Wall clock time and date at job start Mon Mar 30 2020 02:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00155 * 2 1 4 4 C 1.46899 * 110.99712 * 123.95896 * 2 1 3 5 5 H 1.08999 * 109.50669 * 300.07643 * 4 2 1 6 6 C 1.53123 * 109.50119 * 179.97438 * 4 2 1 7 7 C 1.53117 * 109.21190 * 182.32932 * 6 4 2 8 8 C 1.53175 * 109.20683 * 57.62796 * 7 6 4 9 9 N 1.46850 * 109.55753 * 300.85892 * 8 7 6 10 10 C 1.38821 * 111.00000 * 185.83813 * 9 8 7 11 11 C 1.39964 * 119.96757 * 235.79408 * 10 9 8 12 12 N 1.32129 * 120.31227 * 180.02562 * 11 10 9 13 13 C 1.31931 * 120.27828 * 359.97146 * 12 11 10 14 14 C 1.40684 * 119.92692 * 0.02562 * 13 12 11 15 15 C 1.41275 * 120.15295 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99576 * 353.91744 * 15 14 13 17 17 C 1.40048 * 120.00245 * 173.91888 * 15 14 13 18 18 N 1.30728 * 119.99964 * 6.38646 * 17 15 14 19 19 Si 1.86800 * 120.00297 * 186.38445 * 17 15 14 20 20 H 1.48503 * 109.47146 * 94.98498 * 19 17 15 21 21 H 1.48502 * 109.47424 * 214.98637 * 19 17 15 22 22 H 1.48499 * 109.46804 * 334.99084 * 19 17 15 23 23 N 1.32237 * 119.97208 * 55.51658 * 10 9 8 24 24 C 1.46850 * 111.19645 * 61.74172 * 9 8 7 25 25 H 1.09001 * 109.47140 * 296.04353 * 1 2 3 26 26 H 1.09002 * 109.47174 * 56.04530 * 1 2 3 27 27 H 1.09004 * 109.47116 * 176.04090 * 1 2 3 28 28 H 1.09004 * 109.46770 * 183.95106 * 3 2 1 29 29 H 1.08996 * 109.47430 * 303.95937 * 3 2 1 30 30 H 1.09003 * 109.46779 * 63.95604 * 3 2 1 31 31 H 1.08997 * 109.52433 * 302.26885 * 6 4 2 32 32 H 1.09000 * 109.52309 * 62.39777 * 6 4 2 33 33 H 1.09007 * 109.50331 * 177.62714 * 7 6 4 34 34 H 1.08998 * 109.50771 * 297.74837 * 7 6 4 35 35 H 1.09002 * 109.44800 * 180.83292 * 8 7 6 36 36 H 1.09002 * 109.43668 * 60.88150 * 8 7 6 37 37 H 1.07996 * 119.84450 * 359.97438 * 11 10 9 38 38 H 1.08000 * 120.03462 * 179.97438 * 13 12 11 39 39 H 0.97001 * 120.00337 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.46116 * 178.24019 * 24 9 8 41 41 H 1.09000 * 109.45517 * 58.26854 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 1.6451 -0.3215 2.0690 6 6 3.5261 -0.7443 1.1040 7 6 4.0675 -1.5924 2.2582 8 6 3.5194 -3.0176 2.1365 9 7 2.0517 -2.9847 2.1744 10 6 1.5258 -4.2693 2.1979 11 6 0.6043 -4.6654 1.2218 12 7 0.0991 -5.8862 1.2380 13 6 0.4593 -6.7428 2.1745 14 6 1.3848 -6.3561 3.1609 15 6 1.7736 -7.2694 4.1663 16 1 1.2888 -8.2319 4.2382 17 6 2.7874 -6.9268 5.0696 18 7 3.2875 -5.7189 5.0636 19 14 3.4252 -8.1955 6.2832 20 1 4.6336 -8.8525 5.7233 21 1 3.7735 -7.5260 7.5622 22 1 2.3756 -9.2168 6.5289 23 7 1.9000 -5.1192 3.1393 24 6 1.5086 -2.2143 1.0484 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0710 28 1 3.0829 1.3431 -0.0708 29 1 1.5898 1.9164 -0.8523 30 1 1.7044 1.8723 0.9234 31 1 3.8756 -1.1535 0.1561 32 1 3.8782 0.2818 1.2098 33 1 5.1564 -1.6147 2.2139 34 1 3.7500 -1.1606 3.2073 35 1 3.8906 -3.6211 2.9648 36 1 3.8487 -3.4536 1.1933 37 1 0.3042 -3.9698 0.4521 38 1 0.0436 -7.7396 2.1843 39 1 3.9895 -5.4814 5.6895 40 1 0.4195 -2.2344 1.0863 41 1 1.8475 -2.6542 0.1104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165034264.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:11 Heat of formation + Delta-G solvation = 62.730520 kcal Electronic energy + Delta-G solvation = -22015.210412 eV Core-core repulsion = 18930.323683 eV Total energy + Delta-G solvation = -3084.886729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.90461 -38.45576 -36.28158 -34.05152 -33.00529 -31.64238 -29.76326 -29.06902 -27.72041 -25.99852 -24.28652 -23.95506 -22.39752 -21.19844 -20.58679 -19.42368 -17.62497 -16.64452 -15.75149 -15.28215 -15.14427 -14.93641 -14.52571 -14.44017 -14.24634 -14.18511 -13.40292 -13.08745 -12.76298 -12.69557 -12.41033 -12.19268 -11.73293 -11.55544 -11.52415 -11.37966 -11.27183 -11.07447 -10.76407 -10.64898 -10.43963 -10.21249 -10.05948 -9.80613 -9.49455 -9.39252 -8.41566 -8.33738 -7.50840 -7.04504 -6.46726 -4.70378 2.51733 2.96382 3.02441 3.05795 3.19948 3.77972 3.84208 4.42962 4.66196 4.86157 5.04208 5.12639 5.31819 5.34075 5.43128 5.50979 5.58697 5.63332 5.71099 5.76101 5.80936 5.90247 5.95811 5.98663 6.03519 6.08867 6.13962 6.24268 6.28670 6.47700 6.55961 6.59665 6.83171 6.96208 7.01227 7.04291 7.09355 7.49022 7.60459 7.91456 8.08110 8.47904 8.70394 9.30562 9.88259 10.13100 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.004974 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.960682 B = 5628.181675 C = 6505.145232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.543 5.543 3 C 0.024 3.976 4 C 0.088 3.912 5 H 0.050 0.950 6 C -0.114 4.114 7 C -0.115 4.115 8 C 0.068 3.932 9 N -0.472 5.472 10 C 0.292 3.708 11 C -0.160 4.160 12 N -0.416 5.416 13 C -0.087 4.087 14 C 0.227 3.773 15 C -0.412 4.412 16 H 0.091 0.909 17 C 0.067 3.933 18 N -0.705 5.705 19 Si 0.911 3.089 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.259 1.259 23 N -0.466 5.466 24 C 0.068 3.932 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.029 0.971 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.276 0.724 40 H 0.079 0.921 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.178 10.333 -4.288 11.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.268 5.268 3 C -0.124 4.124 4 C -0.021 4.021 5 H 0.067 0.933 6 C -0.152 4.152 7 C -0.154 4.154 8 C -0.058 4.058 9 N -0.190 5.190 10 C 0.050 3.950 11 C -0.320 4.320 12 N -0.127 5.127 13 C -0.257 4.257 14 C 0.100 3.900 15 C -0.444 4.444 16 H 0.109 0.891 17 C -0.160 4.160 18 N -0.325 5.325 19 Si 0.735 3.265 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.183 1.183 23 N -0.187 5.187 24 C -0.060 4.060 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.047 0.953 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.382 10.558 -4.197 11.609 hybrid contribution 0.096 -0.365 0.674 0.772 sum 2.479 10.193 -3.524 11.066 Atomic orbital electron populations 1.22448 0.87367 1.02765 1.00231 1.61954 1.07939 1.13453 1.43427 1.22404 1.01075 0.88803 1.00162 1.21658 0.95167 0.93812 0.91439 0.93251 1.21716 0.94098 0.99901 0.99495 1.21641 0.99614 0.95439 0.98691 1.22115 0.85121 0.96644 1.01939 1.58146 1.07458 1.12091 1.41324 1.20622 0.93837 0.89035 0.91458 1.22619 1.09876 0.95839 1.03702 1.67558 1.20650 1.02145 1.22394 1.23049 1.05442 0.99419 0.97792 1.19232 0.88897 0.89576 0.92300 1.19647 1.14926 1.00872 1.09000 0.89069 1.26132 0.96188 0.95860 0.97799 1.70104 1.16976 1.17593 1.27857 0.86243 0.79920 0.80943 0.79405 1.19344 1.20000 1.18302 1.69169 1.27869 1.01914 1.19776 1.22120 0.99978 0.91824 0.92062 0.95590 0.91574 0.90760 0.91051 0.91642 0.95812 0.91371 0.92038 0.91312 0.91172 0.87753 0.95278 0.85593 0.85075 0.91315 0.90258 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.21 60.07 0.55 0.79 16 2 N -0.54 -6.90 4.89 -243.07 -1.19 -8.08 16 3 C 0.02 0.24 9.11 60.06 0.55 0.79 16 4 C 0.09 1.26 2.10 -67.63 -0.14 1.12 16 5 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.11 -1.51 4.83 -26.61 -0.13 -1.63 16 7 C -0.12 -1.69 6.11 -26.58 -0.16 -1.85 16 8 C 0.07 1.29 5.34 -3.76 -0.02 1.27 16 9 N -0.47 -9.76 4.73 -172.98 -0.82 -10.58 16 10 C 0.29 7.19 6.46 -155.02 -1.00 6.19 16 11 C -0.16 -3.87 10.00 -16.78 -0.17 -4.04 16 12 N -0.42 -10.64 10.47 -12.11 -0.13 -10.76 16 13 C -0.09 -2.23 10.97 -16.59 -0.18 -2.42 16 14 C 0.23 6.18 6.54 -84.84 -0.55 5.63 16 15 C -0.41 -10.62 9.15 -37.75 -0.35 -10.96 16 16 H 0.09 2.16 7.86 -52.48 -0.41 1.75 16 17 C 0.07 1.63 5.49 -17.34 -0.10 1.53 16 18 N -0.70 -17.86 11.51 55.55 0.64 -17.22 16 19 Si 0.91 17.76 29.56 -169.99 -5.03 12.74 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 23 N -0.47 -12.63 7.34 -10.14 -0.07 -12.70 16 24 C 0.07 1.18 3.16 -3.83 -0.01 1.17 16 25 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 27 H 0.07 0.92 6.33 -51.93 -0.33 0.59 16 28 H 0.07 0.69 6.29 -51.93 -0.33 0.36 16 29 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.69 6.50 -51.93 -0.34 0.36 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 2.29 7.59 -51.93 -0.39 1.90 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.13 2.73 5.78 -52.49 -0.30 2.43 16 38 H 0.13 3.06 8.06 -52.49 -0.42 2.63 16 39 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 40 H 0.08 1.39 5.28 -51.93 -0.27 1.12 16 41 H 0.05 0.88 7.72 -51.93 -0.40 0.48 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -29.09 321.22 -9.60 -38.69 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.14 Total: 5.50 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -1.71 Total: -2.41 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -1.57 Total: -59.35 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.09 -9.60 -38.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165034264.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.417 kcal (2) G-P(sol) polarization free energy of solvation -29.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds