Wall clock time and date at job start Mon Mar 30 2020 02:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.50563 * 2 1 4 4 C 1.53123 * 109.50142 * 120.07781 * 2 1 3 5 5 C 1.53119 * 109.16390 * 62.28837 * 4 2 1 6 6 C 1.53036 * 109.27523 * 57.64804 * 5 4 2 7 7 H 1.08999 * 109.46285 * 60.83608 * 6 5 4 8 8 C 1.53009 * 109.46062 * 180.80333 * 6 5 4 9 9 N 1.46897 * 109.47096 * 295.60149 * 8 6 5 10 10 N 1.46838 * 109.52282 * 300.81818 * 6 5 4 11 11 C 1.38825 * 111.00696 * 185.84695 * 10 6 5 12 12 C 1.39952 * 119.97355 * 122.56757 * 11 10 6 13 13 N 1.32129 * 120.31989 * 179.75297 * 12 11 10 14 14 C 1.31930 * 120.27214 * 0.52666 * 13 12 11 15 15 C 1.40690 * 119.92974 * 359.73423 * 14 13 12 16 16 C 1.41274 * 120.15217 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00510 * 353.32452 * 16 15 14 18 18 C 1.40055 * 119.99641 * 173.32742 * 16 15 14 19 19 N 1.30729 * 120.00189 * 6.63499 * 18 16 15 20 20 Si 1.86806 * 119.99901 * 186.64232 * 18 16 15 21 21 H 1.48501 * 109.47283 * 59.99489 * 20 18 16 22 22 H 1.48496 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46904 * 299.99614 * 20 18 16 24 24 N 1.32248 * 119.96571 * 302.84617 * 11 10 6 25 25 C 1.46853 * 111.19825 * 61.75581 * 10 6 5 26 26 H 1.09003 * 109.47515 * 299.92166 * 1 2 3 27 27 H 1.09007 * 109.47224 * 59.92311 * 1 2 3 28 28 H 1.09004 * 109.47232 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.52378 * 302.38048 * 4 2 1 30 30 H 1.09007 * 109.56812 * 182.22455 * 4 2 1 31 31 H 1.09004 * 109.50082 * 297.71378 * 5 4 2 32 32 H 1.08994 * 109.53665 * 177.61171 * 5 4 2 33 33 H 1.09004 * 109.46287 * 55.60502 * 8 6 5 34 34 H 1.08995 * 109.47019 * 175.60033 * 8 6 5 35 35 H 1.00906 * 110.99777 * 183.93087 * 9 8 6 36 36 H 1.00892 * 111.00644 * 307.88941 * 9 8 6 37 37 H 1.08001 * 119.84383 * 0.02562 * 12 11 10 38 38 H 1.07998 * 120.03411 * 179.74966 * 14 13 12 39 39 H 0.97004 * 120.00065 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.46785 * 178.23028 * 25 10 6 41 41 H 1.09010 * 109.45941 * 58.25341 * 25 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0411 -0.7234 1.2490 5 6 1.5749 -2.1814 1.2116 6 6 2.0845 -2.8419 -0.0714 7 1 3.1742 -2.8195 -0.0833 8 6 1.6041 -4.2938 -0.1228 9 7 2.2071 -5.0485 0.9838 10 7 1.5673 -2.1139 -1.2370 11 6 1.9023 -2.7626 -2.4177 12 6 0.8968 -3.1631 -3.3050 13 7 1.2082 -3.7767 -4.4330 14 6 2.4696 -4.0264 -4.7280 15 6 3.4889 -3.6335 -3.8414 16 6 4.8412 -3.8990 -4.1523 17 1 5.0892 -4.4979 -5.0161 18 6 5.8602 -3.3857 -3.3402 19 7 5.5610 -2.7721 -2.2253 20 14 7.6470 -3.5776 -3.8502 21 1 7.8622 -2.9117 -5.1600 22 1 8.5235 -2.9523 -2.8276 23 1 7.9756 -5.0209 -3.9688 24 7 3.1710 -3.0064 -2.7005 25 6 2.0408 -0.7239 -1.2478 26 1 -0.3634 0.5126 0.8907 27 1 -0.3634 0.5151 -0.8893 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6441 -0.2368 2.1399 30 1 3.1304 -0.6897 1.2703 31 1 0.4856 -2.2157 1.2306 32 1 1.9709 -2.7130 2.0768 33 1 0.5182 -4.3204 -0.0317 34 1 1.9002 -4.7411 -1.0716 35 1 1.9563 -6.0247 0.9347 36 1 3.2093 -4.9329 0.9967 37 1 -0.1384 -2.9659 -3.0687 38 1 2.7195 -4.5318 -5.6491 39 1 6.2668 -2.4162 -1.6630 40 1 1.6669 -0.2197 -2.1388 41 1 3.1308 -0.7116 -1.2540 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164075052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:43 Heat of formation + Delta-G solvation = 39.934027 kcal Electronic energy + Delta-G solvation = -22739.137593 eV Core-core repulsion = 19653.262334 eV Total energy + Delta-G solvation = -3085.875259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.88688 -38.19729 -34.71508 -34.13204 -33.66520 -31.41052 -30.52038 -29.16381 -26.78868 -26.13036 -24.45126 -23.50450 -22.30706 -21.31766 -20.21586 -18.30707 -17.66111 -16.60180 -15.49456 -15.28258 -15.13290 -14.91252 -14.77167 -14.07638 -13.88156 -13.57597 -13.43467 -12.96854 -12.87696 -12.46825 -12.01254 -11.79083 -11.61671 -11.55760 -11.39490 -11.38472 -10.89972 -10.80755 -10.56572 -10.47958 -10.22369 -9.93031 -9.89197 -9.81339 -9.57662 -9.00047 -8.33189 -8.08370 -7.72720 -7.37528 -6.56197 -4.75526 2.41269 2.87467 2.95810 2.97434 3.13821 3.77541 4.36670 4.55197 5.03526 5.16947 5.19430 5.34109 5.52995 5.63143 5.68350 5.84956 5.90740 5.96727 5.97691 6.08263 6.09814 6.18192 6.29300 6.35187 6.39193 6.40989 6.44978 6.49018 6.58070 6.64550 6.72225 6.81884 6.91125 6.94176 7.16185 7.40314 7.49711 7.65792 7.77513 7.85392 8.08786 8.41088 8.69192 9.20015 9.75715 10.04731 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.006921 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.352750 B = 4044.641171 C = 4420.679596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 H 0.065 0.935 4 C -0.116 4.116 5 C -0.101 4.101 6 C 0.098 3.902 7 H 0.061 0.939 8 C 0.073 3.927 9 N -0.847 5.847 10 N -0.472 5.472 11 C 0.271 3.729 12 C -0.088 4.088 13 N -0.427 5.427 14 C -0.072 4.072 15 C 0.217 3.783 16 C -0.417 4.417 17 H 0.088 0.912 18 C 0.069 3.931 19 N -0.712 5.712 20 Si 0.910 3.090 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.263 1.263 24 N -0.474 5.474 25 C 0.073 3.927 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.336 0.664 36 H 0.339 0.661 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.275 0.725 40 H 0.064 0.936 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 2.379 6.636 7.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.153 4.153 5 C -0.139 4.139 6 C -0.010 4.010 7 H 0.079 0.921 8 C -0.058 4.058 9 N -0.375 5.375 10 N -0.196 5.196 11 C 0.032 3.968 12 C -0.249 4.249 13 N -0.139 5.139 14 C -0.241 4.241 15 C 0.090 3.910 16 C -0.450 4.450 17 H 0.106 0.894 18 C -0.157 4.157 19 N -0.333 5.333 20 Si 0.734 3.266 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.188 1.188 24 N -0.195 5.195 25 C -0.055 4.055 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.204 2.997 7.349 8.559 hybrid contribution 2.248 -0.557 -1.125 2.574 sum -0.957 2.440 6.224 6.754 Atomic orbital electron populations 1.21745 0.94884 1.02778 1.00018 1.21173 0.96518 0.98151 0.94839 0.91673 1.21622 1.00360 0.96300 0.97035 1.21553 1.01054 0.94359 0.96911 1.21451 0.98431 0.91839 0.89325 0.92096 1.21702 0.99037 0.93336 0.91739 1.58802 1.15831 1.14715 1.48188 1.60074 1.57865 1.01745 0.99951 1.20767 0.90747 0.94105 0.91208 1.22302 0.98405 1.10044 0.94099 1.67717 1.21022 1.08590 1.16598 1.23130 0.89042 1.09878 1.02076 1.19237 0.94299 0.89535 0.87969 1.19576 0.89134 1.26918 1.09326 0.89353 1.26091 1.01594 0.93874 0.94152 1.70064 1.34507 1.21160 1.07545 0.86330 0.80933 0.79776 0.79560 1.18748 1.20150 1.18790 1.69505 1.15665 1.16004 1.18334 1.21964 0.98736 0.87686 0.97103 0.94033 0.93400 0.91041 0.92504 0.92416 0.91663 0.91153 0.91275 0.95201 0.85323 0.84904 0.85293 0.85083 0.91377 0.91759 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.75 37.15 0.33 -1.54 16 2 C -0.09 -1.30 3.21 -90.54 -0.29 -1.59 16 3 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.12 -1.65 5.51 -26.61 -0.15 -1.80 16 5 C -0.10 -1.55 4.89 -26.65 -0.13 -1.68 16 6 C 0.10 1.80 1.79 -67.72 -0.12 1.68 16 7 H 0.06 1.32 7.96 -51.93 -0.41 0.91 16 8 C 0.07 1.32 6.05 -3.82 -0.02 1.30 16 9 N -0.85 -13.00 9.09 -10.37 -0.09 -13.09 16 10 N -0.47 -9.24 3.76 -165.51 -0.62 -9.86 16 11 C 0.27 6.25 3.57 -155.01 -0.55 5.70 16 12 C -0.09 -2.07 11.17 -16.78 -0.19 -2.25 16 13 N -0.43 -10.51 10.47 -12.11 -0.13 -10.64 16 14 C -0.07 -1.79 10.97 -16.58 -0.18 -1.97 16 15 C 0.22 5.67 6.54 -84.83 -0.55 5.12 16 16 C -0.42 -10.47 9.15 -37.75 -0.35 -10.82 16 17 H 0.09 2.06 7.86 -52.49 -0.41 1.65 16 18 C 0.07 1.64 5.49 -17.34 -0.10 1.55 16 19 N -0.71 -17.48 11.51 55.55 0.64 -16.85 16 20 Si 0.91 17.59 29.57 -169.99 -5.03 12.56 16 21 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 24 N -0.47 -12.05 7.47 -10.14 -0.08 -12.12 16 25 C 0.07 1.35 4.75 -3.83 -0.02 1.33 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.06 6.01 -51.93 -0.31 0.75 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.06 0.99 6.58 -51.93 -0.34 0.65 16 32 H 0.07 1.06 7.76 -51.93 -0.40 0.66 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.03 0.65 6.91 -51.93 -0.36 0.29 16 35 H 0.34 4.57 9.08 -39.29 -0.36 4.21 16 36 H 0.34 5.32 8.94 -39.30 -0.35 4.96 16 37 H 0.13 2.79 8.06 -52.49 -0.42 2.37 16 38 H 0.13 2.97 8.06 -52.49 -0.42 2.54 16 39 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 40 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 41 H 0.05 1.08 8.11 -51.92 -0.42 0.66 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -26.56 325.58 -9.03 -35.59 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -6.31 Total: 14.49 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.32 Total: -4.99 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.28 Total: -62.56 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.56 -9.03 -35.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164075052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.520 kcal (2) G-P(sol) polarization free energy of solvation -26.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds