Wall clock time and date at job start Mon Mar 30 2020 02:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.50997 * 2 1 4 4 C 1.53055 * 109.48963 * 239.94784 * 2 1 3 5 5 N 1.46962 * 109.36255 * 181.63511 * 4 2 1 6 6 C 1.38823 * 110.99286 * 183.18668 * 5 4 2 7 7 C 1.39964 * 119.96552 * 169.14782 * 6 5 4 8 8 N 1.32127 * 120.31657 * 180.27182 * 7 6 5 9 9 C 1.31925 * 120.27764 * 0.02562 * 8 7 6 10 10 C 1.40691 * 119.93124 * 359.97438 * 9 8 7 11 11 C 1.41268 * 120.15713 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99820 * 7.19976 * 11 10 9 13 13 C 1.40054 * 119.99750 * 187.19393 * 11 10 9 14 14 N 1.30723 * 120.00132 * 7.21315 * 13 11 10 15 15 Si 1.86803 * 119.99636 * 187.20932 * 13 11 10 16 16 H 1.48508 * 109.46935 * 90.00293 * 15 13 11 17 17 H 1.48496 * 109.47174 * 210.00251 * 15 13 11 18 18 H 1.48496 * 109.47345 * 330.00593 * 15 13 11 19 19 N 1.32240 * 119.97425 * 349.42028 * 6 5 4 20 20 C 1.46953 * 110.87978 * 59.31738 * 5 4 2 21 21 H 1.08998 * 109.48427 * 180.70854 * 20 5 4 22 22 C 1.53001 * 109.49041 * 60.64860 * 20 5 4 23 23 C 1.53041 * 109.36737 * 300.67877 * 20 5 4 24 24 N 1.46952 * 109.36687 * 58.40099 * 23 20 5 25 25 C 1.46903 * 111.00468 * 176.81135 * 24 23 20 26 26 H 1.09001 * 109.47609 * 299.94736 * 1 2 3 27 27 H 1.09008 * 109.47135 * 59.94847 * 1 2 3 28 28 H 1.08995 * 109.47531 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.49147 * 61.66281 * 4 2 1 30 30 H 1.09000 * 109.48345 * 301.59808 * 4 2 1 31 31 H 1.08003 * 119.84156 * 0.25317 * 7 6 5 32 32 H 1.07997 * 120.03378 * 180.02562 * 9 8 7 33 33 H 0.97006 * 120.00140 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47162 * 54.22173 * 22 20 5 35 35 H 1.08998 * 109.47063 * 174.22281 * 22 20 5 36 36 H 1.09004 * 109.47040 * 294.22071 * 22 20 5 37 37 H 1.09001 * 109.49192 * 178.37383 * 23 20 5 38 38 H 1.09003 * 109.49151 * 298.43665 * 23 20 5 39 39 H 1.09002 * 109.46568 * 56.04465 * 25 24 23 40 40 H 1.08995 * 109.47683 * 176.04771 * 25 24 23 41 41 H 1.09007 * 109.46870 * 296.05512 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7226 -1.2489 5 7 3.5097 -0.7553 -1.2264 6 6 4.0118 -1.3411 -2.3805 7 6 5.3805 -1.2671 -2.6634 8 7 5.8651 -1.8176 -3.7625 9 6 5.0626 -2.4416 -4.6034 10 6 3.6849 -2.5225 -4.3299 11 6 2.8214 -3.1900 -5.2268 12 1 3.2301 -3.7386 -6.0626 13 6 1.4353 -3.1406 -5.0319 14 7 0.9324 -2.3647 -4.1078 15 14 0.3053 -4.1832 -6.0928 16 1 0.0989 -5.5042 -5.4463 17 1 -1.0027 -3.4971 -6.2455 18 1 0.9215 -4.3775 -7.4299 19 7 3.1958 -1.9638 -3.2142 20 6 3.9998 -1.4491 -0.0273 21 1 5.0898 -1.4492 -0.0273 22 6 3.4889 -2.8913 -0.0273 23 6 3.4892 -0.7266 1.2215 24 7 2.0202 -0.6938 1.1991 25 6 1.4887 -0.0739 2.4203 26 1 -0.3634 0.5130 0.8904 27 1 -0.3634 0.5147 -0.8896 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7022 -0.1930 -2.1394 30 1 1.6543 -1.7417 -1.2627 31 1 6.0438 -0.7573 -1.9803 32 1 5.4629 -2.8904 -5.5004 33 1 -0.0276 -2.3302 -3.9731 34 1 3.7643 -3.3743 -0.9649 35 1 3.9346 -3.4346 0.8059 36 1 2.4039 -2.8924 0.0770 37 1 3.8277 -1.2562 2.1120 38 1 3.8755 0.2926 1.2354 39 1 1.9150 0.9225 2.5370 40 1 0.4038 0.0013 2.3470 41 1 1.7532 -0.6856 3.2829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164643689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:15 Heat of formation + Delta-G solvation = 64.351287 kcal Electronic energy + Delta-G solvation = -22705.112159 eV Core-core repulsion = 19620.295711 eV Total energy + Delta-G solvation = -3084.816447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.04515 -38.43732 -35.50004 -33.99998 -32.67804 -31.55935 -30.24702 -28.41417 -27.15694 -26.19469 -25.21819 -23.56493 -22.18427 -21.74787 -20.51909 -18.40197 -17.52900 -16.48390 -15.63359 -15.40864 -15.10412 -14.87646 -14.70999 -14.56686 -14.05898 -13.53244 -13.09311 -12.87795 -12.70404 -12.31311 -11.90370 -11.69394 -11.63295 -11.53756 -11.45704 -11.34424 -11.23730 -11.16016 -10.81219 -10.52686 -10.47392 -10.32995 -10.07070 -9.80399 -9.45724 -9.23319 -8.38960 -8.07207 -7.45577 -7.17110 -6.55131 -4.67948 2.51186 2.94057 3.01727 3.04185 3.20003 3.83283 4.09354 4.41639 4.64738 5.08048 5.18529 5.26147 5.45942 5.54080 5.60351 5.68820 5.73333 5.78695 5.84118 5.89513 5.98554 6.03737 6.04937 6.12384 6.19801 6.27974 6.39376 6.44686 6.52063 6.53508 6.75192 6.89195 6.96596 7.06258 7.13537 7.24058 7.30403 7.54544 7.61800 7.92570 8.12943 8.47879 8.73320 9.29556 9.84344 10.11004 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017568 B = 0.007053 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.403845 B = 3969.188316 C = 5126.902939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 H 0.040 0.960 4 C 0.083 3.917 5 N -0.477 5.477 6 C 0.287 3.713 7 C -0.117 4.117 8 N -0.419 5.419 9 C -0.086 4.086 10 C 0.228 3.772 11 C -0.416 4.416 12 H 0.089 0.911 13 C 0.072 3.928 14 N -0.710 5.710 15 Si 0.910 3.090 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.260 1.260 19 N -0.481 5.481 20 C 0.092 3.908 21 H 0.085 0.915 22 C -0.167 4.167 23 C 0.066 3.934 24 N -0.536 5.536 25 C 0.021 3.979 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.276 0.724 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.021 0.979 40 H 0.071 0.929 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 2.387 9.355 10.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 H 0.058 0.942 4 C -0.044 4.044 5 N -0.196 5.196 6 C 0.046 3.954 7 C -0.278 4.278 8 N -0.131 5.131 9 C -0.255 4.255 10 C 0.101 3.899 11 C -0.448 4.448 12 H 0.107 0.893 13 C -0.155 4.155 14 N -0.331 5.331 15 Si 0.734 3.266 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.184 1.184 19 N -0.203 5.203 20 C -0.016 4.016 21 H 0.103 0.897 22 C -0.226 4.226 23 C -0.062 4.062 24 N -0.261 5.261 25 C -0.127 4.127 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.039 0.961 40 H 0.089 0.911 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.326 2.504 9.488 10.361 hybrid contribution -0.505 -0.271 -0.436 0.720 sum -3.831 2.234 9.051 10.079 Atomic orbital electron populations 1.21822 0.94320 1.02603 1.01199 1.21836 0.95094 0.95796 0.90317 0.94164 1.21913 0.85645 1.01557 0.95328 1.59789 1.10462 1.48929 1.00465 1.20663 0.91454 0.91481 0.91846 1.22032 0.92724 1.13139 0.99883 1.67615 1.38992 1.04690 1.01814 1.23033 0.92281 1.08945 1.01268 1.19193 0.90732 0.90088 0.89923 1.19600 0.90542 1.26098 1.08583 0.89277 1.26063 0.99202 0.94944 0.95295 1.70008 1.13445 1.26084 1.23516 0.86282 0.79163 0.80303 0.80886 1.19302 1.20089 1.18411 1.69399 1.34329 1.11959 1.04614 1.21735 0.99217 0.92264 0.88372 0.89732 1.22258 1.02974 0.96100 1.01264 1.22138 0.87409 0.99158 0.97531 1.62157 1.08261 1.53601 1.02103 1.22419 1.00763 0.96867 0.92632 0.92928 0.91988 0.91753 0.89720 0.91252 0.85827 0.85170 0.91286 0.92673 0.93282 0.90939 0.90529 0.94303 0.96069 0.91053 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.88 37.15 0.33 -1.61 16 2 C 0.08 1.24 2.56 -67.66 -0.17 1.06 16 3 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 4 C 0.08 1.65 3.70 -3.76 -0.01 1.63 16 5 N -0.48 -9.72 4.67 -165.33 -0.77 -10.49 16 6 C 0.29 6.84 4.82 -155.02 -0.75 6.09 16 7 C -0.12 -2.81 10.49 -16.78 -0.18 -2.98 16 8 N -0.42 -10.59 10.47 -12.11 -0.13 -10.72 16 9 C -0.09 -2.19 10.97 -16.59 -0.18 -2.37 16 10 C 0.23 6.07 6.51 -84.83 -0.55 5.51 16 11 C -0.42 -10.56 9.15 -37.75 -0.35 -10.91 16 12 H 0.09 2.11 7.86 -52.48 -0.41 1.69 16 13 C 0.07 1.71 5.47 -17.34 -0.09 1.62 16 14 N -0.71 -17.41 11.58 55.55 0.64 -16.76 16 15 Si 0.91 17.70 29.57 -169.99 -5.03 12.67 16 16 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 17 H -0.28 -5.27 7.11 56.52 0.40 -4.86 16 18 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 19 N -0.48 -12.50 6.58 -10.14 -0.07 -12.56 16 20 C 0.09 1.60 2.85 -67.66 -0.19 1.41 16 21 H 0.08 1.45 7.41 -51.93 -0.38 1.06 16 22 C -0.17 -3.04 8.44 37.16 0.31 -2.73 16 23 C 0.07 0.95 5.05 -3.77 -0.02 0.94 16 24 N -0.54 -7.79 4.00 -234.74 -0.94 -8.73 16 25 C 0.02 0.25 9.36 60.07 0.56 0.81 16 26 H 0.05 0.61 6.19 -51.93 -0.32 0.28 16 27 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.89 8.02 -51.93 -0.42 1.48 16 30 H 0.07 1.54 6.24 -51.93 -0.32 1.22 16 31 H 0.12 2.70 7.81 -52.48 -0.41 2.29 16 32 H 0.13 3.02 8.06 -52.49 -0.42 2.60 16 33 H 0.28 6.17 8.29 -40.82 -0.34 5.83 16 34 H 0.05 1.19 7.13 -51.93 -0.37 0.82 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.39 6.10 -51.93 -0.32 1.07 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.76 5.83 -51.93 -0.30 0.46 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -27.61 320.53 -8.95 -36.55 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.20 Total: 6.74 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.29 Total: -1.53 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -1.26 Total: -59.27 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.61 -8.95 -36.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164643689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.905 kcal (2) G-P(sol) polarization free energy of solvation -27.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds