Wall clock time and date at job start Mon Mar 30 2020 02:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.50563 * 2 1 4 4 C 1.53123 * 109.50142 * 120.07781 * 2 1 3 5 5 C 1.53119 * 109.16390 * 62.28837 * 4 2 1 6 6 C 1.53036 * 109.27523 * 57.64804 * 5 4 2 7 7 H 1.08999 * 109.46285 * 60.83608 * 6 5 4 8 8 C 1.53009 * 109.46062 * 180.80333 * 6 5 4 9 9 N 1.46897 * 109.47096 * 295.60149 * 8 6 5 10 10 N 1.46838 * 109.52282 * 300.81818 * 6 5 4 11 11 C 1.38825 * 111.00696 * 185.84695 * 10 6 5 12 12 C 1.39952 * 119.97355 * 122.56757 * 11 10 6 13 13 N 1.32129 * 120.31989 * 179.75297 * 12 11 10 14 14 C 1.31930 * 120.27214 * 0.52666 * 13 12 11 15 15 C 1.40690 * 119.92974 * 359.73423 * 14 13 12 16 16 C 1.41274 * 120.15217 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00510 * 353.32452 * 16 15 14 18 18 C 1.40055 * 119.99641 * 173.32742 * 16 15 14 19 19 N 1.30729 * 120.00189 * 6.63499 * 18 16 15 20 20 Si 1.86806 * 119.99901 * 186.64232 * 18 16 15 21 21 H 1.48501 * 109.47283 * 59.99489 * 20 18 16 22 22 H 1.48496 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46904 * 299.99614 * 20 18 16 24 24 N 1.32248 * 119.96571 * 302.84617 * 11 10 6 25 25 C 1.46853 * 111.19825 * 61.75581 * 10 6 5 26 26 H 1.09003 * 109.47515 * 299.92166 * 1 2 3 27 27 H 1.09007 * 109.47224 * 59.92311 * 1 2 3 28 28 H 1.09004 * 109.47232 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.52378 * 302.38048 * 4 2 1 30 30 H 1.09007 * 109.56812 * 182.22455 * 4 2 1 31 31 H 1.09004 * 109.50082 * 297.71378 * 5 4 2 32 32 H 1.08994 * 109.53665 * 177.61171 * 5 4 2 33 33 H 1.09004 * 109.46287 * 55.60502 * 8 6 5 34 34 H 1.08995 * 109.47019 * 175.60033 * 8 6 5 35 35 H 1.00906 * 110.99777 * 183.93087 * 9 8 6 36 36 H 1.00892 * 111.00644 * 307.88941 * 9 8 6 37 37 H 1.08001 * 119.84383 * 0.02562 * 12 11 10 38 38 H 1.07998 * 120.03411 * 179.74966 * 14 13 12 39 39 H 0.97004 * 120.00065 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.46785 * 178.23028 * 25 10 6 41 41 H 1.09010 * 109.45941 * 58.25341 * 25 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0411 -0.7234 1.2490 5 6 1.5749 -2.1814 1.2116 6 6 2.0845 -2.8419 -0.0714 7 1 3.1742 -2.8195 -0.0833 8 6 1.6041 -4.2938 -0.1228 9 7 2.2071 -5.0485 0.9838 10 7 1.5673 -2.1139 -1.2370 11 6 1.9023 -2.7626 -2.4177 12 6 0.8968 -3.1631 -3.3050 13 7 1.2082 -3.7767 -4.4330 14 6 2.4696 -4.0264 -4.7280 15 6 3.4889 -3.6335 -3.8414 16 6 4.8412 -3.8990 -4.1523 17 1 5.0892 -4.4979 -5.0161 18 6 5.8602 -3.3857 -3.3402 19 7 5.5610 -2.7721 -2.2253 20 14 7.6470 -3.5776 -3.8502 21 1 7.8622 -2.9117 -5.1600 22 1 8.5235 -2.9523 -2.8276 23 1 7.9756 -5.0209 -3.9688 24 7 3.1710 -3.0064 -2.7005 25 6 2.0408 -0.7239 -1.2478 26 1 -0.3634 0.5126 0.8907 27 1 -0.3634 0.5151 -0.8893 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6441 -0.2368 2.1399 30 1 3.1304 -0.6897 1.2703 31 1 0.4856 -2.2157 1.2306 32 1 1.9709 -2.7130 2.0768 33 1 0.5182 -4.3204 -0.0317 34 1 1.9002 -4.7411 -1.0716 35 1 1.9563 -6.0247 0.9347 36 1 3.2093 -4.9329 0.9967 37 1 -0.1384 -2.9659 -3.0687 38 1 2.7195 -4.5318 -5.6491 39 1 6.2668 -2.4162 -1.6630 40 1 1.6669 -0.2197 -2.1388 41 1 3.1308 -0.7116 -1.2540 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164075052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:43 Heat of formation + Delta-G solvation = 22.142366 kcal Electronic energy + Delta-G solvation = -22739.909097 eV Core-core repulsion = 19653.262334 eV Total energy + Delta-G solvation = -3086.646763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55955 -39.84469 -36.09959 -35.95167 -35.26388 -33.26006 -31.85051 -30.93826 -28.07619 -27.96254 -26.00224 -24.90169 -24.12667 -23.00999 -21.73487 -19.77374 -19.39921 -18.25743 -17.18880 -17.09004 -16.78570 -16.57002 -16.17383 -15.52701 -15.28307 -15.01899 -14.89281 -14.55681 -14.42910 -14.01932 -13.42320 -13.35795 -13.24985 -13.15399 -13.01371 -12.74781 -12.54222 -12.18774 -12.14013 -11.83217 -11.68022 -11.53333 -11.43556 -11.22172 -11.19053 -10.81153 -9.83294 -9.75926 -9.57362 -9.18016 -8.39228 -6.68506 0.55171 1.05718 1.36535 1.47804 1.50411 2.14079 2.71361 2.80417 3.63516 3.69374 3.84301 3.91208 4.04827 4.10304 4.20198 4.25323 4.32772 4.48582 4.51396 4.60875 4.65903 4.75838 4.90400 4.90920 4.98275 5.01221 5.02189 5.07253 5.15681 5.21519 5.24910 5.32510 5.37286 5.50285 5.65509 5.71691 5.98176 6.00993 6.15157 6.25234 6.47051 6.54570 6.82195 7.28611 7.85710 8.25031 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.006921 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.352750 B = 4044.641171 C = 4420.679596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.081 4.081 3 H 0.083 0.917 4 C -0.112 4.112 5 C -0.091 4.091 6 C 0.104 3.896 7 H 0.023 0.977 8 C 0.085 3.915 9 N -0.832 5.832 10 N -0.462 5.462 11 C 0.271 3.729 12 C -0.099 4.099 13 N -0.434 5.434 14 C -0.093 4.093 15 C 0.187 3.813 16 C -0.441 4.441 17 H 0.099 0.901 18 C 0.027 3.973 19 N -0.739 5.739 20 Si 0.988 3.012 21 H -0.260 1.260 22 H -0.269 1.269 23 H -0.256 1.256 24 N -0.492 5.492 25 C 0.076 3.924 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.076 0.924 34 H -0.014 1.014 35 H 0.348 0.652 36 H 0.338 0.662 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.281 0.719 40 H 0.052 0.948 41 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 3.057 8.143 8.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.100 4.100 3 H 0.101 0.899 4 C -0.149 4.149 5 C -0.129 4.129 6 C -0.004 4.004 7 H 0.042 0.958 8 C -0.047 4.047 9 N -0.361 5.361 10 N -0.186 5.186 11 C 0.032 3.968 12 C -0.260 4.260 13 N -0.146 5.146 14 C -0.261 4.261 15 C 0.060 3.940 16 C -0.472 4.472 17 H 0.117 0.883 18 C -0.197 4.197 19 N -0.360 5.360 20 Si 0.808 3.192 21 H -0.184 1.184 22 H -0.194 1.194 23 H -0.180 1.180 24 N -0.213 5.213 25 C -0.051 4.051 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.004 0.996 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -3.183 3.659 8.855 10.096 hybrid contribution 2.197 -0.769 -1.560 2.802 sum -0.985 2.890 7.295 7.908 Atomic orbital electron populations 1.21687 0.93393 1.02369 1.01369 1.21176 0.97606 0.98428 0.92780 0.89915 1.21616 0.99763 0.95562 0.97970 1.21495 1.01505 0.94975 0.94881 1.21442 0.96227 0.92398 0.90374 0.95840 1.21533 0.99405 0.93248 0.90467 1.58786 1.15632 1.15465 1.46260 1.60213 1.57246 1.02071 0.99099 1.21109 0.90120 0.93368 0.92196 1.22634 0.99331 1.09984 0.94038 1.67709 1.20964 1.08814 1.17148 1.23322 0.89070 1.10913 1.02783 1.19686 0.95352 0.90324 0.88681 1.19983 0.89495 1.27564 1.10200 0.88335 1.26993 1.05874 0.93018 0.93766 1.70158 1.36205 1.21253 1.08399 0.85157 0.74898 0.79982 0.79167 1.18382 1.19361 1.18009 1.69535 1.16831 1.16517 1.18423 1.21977 0.96632 0.87434 0.99094 0.91316 0.93468 0.92274 0.89266 0.93613 0.90617 0.90394 0.90519 0.99567 0.83972 0.85018 0.83570 0.83704 0.90816 0.92895 0.96610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.75 71.98 0.63 -2.56 16 2 C -0.08 -2.25 3.21 -10.74 -0.03 -2.28 16 3 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.11 -2.92 5.51 30.67 0.17 -2.75 16 5 C -0.09 -2.62 4.89 30.65 0.15 -2.47 16 6 C 0.10 3.85 1.79 44.94 0.08 3.93 16 7 H 0.02 1.06 7.96 -2.39 -0.02 1.04 16 8 C 0.09 3.10 6.05 86.31 0.52 3.63 16 9 N -0.83 -25.07 9.09 -186.71 -1.70 -26.77 16 10 N -0.46 -18.33 3.76 -677.55 -2.55 -20.88 16 11 C 0.27 12.95 3.57 133.37 0.48 13.42 16 12 C -0.10 -4.75 11.17 85.06 0.95 -3.80 16 13 N -0.43 -21.86 10.47 -192.23 -2.01 -23.88 16 14 C -0.09 -4.76 10.97 85.28 0.94 -3.83 16 15 C 0.19 10.12 6.54 40.16 0.26 10.38 16 16 C -0.44 -22.65 9.15 23.46 0.21 -22.44 16 17 H 0.10 4.66 7.86 -2.91 -0.02 4.64 16 18 C 0.03 1.31 5.49 85.30 0.47 1.77 16 19 N -0.74 -37.22 11.51 21.84 0.25 -36.97 16 20 Si 0.99 35.90 29.57 68.60 2.03 37.93 16 21 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 22 H -0.27 -9.37 7.11 99.48 0.71 -8.67 16 23 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 24 N -0.49 -26.03 7.47 -186.00 -1.39 -27.42 16 25 C 0.08 2.87 4.75 86.32 0.41 3.28 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.06 1.60 6.01 -2.38 -0.01 1.58 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.31 8.14 -2.38 -0.02 1.30 16 31 H 0.08 2.08 6.58 -2.38 -0.02 2.06 16 32 H 0.08 2.17 7.76 -2.39 -0.02 2.15 16 33 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 34 H -0.01 -0.64 6.91 -2.39 -0.02 -0.65 16 35 H 0.35 9.17 9.08 -89.69 -0.81 8.35 16 36 H 0.34 10.59 8.94 -89.70 -0.80 9.78 16 37 H 0.15 6.34 8.06 -2.91 -0.02 6.32 16 38 H 0.15 6.75 8.06 -2.91 -0.02 6.73 16 39 H 0.28 12.94 8.29 -92.71 -0.77 12.17 16 40 H 0.05 2.07 8.10 -2.39 -0.02 2.05 16 41 H 0.02 0.69 8.11 -2.38 -0.02 0.67 16 Total: -1.00 -59.31 325.58 -0.70 -60.02 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: -0.57 Total: 41.69 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 5.23 Total: -3.72 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -7.39 Total: -135.92 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Total: -59.31 -0.70 -60.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164075052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.160 kcal (2) G-P(sol) polarization free energy of solvation -59.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds