Wall clock time and date at job start Mon Mar 30 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.53269 * 2 1 4 4 C 1.53119 * 109.50264 * 239.89691 * 2 1 3 5 5 C 1.53121 * 109.15522 * 182.40621 * 4 2 1 6 6 C 1.53029 * 109.28204 * 57.65842 * 5 4 2 7 7 H 1.08995 * 109.46712 * 60.83373 * 6 5 4 8 8 C 1.52999 * 109.45638 * 180.80875 * 6 5 4 9 9 N 1.46905 * 109.47302 * 179.62002 * 8 6 5 10 10 N 1.46847 * 109.52384 * 300.81552 * 6 5 4 11 11 C 1.38825 * 111.00522 * 185.83523 * 10 6 5 12 12 C 1.39969 * 119.96566 * 116.68756 * 11 10 6 13 13 N 1.32130 * 120.31341 * 180.02562 * 12 11 10 14 14 C 1.31930 * 120.27663 * 359.70276 * 13 12 11 15 15 C 1.40688 * 119.93231 * 0.57724 * 14 13 12 16 16 C 1.41260 * 120.15986 * 179.70130 * 15 14 13 17 17 H 1.08002 * 120.00192 * 154.48145 * 16 15 14 18 18 C 1.40062 * 119.99824 * 334.47994 * 16 15 14 19 19 N 1.30725 * 120.00140 * 331.84799 * 18 16 15 20 20 Si 1.86803 * 119.99967 * 151.84901 * 18 16 15 21 21 H 1.48504 * 109.46978 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.46888 * 299.99685 * 20 18 16 23 23 H 1.48491 * 109.47148 * 59.99595 * 20 18 16 24 24 N 1.32238 * 119.97239 * 296.72062 * 11 10 6 25 25 C 1.46854 * 111.19345 * 61.74439 * 10 6 5 26 26 H 1.09004 * 109.47040 * 180.10058 * 1 2 3 27 27 H 1.09001 * 109.47100 * 300.09797 * 1 2 3 28 28 H 1.08998 * 109.46753 * 60.10502 * 1 2 3 29 29 H 1.08997 * 109.52303 * 62.50430 * 4 2 1 30 30 H 1.09001 * 109.57731 * 302.33892 * 4 2 1 31 31 H 1.08998 * 109.50569 * 297.71394 * 5 4 2 32 32 H 1.09007 * 109.53114 * 177.61767 * 5 4 2 33 33 H 1.08999 * 109.47148 * 299.61975 * 8 6 5 34 34 H 1.08999 * 109.47309 * 59.61922 * 8 6 5 35 35 H 1.00896 * 110.99612 * 66.32446 * 9 8 6 36 36 H 1.00900 * 110.99943 * 190.27546 * 9 8 6 37 37 H 1.07998 * 119.84341 * 0.05511 * 12 11 10 38 38 H 1.08002 * 120.03633 * 180.29753 * 14 13 12 39 39 H 0.97001 * 119.99974 * 353.27739 * 19 18 16 40 40 H 1.08995 * 109.46417 * 58.27359 * 25 10 6 41 41 H 1.09005 * 109.46233 * 178.24558 * 25 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0412 -0.7239 -1.2487 5 6 3.5712 -0.7720 -1.2105 6 6 4.0229 -1.4730 0.0726 7 1 3.6375 -2.4925 0.0845 8 6 5.5517 -1.5054 0.1245 9 7 5.9858 -2.1702 1.3605 10 7 3.5093 -0.7421 1.2380 11 6 4.0081 -1.2748 2.4190 12 6 4.8250 -0.4962 3.2470 13 7 5.3039 -0.9964 4.3723 14 6 5.0114 -2.2327 4.7282 15 6 4.1962 -3.0271 3.9012 16 6 3.8852 -4.3535 4.2746 17 1 2.9819 -4.8195 3.9095 18 6 4.7483 -5.0642 5.1181 19 7 6.0261 -4.7883 5.1285 20 14 4.0736 -6.4064 6.2284 21 1 5.1830 -7.0012 7.0163 22 1 3.0671 -5.8249 7.1525 23 1 3.4343 -7.4596 5.3995 24 7 3.7117 -2.5175 2.7602 25 6 2.0409 -0.7235 1.2481 26 1 -0.3633 -1.0277 0.0018 27 1 -0.3633 0.5154 0.8891 28 1 -0.3633 0.5122 -0.8909 29 1 1.7157 -0.1872 -2.1397 30 1 1.6453 -1.7393 -1.2700 31 1 3.9678 0.2431 -1.2296 32 1 3.9402 -1.3232 -2.0756 33 1 5.9329 -2.0544 -0.7365 34 1 5.9376 -0.4861 0.1053 35 1 5.7290 -3.1459 1.3555 36 1 6.9785 -2.0582 1.5018 37 1 5.0645 0.5185 2.9651 38 1 5.4011 -2.6361 5.6511 39 1 6.3922 -4.1617 4.4849 40 1 1.6648 -1.7464 1.2545 41 1 1.6904 -0.2022 2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164075056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:46 Heat of formation + Delta-G solvation = 36.349539 kcal Electronic energy + Delta-G solvation = -22581.909031 eV Core-core repulsion = 19495.878337 eV Total energy + Delta-G solvation = -3086.030694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.95935 -38.15949 -35.06793 -34.19753 -33.31435 -31.71249 -31.29395 -28.58821 -26.92564 -25.78898 -24.55765 -22.82789 -22.13377 -21.57796 -20.33536 -19.35529 -18.02537 -16.20814 -15.81599 -15.34324 -15.06163 -14.87751 -14.44692 -14.18156 -14.08464 -13.84575 -13.35750 -13.05793 -12.79762 -12.65885 -12.34137 -11.91509 -11.76671 -11.57191 -11.40804 -11.30301 -11.06306 -10.72934 -10.56222 -10.42461 -10.30474 -10.18820 -10.00746 -9.68882 -9.42100 -9.01757 -8.33745 -8.23839 -7.31117 -7.22427 -7.11846 -4.57242 2.63067 2.98191 3.15220 3.30330 3.36535 3.97873 4.25781 4.56965 4.76606 4.86960 4.98436 5.14056 5.34964 5.43887 5.60149 5.64883 5.70021 5.70328 5.77185 5.82134 5.88075 5.93171 6.03347 6.05759 6.12422 6.15266 6.22340 6.29195 6.38975 6.44015 6.59647 6.67243 6.95252 7.29182 7.48527 7.59860 7.62218 7.66177 7.87803 7.95569 8.14042 8.51857 8.81391 9.30925 9.80731 9.97244 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022202 B = 0.005673 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.847845 B = 4934.585236 C = 5317.402267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.111 4.111 6 C 0.095 3.905 7 H 0.048 0.952 8 C 0.072 3.928 9 N -0.827 5.827 10 N -0.476 5.476 11 C 0.337 3.663 12 C -0.053 4.053 13 N -0.425 5.425 14 C -0.064 4.064 15 C 0.236 3.764 16 C -0.501 4.501 17 H 0.079 0.921 18 C 0.045 3.955 19 N -0.787 5.787 20 Si 1.068 2.932 21 H -0.273 1.273 22 H -0.273 1.273 23 H -0.276 1.276 24 N -0.557 5.557 25 C 0.069 3.931 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.022 0.978 34 H 0.073 0.927 35 H 0.343 0.657 36 H 0.333 0.667 37 H 0.121 0.879 38 H 0.134 0.866 39 H 0.298 0.702 40 H 0.043 0.957 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 4.439 -10.201 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.094 0.906 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.013 4.013 7 H 0.066 0.934 8 C -0.060 4.060 9 N -0.356 5.356 10 N -0.200 5.200 11 C 0.099 3.901 12 C -0.214 4.214 13 N -0.137 5.137 14 C -0.231 4.231 15 C 0.108 3.892 16 C -0.534 4.534 17 H 0.097 0.903 18 C -0.179 4.179 19 N -0.410 5.410 20 Si 0.891 3.109 21 H -0.198 1.198 22 H -0.199 1.199 23 H -0.202 1.202 24 N -0.280 5.280 25 C -0.059 4.059 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.092 0.908 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.152 0.848 39 H 0.111 0.889 40 H 0.062 0.938 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.341 4.388 -8.690 10.659 hybrid contribution 0.008 -0.336 -1.896 1.926 sum -4.333 4.051 -10.586 12.135 Atomic orbital electron populations 1.21778 0.95277 1.01748 1.01438 1.21178 0.94847 1.00164 0.94568 0.90568 1.21607 0.95483 1.00452 0.97475 1.21595 0.95792 1.01266 0.96250 1.21582 0.94241 0.95834 0.89673 0.93417 1.21757 0.94631 0.99218 0.90377 1.58876 1.20360 1.19725 1.36676 1.60082 1.07600 1.51852 1.00489 1.19943 0.91195 0.89422 0.89498 1.21980 1.04735 0.99775 0.94862 1.67719 1.17600 1.13446 1.14924 1.23190 1.07223 0.91150 1.01576 1.18990 0.89207 0.94061 0.86947 1.20229 1.09024 0.97455 1.26678 0.90276 1.27043 0.93429 1.00701 0.96715 1.70426 1.13043 1.26586 1.30931 0.83597 0.76400 0.74737 0.76149 1.19817 1.19884 1.20158 1.68780 1.29894 1.12074 1.17250 1.22024 0.86998 0.99483 0.97345 0.92803 0.92647 0.92778 0.92119 0.92301 0.91181 0.91972 0.96032 0.90844 0.84359 0.85397 0.86128 0.84827 0.88886 0.93823 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.20 37.16 0.34 -1.27 16 2 C -0.09 -1.16 2.88 -90.53 -0.26 -1.42 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.11 -1.36 5.29 -26.61 -0.14 -1.50 16 5 C -0.11 -1.42 5.37 -26.65 -0.14 -1.56 16 6 C 0.10 1.57 2.16 -67.73 -0.15 1.42 16 7 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 8 C 0.07 1.14 6.28 -3.82 -0.02 1.11 16 9 N -0.83 -15.36 5.47 -10.37 -0.06 -15.42 16 10 N -0.48 -8.81 4.48 -165.51 -0.74 -9.55 16 11 C 0.34 7.48 2.87 -155.02 -0.44 7.04 16 12 C -0.05 -1.23 10.18 -16.78 -0.17 -1.40 16 13 N -0.42 -10.76 10.47 -12.11 -0.13 -10.88 16 14 C -0.06 -1.70 9.24 -16.59 -0.15 -1.85 16 15 C 0.24 6.22 6.10 -84.83 -0.52 5.70 16 16 C -0.50 -13.16 9.19 -37.75 -0.35 -13.51 16 17 H 0.08 2.10 7.98 -52.49 -0.42 1.68 16 18 C 0.04 1.11 4.86 -17.34 -0.08 1.02 16 19 N -0.79 -20.18 12.32 55.55 0.68 -19.50 16 20 Si 1.07 21.12 30.02 -169.99 -5.10 16.01 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 24 N -0.56 -13.74 8.90 -10.14 -0.09 -13.83 16 25 C 0.07 1.18 4.54 -3.83 -0.02 1.16 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.34 6.99 8.64 -39.29 -0.34 6.65 16 36 H 0.33 5.82 9.08 -39.29 -0.36 5.46 16 37 H 0.12 2.66 8.06 -52.49 -0.42 2.24 16 38 H 0.13 3.64 6.60 -52.49 -0.35 3.29 16 39 H 0.30 7.92 6.98 -40.82 -0.29 7.63 16 40 H 0.04 0.83 8.02 -51.93 -0.42 0.42 16 41 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -27.32 324.05 -9.11 -36.42 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -6.45 Total: 16.91 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -2.11 Total: -5.05 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -0.33 Total: -69.18 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.10 Total: 16.01 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.32 -9.11 -36.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164075056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.773 kcal (2) G-P(sol) polarization free energy of solvation -27.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds