Wall clock time and date at job start Mon Mar 30 2020 02:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.45444 * 2 1 4 4 C 1.53035 * 109.46755 * 240.02197 * 2 1 3 5 5 C 1.53115 * 109.28054 * 180.80431 * 4 2 1 6 6 C 1.53112 * 109.16203 * 57.65789 * 5 4 2 7 7 H 1.09000 * 109.50597 * 62.28385 * 6 5 4 8 8 C 1.53004 * 109.50370 * 182.36481 * 6 5 4 9 9 N 1.46898 * 109.47058 * 184.99859 * 8 6 5 10 10 C 1.53039 * 109.27640 * 302.34320 * 6 5 4 11 11 N 1.46849 * 109.46237 * 119.96838 * 2 1 3 12 12 C 1.38823 * 111.00225 * 305.85680 * 11 2 1 13 13 C 1.39960 * 119.97044 * 111.83336 * 12 11 2 14 14 N 1.32129 * 120.32098 * 180.02562 * 13 12 11 15 15 C 1.31934 * 120.27005 * 359.97438 * 14 13 12 16 16 C 1.40683 * 119.93402 * 0.02562 * 15 14 13 17 17 C 1.41268 * 120.15475 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00252 * 353.87912 * 17 16 15 19 19 C 1.40061 * 119.99685 * 173.87845 * 17 16 15 20 20 N 1.30729 * 120.00077 * 6.36235 * 19 17 16 21 21 Si 1.86800 * 119.99721 * 186.36610 * 19 17 16 22 22 H 1.48504 * 109.46866 * 94.98617 * 21 19 17 23 23 H 1.48498 * 109.46722 * 214.98340 * 21 19 17 24 24 H 1.48494 * 109.47301 * 334.98602 * 21 19 17 25 25 N 1.32232 * 119.96960 * 291.56355 * 12 11 2 26 26 H 1.08998 * 109.47125 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47017 * 299.97708 * 1 2 3 28 28 H 1.08999 * 109.46934 * 59.97996 * 1 2 3 29 29 H 1.09007 * 109.50078 * 60.86140 * 4 2 1 30 30 H 1.08997 * 109.50494 * 300.75322 * 4 2 1 31 31 H 1.09007 * 109.52242 * 177.56453 * 5 4 2 32 32 H 1.08995 * 109.52237 * 297.74677 * 5 4 2 33 33 H 1.09000 * 109.46756 * 304.99710 * 8 6 5 34 34 H 1.09004 * 109.47226 * 65.00085 * 8 6 5 35 35 H 1.00902 * 111.00067 * 56.04333 * 9 8 6 36 36 H 1.00896 * 111.00035 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.46220 * 179.19311 * 10 6 5 38 38 H 1.09003 * 109.46281 * 299.17473 * 10 6 5 39 39 H 1.08007 * 119.83990 * 0.02562 * 13 12 11 40 40 H 1.07994 * 120.02968 * 179.97438 * 15 14 13 41 41 H 0.96998 * 120.00023 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7210 -1.2498 5 6 3.5710 -0.7361 -1.2354 6 6 4.0548 -1.4187 0.0469 7 1 3.7126 -2.4535 0.0597 8 6 5.5837 -1.3857 0.0976 9 7 6.0513 -2.1441 1.2655 10 6 3.4865 -0.6775 1.2592 11 7 2.0193 -0.6916 1.1995 12 6 1.4693 -0.1424 2.3497 13 6 0.5617 -0.8846 3.1140 14 7 0.0337 -0.3685 4.2097 15 6 0.3579 0.8516 4.5932 16 6 1.2690 1.6075 3.8332 17 6 1.6190 2.9145 4.2392 18 1 1.1148 3.3730 5.0769 19 6 2.6202 3.6157 3.5553 20 7 3.1434 3.1134 2.4677 21 14 3.2077 5.2686 4.1973 22 1 4.4147 5.0717 5.0397 23 1 3.5418 6.1537 3.0527 24 1 2.1337 5.8942 5.0098 25 7 1.8074 1.0797 2.7250 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5135 0.8902 28 1 -0.3633 0.5141 -0.8898 29 1 1.6896 -0.1983 -2.1399 30 1 1.6660 -1.7447 -1.2575 31 1 3.9381 -1.2863 -2.1019 32 1 3.9457 0.2870 -1.2671 33 1 5.9870 -1.8326 -0.8111 34 1 5.9224 -0.3526 0.1758 35 1 5.6964 -3.0885 1.2492 36 1 7.0587 -2.1376 1.3211 37 1 3.8174 -1.1697 2.1737 38 1 3.8402 0.3535 1.2531 39 1 0.2917 -1.8843 2.8068 40 1 -0.0764 1.2698 5.4892 41 1 3.8365 3.5992 1.9938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164467655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:31 Heat of formation + Delta-G solvation = 17.652005 kcal Electronic energy + Delta-G solvation = -22446.910756 eV Core-core repulsion = 19360.069276 eV Total energy + Delta-G solvation = -3086.841480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.44375 -39.74399 -36.60308 -35.90491 -34.51589 -33.14505 -32.61914 -30.89853 -28.36710 -27.97516 -25.79822 -24.40188 -23.90124 -22.98471 -21.58613 -20.57097 -19.48986 -17.94084 -17.26439 -17.03656 -16.67360 -16.52578 -16.22888 -15.58808 -15.39981 -15.19250 -14.90540 -14.51384 -14.00425 -13.83050 -13.54963 -13.34896 -13.28210 -13.03007 -12.92741 -12.84122 -12.66087 -12.48734 -12.07313 -11.79902 -11.65894 -11.58071 -11.46074 -11.35905 -11.22208 -10.81523 -9.79909 -9.61152 -9.48964 -9.15868 -8.36342 -6.65815 0.58868 1.08698 1.37121 1.49815 1.52002 2.15838 2.74211 2.89752 3.60259 3.72053 3.90629 3.93594 4.03186 4.10807 4.17320 4.25373 4.37392 4.47627 4.54299 4.63161 4.66020 4.76384 4.78838 4.81666 4.89969 4.97769 5.03827 5.08260 5.09771 5.18525 5.21753 5.23812 5.29437 5.39959 5.57502 5.69860 6.01533 6.19925 6.27797 6.30550 6.57356 6.67048 6.85622 7.31678 7.89688 8.28152 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.014522 B = 0.006995 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.702556 B = 4002.134312 C = 4739.105457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.089 3.911 3 H 0.015 0.985 4 C -0.099 4.099 5 C -0.110 4.110 6 C -0.072 4.072 7 H 0.082 0.918 8 C 0.075 3.925 9 N -0.864 5.864 10 C 0.093 3.907 11 N -0.472 5.472 12 C 0.276 3.724 13 C -0.098 4.098 14 N -0.435 5.435 15 C -0.094 4.094 16 C 0.186 3.814 17 C -0.441 4.441 18 H 0.100 0.900 19 C 0.024 3.976 20 N -0.741 5.741 21 Si 0.990 3.010 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.250 1.250 25 N -0.496 5.496 26 H 0.072 0.928 27 H 0.012 0.988 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.347 0.653 36 H 0.349 0.651 37 H 0.047 0.953 38 H 0.015 0.985 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.189 -5.072 -9.639 12.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.019 4.019 3 H 0.033 0.967 4 C -0.136 4.136 5 C -0.148 4.148 6 C -0.091 4.091 7 H 0.100 0.900 8 C -0.056 4.056 9 N -0.396 5.396 10 C -0.034 4.034 11 N -0.196 5.196 12 C 0.036 3.964 13 C -0.258 4.258 14 N -0.147 5.147 15 C -0.262 4.262 16 C 0.059 3.941 17 C -0.473 4.473 18 H 0.118 0.882 19 C -0.199 4.199 20 N -0.362 5.362 21 Si 0.810 3.190 22 H -0.190 1.190 23 H -0.192 1.192 24 H -0.173 1.173 25 N -0.217 5.217 26 H 0.091 0.909 27 H 0.031 0.969 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.066 0.934 38 H 0.033 0.967 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.790 -4.991 -9.427 11.693 hybrid contribution 0.856 1.045 0.105 1.355 sum 5.646 -3.946 -9.321 11.590 Atomic orbital electron populations 1.21715 0.94534 1.02271 1.00331 1.21615 0.95265 0.94855 0.90159 0.96705 1.21582 0.95607 1.01425 0.95013 1.21586 0.95484 1.00379 0.97335 1.21170 0.94498 0.99933 0.93502 0.89992 1.21704 0.93849 0.98179 0.91857 1.58572 1.15926 1.20395 1.44716 1.21726 0.85044 0.97947 0.98709 1.60324 1.08302 1.51437 0.99499 1.21073 0.92772 0.90083 0.92479 1.22616 1.04999 1.01859 0.96355 1.67700 1.21301 1.12237 1.13442 1.23308 1.05864 0.93044 1.03971 1.19722 0.90166 0.95168 0.89063 1.20029 1.16581 0.97356 1.13308 0.88200 1.27058 0.95394 1.03443 0.94032 1.70189 1.17184 1.36846 1.11990 0.85065 0.79363 0.75711 0.78877 1.18980 1.19241 1.17325 1.69519 1.26078 1.10374 1.15719 0.90892 0.96918 0.90555 0.89689 0.89988 0.88745 0.93384 0.92819 0.92848 0.83942 0.83744 0.93444 0.96698 0.83585 0.83596 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.89 71.98 0.64 -4.04 16 2 C 0.09 3.31 2.34 44.94 0.10 3.41 16 3 H 0.01 0.67 8.13 -2.39 -0.02 0.65 16 4 C -0.10 -2.61 5.37 30.64 0.16 -2.45 16 5 C -0.11 -2.72 5.29 30.67 0.16 -2.56 16 6 C -0.07 -2.01 2.49 -10.74 -0.03 -2.04 16 7 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 8 C 0.08 1.82 6.18 86.30 0.53 2.36 16 9 N -0.86 -20.59 9.11 -186.71 -1.70 -22.29 16 10 C 0.09 3.74 4.36 86.33 0.38 4.11 16 11 N -0.47 -19.61 4.48 -677.54 -3.03 -22.65 16 12 C 0.28 13.76 3.74 133.38 0.50 14.26 16 13 C -0.10 -4.84 10.94 85.07 0.93 -3.90 16 14 N -0.43 -22.58 10.47 -192.23 -2.01 -24.59 16 15 C -0.09 -4.98 10.97 85.28 0.94 -4.05 16 16 C 0.19 10.48 6.54 40.15 0.26 10.74 16 17 C -0.44 -23.49 9.15 23.46 0.21 -23.28 16 18 H 0.10 4.89 7.85 -2.91 -0.02 4.87 16 19 C 0.02 1.20 5.49 85.30 0.47 1.67 16 20 N -0.74 -39.03 11.51 21.84 0.25 -38.78 16 21 Si 0.99 37.20 29.56 68.60 2.03 39.23 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 23 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 24 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 25 N -0.50 -27.57 7.46 -186.00 -1.39 -28.95 16 26 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.01 0.52 6.96 -2.39 -0.02 0.51 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 35 H 0.35 7.17 8.99 -89.69 -0.81 6.36 16 36 H 0.35 6.73 9.08 -89.70 -0.81 5.92 16 37 H 0.05 2.11 7.75 -2.38 -0.02 2.10 16 38 H 0.01 0.70 7.94 -2.39 -0.02 0.69 16 39 H 0.15 6.54 8.06 -2.91 -0.02 6.52 16 40 H 0.15 7.00 8.06 -2.91 -0.02 6.98 16 41 H 0.28 13.42 8.29 -92.71 -0.77 12.65 16 Total: -1.00 -65.56 330.04 -1.18 -66.73 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: -0.59 Total: 37.07 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 5.26 Total: -5.77 kcal Atomic # 7 Polarization: -129.38 SS G_CDS: -7.88 Total: -137.26 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Total: -65.56 -1.18 -66.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164467655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.385 kcal (2) G-P(sol) polarization free energy of solvation -65.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds