5.16957 5.17689 5.24309 5.32882 5.39891 5.50704 5.65033 5.68495 5.82033 5.88273 5.90141 5.98604 6.19734 6.30486 6.32218 6.35439 6.53425 6.80355 6.96211 7.13365 7.19810 7.29789 7.40839 7.62727 7.68149 7.73723 7.97926 8.09754 8.56981 8.78019 9.13407 9.44834 10.92090 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023305 B = 0.004650 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.188294 B = 6019.809205 C = 6694.822842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.120 4.120 3 C 0.280 3.720 4 H 0.062 0.938 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.071 3.929 8 N -0.880 5.880 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.669 5.669 14 C 0.570 3.430 15 N -0.548 5.548 16 C 0.191 3.809 17 C -0.286 4.286 18 C -0.085 4.085 19 C 0.224 3.776 20 C -0.116 4.116 21 C 0.037 3.963 22 N -0.660 5.660 23 C 0.039 3.961 24 N -0.578 5.578 25 H 0.021 0.979 26 H 0.032 0.968 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.033 0.967 30 H 0.265 0.735 31 H 0.402 0.598 32 H 0.156 0.844 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.332 0.668 40 H 0.071 0.929 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.892 6.745 9.438 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.080 0.920 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.133 4.133 8 N -0.516 5.516 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.298 5.298 14 C 0.213 3.787 15 N -0.270 5.270 16 C 0.021 3.979 17 C -0.296 4.296 18 C -0.143 4.143 19 C 0.074 3.926 20 C -0.137 4.137 21 C -0.093 4.093 22 N -0.286 5.286 23 C -0.092 4.092 24 N -0.302 5.302 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.238 0.762 32 H 0.173 0.827 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.146 0.854 40 H 0.090 0.910 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.101 5.777 9.372 15.634 hybrid contribution -0.483 0.540 -0.443 0.849 sum -11.583 6.317 8.929 15.931 Atomic orbital electron populations 1.21815 0.98218 0.97850 1.01058 1.21868 0.92928 0.99973 1.01141 1.18864 0.94151 0.88680 0.80561 0.92010 1.21181 0.90554 1.43959 1.01933 0.92100 1.24845 0.98480 0.95074 0.94886 1.69978 1.35755 1.43795 1.02121 0.86526 0.84974 0.78781 0.77235 1.20392 1.21154 1.19897 1.45202 1.09959 1.55793 1.18893 1.19515 0.88081 0.86912 0.84184 1.68262 1.04554 1.23846 1.30332 1.22767 0.91576 0.88133 0.95444 1.20852 1.00056 1.11201 0.97505 1.20398 0.92639 0.99681 1.01624 1.20662 0.87985 0.90431 0.93571 1.23387 1.00280 0.98216 0.91790 1.23662 0.99219 0.98314 0.88078 1.65080 1.31755 1.08641 1.23129 1.23592 0.99410 0.95996 0.90156 1.67579 1.19576 1.17473 1.25559 0.95976 0.94867 0.92423 0.90100 0.94855 0.92568 0.76230 0.82728 0.92288 0.92342 0.92021 0.87519 0.86907 0.91213 0.85424 0.91041 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.43 37.16 0.31 -2.48 16 2 C -0.12 -2.84 5.50 -26.73 -0.15 -2.99 16 3 C 0.28 6.94 2.11 -69.08 -0.15 6.80 16 4 H 0.06 1.74 7.45 -51.93 -0.39 1.35 16 5 C -0.54 -14.30 8.66 -34.44 -0.30 -14.60 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.91 5.16 -17.82 -0.09 1.81 16 8 N -0.88 -24.52 12.16 55.43 0.67 -23.85 16 9 Si 0.90 20.74 29.55 -169.99 -5.02 15.71 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.67 -14.66 5.15 -56.93 -0.29 -14.95 16 14 C 0.57 11.66 6.98 -322.81 -2.25 9.41 16 15 N -0.55 -10.92 6.37 -13.93 -0.09 -11.01 16 16 C 0.19 3.06 11.00 -17.22 -0.19 2.87 16 17 C -0.29 -4.02 5.91 -104.35 -0.62 -4.64 16 18 C -0.09 -0.83 9.40 36.01 0.34 -0.50 16 19 C 0.22 3.37 6.03 -82.27 -0.50 2.87 16 20 C -0.12 -1.32 3.77 -90.84 -0.34 -1.66 16 21 C 0.04 0.43 8.39 -2.77 -0.02 0.41 16 22 N -0.66 -7.22 8.55 -117.08 -1.00 -8.22 16 23 C 0.04 0.43 8.44 -2.77 -0.02 0.41 16 24 N -0.58 -10.48 9.52 -10.16 -0.10 -10.57 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.03 0.70 5.61 -51.93 -0.29 0.41 16 27 H 0.06 1.25 7.63 -51.93 -0.40 0.86 16 28 H 0.08 2.10 6.81 -51.93 -0.35 1.74 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.40 8.40 8.64 -40.82 -0.35 8.05 16 32 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.06 0.50 6.46 -51.93 -0.34 0.16 16 35 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.11 0.97 6.21 -51.93 -0.32 0.64 16 37 H 0.11 1.61 7.47 -51.93 -0.39 1.23 16 38 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.33 2.77 8.89 -39.29 -0.35 2.42 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 1.41 8.07 -51.93 -0.42 0.99 16 LS Contribution 328.55 15.07 4.95 4.95 Total: -1.00 -28.99 328.55 -10.94 -39.94 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.09 Total: 10.29 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -3.97 Total: -2.29 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -0.81 Total: -68.60 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.99 -10.94 -39.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.093 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds