Wall clock time and date at job start Mon Mar 30 2020 01:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.52880 * 2 1 4 4 C 1.53099 * 109.48809 * 239.91021 * 2 1 3 5 5 C 1.53126 * 109.15071 * 182.39661 * 4 2 1 6 6 C 1.53039 * 109.28009 * 57.65227 * 5 4 2 7 7 N 1.46854 * 109.52227 * 300.82107 * 6 5 4 8 8 C 1.38533 * 110.99797 * 185.83757 * 7 6 5 9 9 C 1.39727 * 120.48544 * 55.50941 * 8 7 6 10 10 C 1.38149 * 118.48511 * 179.77891 * 9 8 7 11 11 N 1.32472 * 119.29100 * 0.49694 * 10 9 8 12 12 C 1.32508 * 120.93489 * 359.74592 * 11 10 9 13 13 N 1.38433 * 119.17523 * 179.97438 * 12 11 10 14 14 C 1.36991 * 119.99882 * 0.02562 * 13 12 11 15 15 H 1.07997 * 120.00287 * 0.02562 * 14 13 12 16 16 C 1.38829 * 119.99835 * 180.02562 * 14 13 12 17 17 N 1.31540 * 120.00169 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99922 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46976 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46763 * 120.00449 * 18 16 14 21 21 H 1.48497 * 109.47072 * 240.00124 * 18 16 14 22 22 N 1.32516 * 121.64694 * 359.97438 * 12 11 10 23 23 C 1.46847 * 111.19790 * 61.74204 * 7 6 5 24 24 H 1.08995 * 109.46994 * 299.90035 * 1 2 3 25 25 H 1.08995 * 109.46862 * 59.90149 * 1 2 3 26 26 H 1.08999 * 109.46201 * 179.89981 * 1 2 3 27 27 H 1.09001 * 109.46793 * 180.09888 * 3 2 1 28 28 H 1.09001 * 109.47310 * 300.09590 * 3 2 1 29 29 H 1.08996 * 109.47225 * 60.10186 * 3 2 1 30 30 H 1.08990 * 109.52931 * 62.49409 * 4 2 1 31 31 H 1.09002 * 109.57693 * 302.32940 * 4 2 1 32 32 H 1.08994 * 109.50076 * 297.71308 * 5 4 2 33 33 H 1.08998 * 109.53581 * 177.61293 * 5 4 2 34 34 H 1.08993 * 109.46667 * 180.80353 * 6 5 4 35 35 H 1.09008 * 109.45973 * 60.82938 * 6 5 4 36 36 H 1.08002 * 120.75893 * 0.02562 * 9 8 7 37 37 H 1.07999 * 120.35265 * 180.26739 * 10 9 8 38 38 H 0.96997 * 120.00093 * 180.02562 * 13 12 11 39 39 H 0.97005 * 120.00194 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.46481 * 58.27472 * 23 7 6 41 41 H 1.08994 * 109.46283 * 178.25325 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0415 1.4420 0.0000 4 6 2.0408 -0.7236 -1.2488 5 6 3.5709 -0.7716 -1.2110 6 6 4.0229 -1.4727 0.0720 7 7 3.5093 -0.7419 1.2377 8 6 4.0075 -1.2736 2.4159 9 6 5.3857 -1.3900 2.6142 10 6 5.8372 -1.9219 3.8065 11 7 4.9573 -2.3124 4.7165 12 6 3.6554 -2.1949 4.4996 13 7 2.7680 -2.6152 5.4754 14 6 3.2394 -3.1444 6.6478 15 1 4.3032 -3.2332 6.8109 16 6 2.3495 -3.5664 7.6262 17 7 1.0537 -3.4587 7.4273 18 14 2.9922 -4.2873 9.2252 19 1 4.4770 -4.2982 9.2016 20 1 2.5217 -3.4604 10.3653 21 1 2.4889 -5.6758 9.3798 22 7 3.1816 -1.6851 3.3719 23 6 2.0410 -0.7234 1.2481 24 1 -0.3633 0.5123 0.8908 25 1 -0.3633 0.5153 -0.8891 26 1 -0.3632 -1.0277 -0.0018 27 1 3.1316 1.4409 -0.0018 28 1 1.6773 1.9567 -0.8891 29 1 1.6802 1.9557 0.8909 30 1 1.7152 -0.1868 -2.1397 31 1 1.6449 -1.7389 -1.2702 32 1 3.9673 0.2435 -1.2300 33 1 3.9397 -1.3227 -2.0761 34 1 5.1120 -1.4959 0.1089 35 1 3.6374 -2.4923 0.0839 36 1 6.0822 -1.0678 1.8542 37 1 6.8963 -2.0216 3.9933 38 1 1.8125 -2.5351 5.3291 39 1 0.4318 -3.7539 8.1108 40 1 1.6649 -1.7464 1.2544 41 1 1.6907 -0.2021 2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:45 Heat of formation + Delta-G solvation = 52.556169 kcal Electronic energy + Delta-G solvation = -21719.968811 eV Core-core repulsion = 18634.640889 eV Total energy + Delta-G solvation = -3085.327922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.37908 -38.92661 -35.77010 -34.58219 -32.62137 -32.03922 -30.83291 -28.99515 -27.18990 -26.55299 -25.06354 -24.69748 -22.38331 -22.07678 -20.71037 -18.43128 -17.98116 -17.27711 -16.16470 -15.46993 -14.91611 -14.67137 -14.54600 -14.24740 -14.18456 -14.04495 -13.52073 -13.46787 -13.41838 -12.77768 -12.63359 -12.03182 -11.83823 -11.73676 -11.62901 -11.36588 -11.33290 -10.97058 -10.73972 -10.49838 -10.39846 -10.36301 -10.28314 -10.13965 -9.89953 -9.60861 -9.01786 -8.14306 -7.93684 -7.21312 -6.59799 -3.81224 2.25309 2.33501 3.16567 3.18735 3.25439 3.86554 4.05661 4.64466 4.66383 4.72891 4.82912 4.89812 5.06633 5.30117 5.34944 5.40482 5.42991 5.51013 5.63515 5.69587 5.75385 5.78990 5.87474 5.94090 5.96222 6.03495 6.10802 6.15309 6.17373 6.23233 6.30029 6.35740 6.47433 6.54968 6.61760 7.01021 7.21345 7.42552 7.60933 7.96638 8.33780 8.65718 9.05816 9.28565 9.88244 10.56695 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.025584 B = 0.004397 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.175738 B = 6366.940308 C = 7163.793303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.133 4.133 4 C -0.111 4.111 5 C -0.118 4.118 6 C 0.064 3.936 7 N -0.472 5.472 8 C 0.396 3.604 9 C -0.374 4.374 10 C 0.204 3.796 11 N -0.589 5.589 12 C 0.516 3.484 13 N -0.504 5.504 14 C -0.280 4.280 15 H 0.116 0.884 16 C 0.018 3.982 17 N -0.889 5.889 18 Si 0.939 3.061 19 H -0.264 1.264 20 H -0.280 1.280 21 H -0.280 1.280 22 N -0.629 5.629 23 C 0.081 3.919 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.119 0.881 37 H 0.145 0.855 38 H 0.409 0.591 39 H 0.276 0.724 40 H 0.045 0.955 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 5.286 -15.217 16.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.190 4.190 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.062 4.062 7 N -0.189 5.189 8 C 0.150 3.850 9 C -0.408 4.408 10 C 0.033 3.967 11 N -0.315 5.315 12 C 0.160 3.840 13 N -0.115 5.115 14 C -0.411 4.411 15 H 0.134 0.866 16 C -0.186 4.186 17 N -0.527 5.527 18 Si 0.765 3.235 19 H -0.189 1.189 20 H -0.205 1.205 21 H -0.206 1.206 22 N -0.361 5.361 23 C -0.046 4.046 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.137 0.863 37 H 0.162 0.838 38 H 0.246 0.754 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.533 5.260 -14.096 15.123 hybrid contribution 0.066 -0.687 0.171 0.711 sum 1.600 4.573 -13.925 14.743 Atomic orbital electron populations 1.21812 0.94391 1.01798 1.01731 1.20675 0.95119 0.96256 0.94735 1.21796 1.02191 0.94379 1.00683 1.21671 0.95519 1.00301 0.97405 1.21663 0.96013 1.01685 0.96237 1.22154 1.00628 0.94946 0.88516 1.58871 1.10079 1.49383 1.00613 1.19388 0.89847 0.86509 0.89276 1.21286 0.94520 1.21697 1.03297 1.22376 0.98285 0.88257 0.87825 1.67893 1.01669 1.28001 1.33952 1.18866 0.85979 0.92858 0.86327 1.40555 1.06824 1.52048 1.12032 1.20045 0.95202 1.35043 0.90852 0.86591 1.25434 0.95001 0.97838 1.00334 1.69700 1.01346 1.45828 1.35779 0.85644 0.79309 0.78334 0.80199 1.18851 1.20546 1.20567 1.67571 1.39546 1.24442 1.04586 1.21954 0.85119 0.99860 0.97714 0.92362 0.92689 0.92716 0.91352 0.93610 0.92989 0.91884 0.92203 0.90678 0.91366 0.89764 0.94166 0.86331 0.83757 0.75383 0.91455 0.93633 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.48 37.16 0.32 -1.21 16 2 C -0.07 -0.81 0.77 -154.43 -0.12 -0.93 16 3 C -0.13 -1.54 8.04 37.16 0.30 -1.24 16 4 C -0.11 -1.16 4.79 -26.62 -0.13 -1.29 16 5 C -0.12 -1.21 5.74 -26.65 -0.15 -1.37 16 6 C 0.06 0.85 5.25 -3.83 -0.02 0.82 16 7 N -0.47 -7.61 3.96 -173.06 -0.69 -8.29 16 8 C 0.40 7.84 6.41 -154.86 -0.99 6.85 16 9 C -0.37 -6.90 9.26 -39.06 -0.36 -7.27 16 10 C 0.20 4.02 11.28 -17.31 -0.20 3.82 16 11 N -0.59 -14.12 9.09 -13.99 -0.13 -14.25 16 12 C 0.52 13.00 8.38 -322.72 -2.71 10.29 16 13 N -0.50 -13.45 5.43 -12.79 -0.07 -13.52 16 14 C -0.28 -7.62 9.69 -15.03 -0.15 -7.76 16 15 H 0.12 3.18 7.04 -52.49 -0.37 2.81 16 16 C 0.02 0.47 5.50 -17.46 -0.10 0.37 16 17 N -0.89 -24.20 13.05 55.49 0.72 -23.47 16 18 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 19 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 N -0.63 -14.47 8.86 -13.13 -0.12 -14.59 16 23 C 0.08 1.27 3.39 -3.84 -0.01 1.25 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.84 6.01 -51.93 -0.31 0.52 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.76 6.58 -51.93 -0.34 0.42 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.04 6.72 -51.93 -0.35 0.70 16 35 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.12 1.84 7.20 -52.49 -0.38 1.46 16 37 H 0.15 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.41 11.09 8.01 -40.82 -0.33 10.76 16 39 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 41 H 0.09 1.54 7.72 -51.93 -0.40 1.14 16 LS Contribution 325.32 15.07 4.90 4.90 Total: -1.00 -28.86 325.32 -10.97 -39.84 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -6.26 Total: 11.61 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -4.32 Total: 2.36 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -0.27 Total: -74.12 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.86 -10.97 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.392 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds