Wall clock time and date at job start Mon Mar 30 2020 02:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.50997 * 2 1 4 4 C 1.53055 * 109.48963 * 239.94784 * 2 1 3 5 5 N 1.46962 * 109.36255 * 181.63511 * 4 2 1 6 6 C 1.38823 * 110.99286 * 183.18668 * 5 4 2 7 7 C 1.39964 * 119.96552 * 169.14782 * 6 5 4 8 8 N 1.32127 * 120.31657 * 180.27182 * 7 6 5 9 9 C 1.31925 * 120.27764 * 0.02562 * 8 7 6 10 10 C 1.40691 * 119.93124 * 359.97438 * 9 8 7 11 11 C 1.41268 * 120.15713 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99820 * 7.19976 * 11 10 9 13 13 C 1.40054 * 119.99750 * 187.19393 * 11 10 9 14 14 N 1.30723 * 120.00132 * 7.21315 * 13 11 10 15 15 Si 1.86803 * 119.99636 * 187.20932 * 13 11 10 16 16 H 1.48508 * 109.46935 * 90.00293 * 15 13 11 17 17 H 1.48496 * 109.47174 * 210.00251 * 15 13 11 18 18 H 1.48496 * 109.47345 * 330.00593 * 15 13 11 19 19 N 1.32240 * 119.97425 * 349.42028 * 6 5 4 20 20 C 1.46953 * 110.87978 * 59.31738 * 5 4 2 21 21 H 1.08998 * 109.48427 * 180.70854 * 20 5 4 22 22 C 1.53001 * 109.49041 * 60.64860 * 20 5 4 23 23 C 1.53041 * 109.36737 * 300.67877 * 20 5 4 24 24 N 1.46952 * 109.36687 * 58.40099 * 23 20 5 25 25 C 1.46903 * 111.00468 * 176.81135 * 24 23 20 26 26 H 1.09001 * 109.47609 * 299.94736 * 1 2 3 27 27 H 1.09008 * 109.47135 * 59.94847 * 1 2 3 28 28 H 1.08995 * 109.47531 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.49147 * 61.66281 * 4 2 1 30 30 H 1.09000 * 109.48345 * 301.59808 * 4 2 1 31 31 H 1.08003 * 119.84156 * 0.25317 * 7 6 5 32 32 H 1.07997 * 120.03378 * 180.02562 * 9 8 7 33 33 H 0.97006 * 120.00140 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47162 * 54.22173 * 22 20 5 35 35 H 1.08998 * 109.47063 * 174.22281 * 22 20 5 36 36 H 1.09004 * 109.47040 * 294.22071 * 22 20 5 37 37 H 1.09001 * 109.49192 * 178.37383 * 23 20 5 38 38 H 1.09003 * 109.49151 * 298.43665 * 23 20 5 39 39 H 1.09002 * 109.46568 * 56.04465 * 25 24 23 40 40 H 1.08995 * 109.47683 * 176.04771 * 25 24 23 41 41 H 1.09007 * 109.46870 * 296.05512 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7226 -1.2489 5 7 3.5097 -0.7553 -1.2264 6 6 4.0118 -1.3411 -2.3805 7 6 5.3805 -1.2671 -2.6634 8 7 5.8651 -1.8176 -3.7625 9 6 5.0626 -2.4416 -4.6034 10 6 3.6849 -2.5225 -4.3299 11 6 2.8214 -3.1900 -5.2268 12 1 3.2301 -3.7386 -6.0626 13 6 1.4353 -3.1406 -5.0319 14 7 0.9324 -2.3647 -4.1078 15 14 0.3053 -4.1832 -6.0928 16 1 0.0989 -5.5042 -5.4463 17 1 -1.0027 -3.4971 -6.2455 18 1 0.9215 -4.3775 -7.4299 19 7 3.1958 -1.9638 -3.2142 20 6 3.9998 -1.4491 -0.0273 21 1 5.0898 -1.4492 -0.0273 22 6 3.4889 -2.8913 -0.0273 23 6 3.4892 -0.7266 1.2215 24 7 2.0202 -0.6938 1.1991 25 6 1.4887 -0.0739 2.4203 26 1 -0.3634 0.5130 0.8904 27 1 -0.3634 0.5147 -0.8896 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7022 -0.1930 -2.1394 30 1 1.6543 -1.7417 -1.2627 31 1 6.0438 -0.7573 -1.9803 32 1 5.4629 -2.8904 -5.5004 33 1 -0.0276 -2.3302 -3.9731 34 1 3.7643 -3.3743 -0.9649 35 1 3.9346 -3.4346 0.8059 36 1 2.4039 -2.8924 0.0770 37 1 3.8277 -1.2562 2.1120 38 1 3.8755 0.2926 1.2354 39 1 1.9150 0.9225 2.5370 40 1 0.4038 0.0013 2.3470 41 1 1.7532 -0.6856 3.2829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164643689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:14 Heat of formation + Delta-G solvation = 46.194925 kcal Electronic energy + Delta-G solvation = -22705.899477 eV Core-core repulsion = 19620.295711 eV Total energy + Delta-G solvation = -3085.603766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65552 -40.07606 -36.94611 -35.87527 -34.13455 -33.29963 -31.90670 -29.97684 -28.55170 -27.80309 -26.73792 -24.94072 -23.92918 -23.39743 -22.03367 -19.81871 -19.38791 -18.17291 -17.28045 -16.96427 -16.80873 -16.47874 -16.29877 -15.85949 -15.31242 -14.94412 -14.73974 -14.53698 -13.98580 -13.75563 -13.39941 -13.34543 -13.08183 -12.95393 -12.93982 -12.74320 -12.59066 -12.57835 -12.45962 -12.07450 -11.89811 -11.74163 -11.62848 -11.51659 -11.28471 -11.04785 -10.19315 -9.36421 -9.22807 -8.97062 -8.39591 -6.63011 0.63926 1.11582 1.40642 1.52297 1.54543 2.18579 2.71838 2.87620 2.97414 3.74828 3.77040 3.95556 4.06198 4.13537 4.19053 4.29976 4.38115 4.41678 4.51040 4.54267 4.63475 4.74265 4.76654 4.78516 4.81395 4.91005 4.94142 5.00200 5.03034 5.11562 5.14013 5.19513 5.28332 5.37963 5.46384 5.67078 5.88932 6.06440 6.13484 6.21652 6.28334 6.59243 6.82519 7.35459 7.92149 8.30329 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017568 B = 0.007053 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.403845 B = 3969.188316 C = 5126.902939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.039 0.961 4 C 0.099 3.901 5 N -0.477 5.477 6 C 0.285 3.715 7 C -0.129 4.129 8 N -0.427 5.427 9 C -0.110 4.110 10 C 0.197 3.803 11 C -0.439 4.439 12 H 0.099 0.901 13 C 0.029 3.971 14 N -0.735 5.735 15 Si 0.989 3.011 16 H -0.266 1.266 17 H -0.267 1.267 18 H -0.253 1.253 19 N -0.500 5.500 20 C 0.088 3.912 21 H 0.089 0.911 22 C -0.153 4.153 23 C 0.073 3.927 24 N -0.547 5.547 25 C 0.022 3.978 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.284 0.716 34 H 0.011 0.989 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.044 0.956 39 H 0.029 0.971 40 H 0.080 0.920 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.160 2.530 11.105 12.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 H 0.057 0.943 4 C -0.029 4.029 5 N -0.196 5.196 6 C 0.043 3.957 7 C -0.290 4.290 8 N -0.139 5.139 9 C -0.279 4.279 10 C 0.070 3.930 11 C -0.470 4.470 12 H 0.117 0.883 13 C -0.196 4.196 14 N -0.355 5.355 15 Si 0.809 3.191 16 H -0.191 1.191 17 H -0.191 1.191 18 H -0.177 1.177 19 N -0.222 5.222 20 C -0.019 4.019 21 H 0.107 0.893 22 C -0.211 4.211 23 C -0.055 4.055 24 N -0.272 5.272 25 C -0.125 4.125 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.095 0.905 34 H 0.030 0.970 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.098 0.902 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.352 2.656 11.251 12.353 hybrid contribution -0.167 -0.277 -0.905 0.961 sum -4.519 2.378 10.347 11.538 Atomic orbital electron populations 1.21773 0.92664 1.02322 1.02478 1.21680 0.96319 0.94934 0.89252 0.94261 1.21673 0.85154 0.99811 0.96271 1.59850 1.10797 1.48594 1.00393 1.21027 0.91535 0.90562 0.92618 1.22383 0.93314 1.13313 1.00027 1.67601 1.39209 1.04867 1.02246 1.23209 0.92252 1.10203 1.02187 1.19641 0.91633 0.90957 0.90749 1.20001 0.91711 1.26393 1.08905 0.88339 1.26967 1.00108 0.95955 0.96538 1.70091 1.14281 1.26736 1.24409 0.85099 0.76940 0.78132 0.78969 1.19089 1.19116 1.17653 1.69423 1.35101 1.12741 1.04976 1.21926 0.99603 0.91932 0.88408 0.89264 1.22108 1.02305 0.96715 1.00009 1.22131 0.87471 0.99348 0.96559 1.62140 1.08330 1.54076 1.02673 1.22498 1.01239 0.97413 0.91339 0.89975 0.92399 0.92766 0.93260 0.94142 0.83808 0.83915 0.90539 0.96999 0.90387 0.92091 0.87575 0.93739 0.95220 0.90161 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 8.88 71.98 0.64 -2.86 16 2 C 0.09 2.66 2.56 44.92 0.12 2.78 16 3 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.10 4.01 3.70 86.31 0.32 4.33 16 5 N -0.48 -19.67 4.67 -676.98 -3.16 -22.84 16 6 C 0.28 14.01 4.82 133.38 0.64 14.66 16 7 C -0.13 -6.32 10.49 85.07 0.89 -5.43 16 8 N -0.43 -22.13 10.47 -192.23 -2.01 -24.14 16 9 C -0.11 -5.81 10.97 85.28 0.94 -4.88 16 10 C 0.20 10.91 6.51 40.15 0.26 11.17 16 11 C -0.44 -22.89 9.15 23.46 0.21 -22.67 16 12 H 0.10 4.75 7.86 -2.91 -0.02 4.73 16 13 C 0.03 1.39 5.47 85.30 0.47 1.86 16 14 N -0.73 -37.01 11.58 21.84 0.25 -36.75 16 15 Si 0.99 36.24 29.57 68.60 2.03 38.26 16 16 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 17 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 18 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 19 N -0.50 -27.10 6.58 -185.99 -1.22 -28.33 16 20 C 0.09 2.99 2.85 44.92 0.13 3.12 16 21 H 0.09 2.94 7.41 -2.39 -0.02 2.92 16 22 C -0.15 -5.53 8.44 71.98 0.61 -4.92 16 23 C 0.07 1.91 5.05 86.31 0.44 2.34 16 24 N -0.55 -14.51 4.00 -896.57 -3.59 -18.10 16 25 C 0.02 0.43 9.36 127.69 1.20 1.62 16 26 H 0.08 1.65 6.19 -2.39 -0.01 1.63 16 27 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 2.31 8.02 -2.39 -0.02 2.29 16 30 H 0.04 1.87 6.24 -2.39 -0.01 1.85 16 31 H 0.14 6.27 7.81 -2.91 -0.02 6.25 16 32 H 0.14 6.87 8.06 -2.91 -0.02 6.85 16 33 H 0.28 12.92 8.29 -92.70 -0.77 12.15 16 34 H 0.01 0.49 7.13 -2.39 -0.02 0.48 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.06 2.33 6.10 -2.39 -0.01 2.32 16 37 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.08 1.39 5.83 -2.39 -0.01 1.38 16 41 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -62.22 320.53 0.17 -62.06 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 1.02 Total: 28.73 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 6.85 Total: 1.11 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -9.73 Total: -130.16 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.26 kcal Total: -62.22 0.17 -62.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164643689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.253 kcal (2) G-P(sol) polarization free energy of solvation -62.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds