Wall clock time and date at job start Mon Mar 30 2020 02:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47312 * 2 1 4 4 H 1.09000 * 109.46983 * 304.68211 * 3 2 1 5 5 C 1.50699 * 109.47070 * 184.68525 * 3 2 1 6 6 H 1.07998 * 119.99704 * 245.45190 * 5 3 2 7 7 C 1.37879 * 120.00210 * 65.45410 * 5 3 2 8 8 N 1.31516 * 119.99815 * 9.45742 * 7 5 3 9 9 Si 1.86803 * 119.99935 * 189.46379 * 7 5 3 10 10 H 1.48494 * 109.47205 * 84.99032 * 9 7 5 11 11 H 1.48504 * 109.46852 * 204.99162 * 9 7 5 12 12 H 1.48501 * 109.46892 * 324.98886 * 9 7 5 13 13 N 1.46497 * 109.46924 * 64.68402 * 3 2 1 14 14 C 1.38401 * 120.00118 * 274.99912 * 13 3 2 15 15 N 1.32509 * 119.21709 * 359.97438 * 14 13 3 16 16 C 1.32268 * 120.73896 * 179.74947 * 15 14 13 17 17 C 1.38622 * 119.19441 * 0.52387 * 16 15 14 18 18 C 1.50703 * 120.71760 * 179.76691 * 17 16 15 19 19 C 1.38576 * 118.56112 * 359.48465 * 17 16 15 20 20 C 1.50700 * 120.40508 * 180.28129 * 19 17 16 21 21 C 1.53938 * 113.73493 * 216.72711 * 20 19 17 22 22 N 1.47958 * 86.18026 * 221.91385 * 21 20 19 23 23 C 1.47956 * 90.76282 * 24.69068 * 22 21 20 24 24 N 1.32295 * 119.19905 * 0.25677 * 19 17 16 25 25 H 1.09005 * 109.46934 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46780 * 299.99426 * 1 2 3 27 27 H 1.09000 * 109.47219 * 59.99653 * 1 2 3 28 28 H 1.09005 * 109.46642 * 240.00080 * 2 1 3 29 29 H 1.09000 * 109.47219 * 120.00347 * 2 1 3 30 30 H 0.96993 * 119.99487 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99747 * 94.99870 * 13 3 2 32 32 H 1.08002 * 120.40082 * 180.27814 * 16 15 14 33 33 H 1.09009 * 109.46856 * 269.71252 * 18 17 16 34 34 H 1.09000 * 109.47097 * 149.71503 * 18 17 16 35 35 H 1.08998 * 109.47297 * 29.71260 * 18 17 16 36 36 H 1.09003 * 112.93464 * 348.42926 * 20 19 17 37 37 H 1.08997 * 113.75938 * 336.23913 * 21 20 19 38 38 H 1.09009 * 113.75651 * 107.59902 * 21 20 19 39 39 H 1.00896 * 111.00547 * 271.79220 * 22 21 20 40 40 H 1.08996 * 113.75880 * 220.98998 * 23 22 21 41 41 H 1.09004 * 113.86131 * 89.64064 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6098 1.9800 -0.8451 5 6 3.5425 1.4440 -0.1161 6 1 4.1468 1.8098 0.7009 7 6 4.1457 0.9784 -1.2652 8 7 3.4179 0.7083 -2.3268 9 14 5.9967 0.7312 -1.3140 10 1 6.3319 -0.6075 -0.7656 11 1 6.4715 0.8240 -2.7180 12 1 6.6579 1.7805 -0.4974 13 7 1.6460 2.0997 1.2486 14 6 0.3954 2.6821 1.3593 15 7 -0.4331 2.6366 0.3261 16 6 -1.6371 3.1791 0.4005 17 6 -2.0234 3.8094 1.5732 18 6 -3.3852 4.4435 1.6937 19 6 -1.1324 3.8387 2.6341 20 6 -1.5117 4.5073 3.9303 21 6 -0.3447 5.2444 4.6119 22 7 -0.8555 4.6758 5.8788 23 6 -1.4933 3.5610 5.1443 24 7 0.0550 3.2722 2.4955 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8424 0.3812 -3.1352 31 1 2.2616 2.1267 1.9977 32 1 -2.3096 3.1349 -0.4434 33 1 -3.3304 5.4850 1.3765 34 1 -3.7173 4.3966 2.7308 35 1 -4.0928 3.9077 1.0610 36 1 -2.4219 5.1018 3.8512 37 1 0.6381 4.8692 4.3268 38 1 -0.4191 6.3305 4.5565 39 1 -1.5495 5.2802 6.2926 40 1 -2.4853 3.3019 5.5142 41 1 -0.8478 2.6923 5.0142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161055439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:46 Heat of formation + Delta-G solvation = 69.279968 kcal Electronic energy + Delta-G solvation = -21721.977097 eV Core-core repulsion = 18637.374373 eV Total energy + Delta-G solvation = -3084.602724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.10516 -40.18238 -38.00456 -35.13261 -34.51440 -33.69425 -32.32764 -29.23618 -28.64846 -26.94793 -26.86542 -24.98321 -24.52163 -22.97114 -21.76945 -20.87551 -19.56083 -18.09509 -17.90535 -17.39506 -16.75348 -16.39741 -15.91077 -15.54216 -15.14367 -14.86964 -14.68794 -14.55351 -14.29467 -13.78596 -13.71551 -13.48913 -13.39088 -13.29716 -12.89079 -12.84827 -12.65188 -12.32788 -12.20506 -12.16572 -12.05824 -11.68327 -11.50646 -11.25117 -11.09604 -10.71112 -10.43808 -9.92552 -9.35951 -8.57216 -8.20276 -6.32286 0.37274 0.43282 1.41744 1.42999 1.52102 2.22870 2.46450 2.98666 3.04954 3.10841 3.37469 3.61243 3.71077 3.97304 4.06408 4.25959 4.33493 4.42374 4.49854 4.53437 4.68746 4.71557 4.76895 4.80408 4.86781 4.95991 4.99694 5.07242 5.17611 5.22758 5.25281 5.27574 5.44266 5.50132 5.60460 5.75823 5.79557 6.04041 6.18740 6.41548 6.50799 6.78107 6.94239 7.34703 7.67488 8.87400 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023305 B = 0.004650 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.188294 B = 6019.809205 C = 6694.822842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.112 4.112 3 C 0.296 3.704 4 H 0.022 0.978 5 C -0.556 4.556 6 H 0.059 0.941 7 C 0.025 3.975 8 N -0.909 5.909 9 Si 0.962 3.038 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.270 1.270 13 N -0.684 5.684 14 C 0.549 3.451 15 N -0.581 5.581 16 C 0.170 3.830 17 C -0.265 4.265 18 C -0.084 4.084 19 C 0.207 3.793 20 C -0.106 4.106 21 C 0.035 3.965 22 N -0.667 5.667 23 C 0.041 3.959 24 N -0.587 5.587 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.032 0.968 30 H 0.266 0.734 31 H 0.402 0.598 32 H 0.183 0.817 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.143 0.857 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.351 0.649 40 H 0.101 0.899 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.002 7.961 10.816 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.152 4.152 3 C 0.192 3.808 4 H 0.040 0.960 5 C -0.594 4.594 6 H 0.077 0.923 7 C -0.176 4.176 8 N -0.547 5.547 9 Si 0.787 3.213 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.195 1.195 13 N -0.317 5.317 14 C 0.192 3.808 15 N -0.304 5.304 16 C 0.003 3.997 17 C -0.273 4.273 18 C -0.142 4.142 19 C 0.058 3.942 20 C -0.126 4.126 21 C -0.096 4.096 22 N -0.296 5.296 23 C -0.090 4.090 24 N -0.310 5.310 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.237 0.763 32 H 0.200 0.800 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.161 0.839 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.167 0.833 40 H 0.119 0.881 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.292 7.037 10.781 18.505 hybrid contribution 0.011 0.283 -0.800 0.848 sum -13.282 7.320 9.981 18.155 Atomic orbital electron populations 1.21602 0.96172 0.98771 1.00494 1.21710 0.94685 0.99128 0.99630 1.18359 0.92996 0.88744 0.80657 0.96040 1.21517 0.91818 1.43999 1.02055 0.92273 1.25632 1.02819 0.94689 0.94458 1.70095 1.37519 1.44496 1.02597 0.85514 0.79670 0.78842 0.77255 1.19683 1.20770 1.19494 1.44808 1.11235 1.57728 1.17888 1.19540 0.87846 0.88100 0.85288 1.68202 1.06127 1.25301 1.30800 1.23374 0.90797 0.88193 0.97371 1.21388 1.01602 1.08488 0.95853 1.20534 0.89834 1.00255 1.03581 1.21436 0.87146 0.90063 0.95605 1.23583 1.01348 0.98148 0.89517 1.23537 0.97804 0.99540 0.88673 1.64967 1.32736 1.08974 1.22886 1.23495 1.00159 0.95036 0.90270 1.67599 1.21336 1.17447 1.24654 0.94106 0.94883 0.93434 0.92718 0.94928 0.92498 0.76278 0.80038 0.90623 0.90169 0.90408 0.83929 0.90360 0.88983 0.83275 0.88093 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.89 8.43 71.98 0.61 -4.28 16 2 C -0.11 -5.53 5.50 30.59 0.17 -5.37 16 3 C 0.30 15.45 2.11 44.25 0.09 15.54 16 4 H 0.02 1.29 7.45 -2.39 -0.02 1.28 16 5 C -0.56 -30.68 8.66 25.60 0.22 -30.46 16 6 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 7 C 0.03 1.38 5.16 84.65 0.44 1.81 16 8 N -0.91 -52.34 12.16 21.45 0.26 -52.08 16 9 Si 0.96 43.29 29.55 68.60 2.03 45.32 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 13 N -0.68 -31.57 5.15 -334.02 -1.72 -33.29 16 14 C 0.55 23.20 6.98 261.49 1.82 25.03 16 15 N -0.58 -23.67 6.37 -197.98 -1.26 -24.93 16 16 C 0.17 5.27 11.00 84.72 0.93 6.20 16 17 C -0.26 -6.76 5.91 -19.69 -0.12 -6.88 16 18 C -0.08 -1.25 9.40 71.24 0.67 -0.58 16 19 C 0.21 5.89 6.03 42.57 0.26 6.14 16 20 C -0.11 -2.09 3.77 -10.89 -0.04 -2.13 16 21 C 0.03 0.75 8.39 86.41 0.73 1.47 16 22 N -0.67 -13.01 8.55 -524.33 -4.49 -17.50 16 23 C 0.04 0.82 8.44 86.41 0.73 1.55 16 24 N -0.59 -21.56 9.52 -186.05 -1.77 -23.33 16 25 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.03 1.41 5.61 -2.39 -0.01 1.40 16 27 H 0.05 2.12 7.63 -2.39 -0.02 2.10 16 28 H 0.05 2.96 6.81 -2.38 -0.02 2.94 16 29 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.40 17.83 8.64 -92.71 -0.80 17.03 16 32 H 0.18 4.36 8.06 -2.91 -0.02 4.34 16 33 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.08 0.89 6.46 -2.39 -0.02 0.88 16 35 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 36 H 0.14 1.81 6.21 -2.39 -0.01 1.79 16 37 H 0.08 2.26 7.47 -2.39 -0.02 2.24 16 38 H 0.09 1.54 8.14 -2.38 -0.02 1.53 16 39 H 0.35 4.61 8.89 -89.70 -0.80 3.81 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.92 8.07 -2.39 -0.02 1.90 16 Total: -1.00 -66.34 328.55 -0.99 -67.33 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -0.54 Total: 30.42 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 6.51 Total: 8.06 kcal Atomic # 7 Polarization: -142.16 SS G_CDS: -8.98 Total: -151.14 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -66.34 -0.99 -67.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.611 kcal (2) G-P(sol) polarization free energy of solvation -66.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds