Wall clock time and date at job start Mon Mar 30 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46842 * 110.99758 * 2 1 4 4 C 1.53039 * 109.52154 * 185.83574 * 3 2 1 5 5 C 1.53122 * 109.28064 * 300.81925 * 4 3 2 6 6 C 1.53121 * 109.16031 * 57.65031 * 5 4 3 7 7 C 1.52992 * 109.50594 * 182.36853 * 6 5 4 8 8 N 1.46502 * 109.50085 * 62.28735 * 6 5 4 9 9 C 1.38831 * 119.99799 * 65.33042 * 8 6 5 10 10 C 1.39966 * 119.96949 * 353.37687 * 9 8 6 11 11 N 1.32128 * 120.31522 * 179.97438 * 10 9 8 12 12 C 1.31928 * 120.27470 * 0.02562 * 11 10 9 13 13 C 1.40682 * 119.93458 * 359.97438 * 12 11 10 14 14 C 1.41269 * 120.15780 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99868 * 354.83741 * 14 13 12 16 16 C 1.40052 * 120.00085 * 174.83967 * 14 13 12 17 17 N 1.30730 * 120.00180 * 5.18578 * 16 14 13 18 18 Si 1.86799 * 120.00078 * 185.17920 * 16 14 13 19 19 H 1.48503 * 109.47130 * 90.00006 * 18 16 14 20 20 H 1.48500 * 109.47362 * 210.00110 * 18 16 14 21 21 H 1.48497 * 109.47162 * 330.00067 * 18 16 14 22 22 N 1.32238 * 119.97017 * 173.09808 * 9 8 6 23 23 C 1.46848 * 110.99342 * 124.20544 * 2 1 3 24 24 H 1.09008 * 109.46714 * 63.96168 * 1 2 3 25 25 H 1.09002 * 109.47330 * 183.95475 * 1 2 3 26 26 H 1.08994 * 109.47399 * 303.96275 * 1 2 3 27 27 H 1.09000 * 109.46749 * 65.82398 * 3 2 1 28 28 H 1.08997 * 109.46327 * 305.84552 * 3 2 1 29 29 H 1.08998 * 109.50739 * 180.88190 * 4 3 2 30 30 H 1.09006 * 109.53685 * 60.78025 * 4 3 2 31 31 H 1.08998 * 109.51936 * 297.75043 * 5 4 3 32 32 H 1.08991 * 109.57868 * 177.58745 * 5 4 3 33 33 H 1.08998 * 109.47122 * 304.97981 * 7 6 5 34 34 H 1.08994 * 109.47416 * 64.97725 * 7 6 5 35 35 H 1.08999 * 109.47285 * 184.98177 * 7 6 5 36 36 H 0.97002 * 120.00421 * 245.32915 * 8 6 5 37 37 H 1.08000 * 119.84275 * 0.02562 * 10 9 8 38 38 H 1.07997 * 120.03227 * 179.97438 * 12 11 10 39 39 H 0.96995 * 120.00456 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.46521 * 54.14914 * 23 2 1 41 41 H 1.09000 * 109.46775 * 294.17674 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 3.5181 -0.8714 1.0211 7 6 4.0686 -1.6560 2.2136 8 7 3.8719 -1.5598 -0.2228 9 6 5.1988 -1.8647 -0.4941 10 6 6.2111 -1.3940 0.3501 11 7 7.4762 -1.6804 0.0986 12 6 7.7964 -2.4125 -0.9512 13 6 6.7878 -2.8913 -1.8071 14 6 7.1253 -3.6760 -2.9323 15 1 8.1625 -3.8402 -3.1847 16 6 6.1149 -4.2410 -3.7205 17 7 4.8616 -3.9604 -3.4766 18 14 6.5580 -5.3955 -5.1206 19 1 6.6019 -6.7915 -4.6160 20 1 5.5361 -5.2887 -6.1927 21 1 7.8883 -5.0243 -5.6661 22 7 5.5048 -2.6041 -1.5469 23 6 1.9951 -0.7707 1.1339 24 1 -0.3633 0.4512 -0.9234 25 1 -0.3634 -1.0252 0.0709 26 1 -0.3634 0.5741 0.8523 27 1 1.7324 1.8609 0.9375 28 1 1.5635 1.9256 -0.8330 29 1 3.9099 2.3512 -0.1309 30 1 3.7820 0.8571 -1.0906 31 1 3.8886 1.0356 1.9561 32 1 5.1998 0.4713 0.8919 33 1 5.1581 -1.6490 2.1814 34 1 3.7296 -1.1936 3.1405 35 1 3.7104 -2.6845 2.1684 36 1 3.1790 -1.8026 -0.8568 37 1 5.9569 -0.7945 1.2117 38 1 8.8317 -2.6439 -1.1533 39 1 4.1617 -4.3520 -4.0222 40 1 1.5633 -1.7715 1.1244 41 1 1.7323 -0.2708 2.0661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162338208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:07 Heat of formation + Delta-G solvation = 43.673954 kcal Electronic energy + Delta-G solvation = -22315.989534 eV Core-core repulsion = 19230.276451 eV Total energy + Delta-G solvation = -3085.713084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 3.83 seconds Orbital eigenvalues (eV) -41.37681 -40.01182 -36.85565 -35.70037 -34.18570 -33.16028 -32.21856 -30.13236 -28.53570 -27.38209 -27.29192 -24.42460 -23.57855 -23.42186 -22.24968 -20.36528 -19.12283 -18.25919 -17.37918 -16.91128 -16.60160 -16.46663 -16.13227 -15.51013 -15.34141 -15.07981 -14.90308 -14.53220 -14.09818 -13.60631 -13.41875 -13.31073 -13.21636 -12.99282 -12.94063 -12.85960 -12.69752 -12.39596 -12.20261 -11.98284 -11.88962 -11.71852 -11.52470 -11.28236 -11.11502 -11.00165 -10.13538 -9.24055 -9.20867 -8.31938 -8.25016 -6.57656 0.91943 1.34723 1.42245 1.56317 1.58279 2.22858 2.57191 2.88117 3.04435 3.67244 3.86123 4.00594 4.03965 4.11531 4.23074 4.37441 4.44092 4.53186 4.54799 4.60788 4.63336 4.67593 4.74724 4.80160 4.82733 4.87315 4.95233 5.04790 5.07012 5.08855 5.21577 5.29639 5.37874 5.41205 5.43749 5.81060 6.12192 6.15328 6.19516 6.40103 6.72435 6.83489 7.15464 7.55255 8.18865 8.40389 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020539 B = 0.005588 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.909737 B = 5009.093980 C = 5815.276985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.563 5.563 3 C 0.065 3.935 4 C -0.110 4.110 5 C -0.141 4.141 6 C 0.190 3.810 7 C -0.171 4.171 8 N -0.699 5.699 9 C 0.375 3.625 10 C -0.178 4.178 11 N -0.420 5.420 12 C -0.146 4.146 13 C 0.218 3.782 14 C -0.448 4.448 15 H 0.097 0.903 16 C 0.024 3.976 17 N -0.743 5.743 18 Si 0.991 3.009 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.253 1.253 22 N -0.543 5.543 23 C 0.067 3.933 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.395 0.605 37 H 0.168 0.832 38 H 0.135 0.865 39 H 0.280 0.720 40 H 0.077 0.923 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.444 6.880 6.797 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.288 5.288 3 C -0.062 4.062 4 C -0.148 4.148 5 C -0.180 4.180 6 C 0.102 3.898 7 C -0.230 4.230 8 N -0.333 5.333 9 C 0.129 3.871 10 C -0.340 4.340 11 N -0.132 5.132 12 C -0.314 4.314 13 C 0.090 3.910 14 C -0.481 4.481 15 H 0.115 0.885 16 C -0.199 4.199 17 N -0.364 5.364 18 Si 0.811 3.189 19 H -0.188 1.188 20 H -0.193 1.193 21 H -0.176 1.176 22 N -0.271 5.271 23 C -0.062 4.062 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.230 0.770 37 H 0.184 0.816 38 H 0.153 0.847 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.525 6.742 6.518 14.097 hybrid contribution -0.129 -0.326 -0.282 0.450 sum -10.654 6.417 6.236 13.913 Atomic orbital electron populations 1.22352 0.85721 1.02322 1.01433 1.61740 1.08852 1.14471 1.43754 1.22046 0.94437 0.88638 1.01121 1.21444 0.95383 0.99804 0.98184 1.22287 1.00960 0.95097 0.99624 1.20342 0.94488 0.91388 0.83547 1.22459 1.02478 1.00083 0.97969 1.44320 1.02912 1.63701 1.22360 1.19834 0.87226 0.89255 0.90791 1.23080 0.88244 1.15856 1.06867 1.67541 1.20386 1.08612 1.16670 1.22949 0.99468 1.10597 0.98345 1.19496 0.87507 0.90717 0.93266 1.19996 0.95448 1.25340 1.07290 0.88542 1.27059 0.94186 0.97909 1.00764 1.70213 1.01266 1.31789 1.33127 0.85073 0.79580 0.77846 0.76395 1.18813 1.19277 1.17631 1.69055 1.19453 1.19537 1.19034 1.22225 0.92122 0.98993 0.92824 0.91123 0.91271 0.94322 0.93160 0.90530 0.90567 0.94579 0.89052 0.91933 0.92014 0.88910 0.93364 0.77006 0.81577 0.84719 0.90929 0.90468 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.62 127.69 1.23 1.76 16 2 N -0.56 -13.48 4.57 -922.58 -4.22 -17.70 16 3 C 0.07 1.44 5.46 86.33 0.47 1.91 16 4 C -0.11 -3.01 5.93 30.65 0.18 -2.83 16 5 C -0.14 -3.91 4.53 30.68 0.14 -3.77 16 6 C 0.19 5.58 0.67 3.66 0.00 5.58 16 7 C -0.17 -4.86 8.19 71.98 0.59 -4.27 16 8 N -0.70 -27.90 4.51 -304.24 -1.37 -29.28 16 9 C 0.37 18.58 7.24 133.37 0.97 19.55 16 10 C -0.18 -8.52 8.09 85.07 0.69 -7.83 16 11 N -0.42 -22.06 10.47 -192.23 -2.01 -24.08 16 12 C -0.15 -8.01 10.97 85.28 0.94 -7.07 16 13 C 0.22 12.66 6.54 40.15 0.26 12.92 16 14 C -0.45 -24.66 9.15 23.46 0.21 -24.45 16 15 H 0.10 4.91 7.85 -2.91 -0.02 4.88 16 16 C 0.02 1.22 5.49 85.30 0.47 1.69 16 17 N -0.74 -39.98 11.50 21.84 0.25 -39.73 16 18 Si 0.99 37.97 29.56 68.60 2.03 40.00 16 19 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 20 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 21 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 22 N -0.54 -31.06 8.09 -185.99 -1.50 -32.57 16 23 C 0.07 1.56 4.24 86.33 0.37 1.92 16 24 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.07 1.23 8.02 -2.39 -0.02 1.21 16 26 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 28 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.28 7.73 -2.38 -0.02 1.27 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 2.10 4.80 -2.39 -0.01 2.09 16 33 H 0.06 2.07 4.65 -2.39 -0.01 2.06 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.39 16.76 8.40 -92.71 -0.78 15.98 16 37 H 0.17 6.87 3.26 -2.91 -0.01 6.87 16 38 H 0.14 6.83 8.06 -2.91 -0.02 6.81 16 39 H 0.28 13.60 8.29 -92.71 -0.77 12.83 16 40 H 0.08 1.85 8.04 -2.39 -0.02 1.83 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -66.55 318.48 -0.05 -66.60 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: 0.26 Total: 41.64 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 6.51 Total: -4.89 kcal Atomic # 7 Polarization: -134.50 SS G_CDS: -8.85 Total: -143.35 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -66.55 -0.05 -66.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162338208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.273 kcal (2) G-P(sol) polarization free energy of solvation -66.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.83 seconds