Wall clock time and date at job start Mon Mar 30 2020 02:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00155 * 2 1 4 4 C 1.46899 * 110.99712 * 123.95896 * 2 1 3 5 5 H 1.08999 * 109.50669 * 300.07643 * 4 2 1 6 6 C 1.53123 * 109.50119 * 179.97438 * 4 2 1 7 7 C 1.53117 * 109.21190 * 182.32932 * 6 4 2 8 8 C 1.53175 * 109.20683 * 57.62796 * 7 6 4 9 9 N 1.46850 * 109.55753 * 300.85892 * 8 7 6 10 10 C 1.38821 * 111.00000 * 185.83813 * 9 8 7 11 11 C 1.39964 * 119.96757 * 235.79408 * 10 9 8 12 12 N 1.32129 * 120.31227 * 180.02562 * 11 10 9 13 13 C 1.31931 * 120.27828 * 359.97146 * 12 11 10 14 14 C 1.40684 * 119.92692 * 0.02562 * 13 12 11 15 15 C 1.41275 * 120.15295 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99576 * 353.91744 * 15 14 13 17 17 C 1.40048 * 120.00245 * 173.91888 * 15 14 13 18 18 N 1.30728 * 119.99964 * 6.38646 * 17 15 14 19 19 Si 1.86800 * 120.00297 * 186.38445 * 17 15 14 20 20 H 1.48503 * 109.47146 * 94.98498 * 19 17 15 21 21 H 1.48502 * 109.47424 * 214.98637 * 19 17 15 22 22 H 1.48499 * 109.46804 * 334.99084 * 19 17 15 23 23 N 1.32237 * 119.97208 * 55.51658 * 10 9 8 24 24 C 1.46850 * 111.19645 * 61.74172 * 9 8 7 25 25 H 1.09001 * 109.47140 * 296.04353 * 1 2 3 26 26 H 1.09002 * 109.47174 * 56.04530 * 1 2 3 27 27 H 1.09004 * 109.47116 * 176.04090 * 1 2 3 28 28 H 1.09004 * 109.46770 * 183.95106 * 3 2 1 29 29 H 1.08996 * 109.47430 * 303.95937 * 3 2 1 30 30 H 1.09003 * 109.46779 * 63.95604 * 3 2 1 31 31 H 1.08997 * 109.52433 * 302.26885 * 6 4 2 32 32 H 1.09000 * 109.52309 * 62.39777 * 6 4 2 33 33 H 1.09007 * 109.50331 * 177.62714 * 7 6 4 34 34 H 1.08998 * 109.50771 * 297.74837 * 7 6 4 35 35 H 1.09002 * 109.44800 * 180.83292 * 8 7 6 36 36 H 1.09002 * 109.43668 * 60.88150 * 8 7 6 37 37 H 1.07996 * 119.84450 * 359.97438 * 11 10 9 38 38 H 1.08000 * 120.03462 * 179.97438 * 13 12 11 39 39 H 0.97001 * 120.00337 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.46116 * 178.24019 * 24 9 8 41 41 H 1.09000 * 109.45517 * 58.26854 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 1.6451 -0.3215 2.0690 6 6 3.5261 -0.7443 1.1040 7 6 4.0675 -1.5924 2.2582 8 6 3.5194 -3.0176 2.1365 9 7 2.0517 -2.9847 2.1744 10 6 1.5258 -4.2693 2.1979 11 6 0.6043 -4.6654 1.2218 12 7 0.0991 -5.8862 1.2380 13 6 0.4593 -6.7428 2.1745 14 6 1.3848 -6.3561 3.1609 15 6 1.7736 -7.2694 4.1663 16 1 1.2888 -8.2319 4.2382 17 6 2.7874 -6.9268 5.0696 18 7 3.2875 -5.7189 5.0636 19 14 3.4252 -8.1955 6.2832 20 1 4.6336 -8.8525 5.7233 21 1 3.7735 -7.5260 7.5622 22 1 2.3756 -9.2168 6.5289 23 7 1.9000 -5.1192 3.1393 24 6 1.5086 -2.2143 1.0484 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0710 28 1 3.0829 1.3431 -0.0708 29 1 1.5898 1.9164 -0.8523 30 1 1.7044 1.8723 0.9234 31 1 3.8756 -1.1535 0.1561 32 1 3.8782 0.2818 1.2098 33 1 5.1564 -1.6147 2.2139 34 1 3.7500 -1.1606 3.2073 35 1 3.8906 -3.6211 2.9648 36 1 3.8487 -3.4536 1.1933 37 1 0.3042 -3.9698 0.4521 38 1 0.0436 -7.7396 2.1843 39 1 3.9895 -5.4814 5.6895 40 1 0.4195 -2.2344 1.0863 41 1 1.8475 -2.6542 0.1104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165034264.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:10 Heat of formation + Delta-G solvation = 42.972991 kcal Electronic energy + Delta-G solvation = -22016.067163 eV Core-core repulsion = 18930.323683 eV Total energy + Delta-G solvation = -3085.743480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53745 -39.98915 -37.60251 -35.92658 -34.46918 -33.48890 -31.21209 -30.70643 -28.70709 -27.85081 -25.65454 -25.32188 -24.06139 -22.82161 -22.05898 -20.69647 -19.47781 -18.26021 -17.48922 -16.99068 -16.75670 -16.20060 -15.79121 -15.74176 -15.65770 -15.56029 -14.76515 -14.71588 -14.31732 -13.96945 -13.72032 -13.35809 -13.25693 -13.09685 -12.99292 -12.67659 -12.52043 -12.43497 -12.34590 -12.03622 -11.90624 -11.73574 -11.55649 -11.41264 -11.30510 -11.10302 -10.27251 -9.44017 -9.32128 -8.86390 -8.33726 -6.67921 0.61713 1.10261 1.42136 1.53785 1.57211 2.19765 2.49831 2.77036 3.15511 3.62856 3.78602 3.83877 4.02828 4.05154 4.15930 4.27900 4.30793 4.34108 4.41268 4.49889 4.56640 4.65331 4.68260 4.70003 4.76087 4.82089 4.89775 4.98239 5.01576 5.04554 5.09501 5.13184 5.15526 5.23683 5.36831 5.60791 5.85927 6.03582 6.09013 6.13272 6.24304 6.57395 6.76449 7.33886 7.93665 8.31192 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.004974 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.960682 B = 5628.181675 C = 6505.145232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.551 5.551 3 C 0.023 3.977 4 C 0.096 3.904 5 H 0.040 0.960 6 C -0.107 4.107 7 C -0.105 4.105 8 C 0.072 3.928 9 N -0.478 5.478 10 C 0.286 3.714 11 C -0.170 4.170 12 N -0.425 5.425 13 C -0.108 4.108 14 C 0.196 3.804 15 C -0.434 4.434 16 H 0.104 0.896 17 C 0.023 3.977 18 N -0.736 5.736 19 Si 0.994 3.006 20 H -0.263 1.263 21 H -0.268 1.268 22 H -0.251 1.251 23 N -0.494 5.494 24 C 0.073 3.927 25 H 0.025 0.975 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.022 0.978 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.284 0.716 40 H 0.073 0.927 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 11.513 -4.234 12.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.276 5.276 3 C -0.125 4.125 4 C -0.013 4.013 5 H 0.058 0.942 6 C -0.144 4.144 7 C -0.143 4.143 8 C -0.054 4.054 9 N -0.196 5.196 10 C 0.043 3.957 11 C -0.331 4.331 12 N -0.137 5.137 13 C -0.277 4.277 14 C 0.069 3.931 15 C -0.466 4.466 16 H 0.122 0.878 17 C -0.201 4.201 18 N -0.357 5.357 19 Si 0.814 3.186 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.175 1.175 23 N -0.216 5.216 24 C -0.055 4.055 25 H 0.044 0.956 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.353 11.761 -4.167 12.920 hybrid contribution -0.232 -0.650 0.620 0.928 sum 3.120 11.111 -3.547 12.074 Atomic orbital electron populations 1.22478 0.86967 1.02311 1.01155 1.61966 1.08457 1.14952 1.42175 1.22499 1.01665 0.87266 1.01069 1.21511 0.96100 0.91766 0.91875 0.94202 1.21678 0.92925 1.01180 0.98631 1.21596 1.00943 0.92463 0.99305 1.22067 0.84080 0.99202 1.00026 1.58207 1.08424 1.10257 1.42737 1.21034 0.93706 0.90119 0.90847 1.22986 1.09906 0.95919 1.04274 1.67561 1.20907 1.02703 1.22497 1.23266 1.06082 1.00296 0.98096 1.19702 0.89751 0.90282 0.93409 1.20100 1.15792 1.01288 1.09374 0.87823 1.27106 0.95699 0.98002 0.99300 1.70193 1.17262 1.19633 1.28611 0.85007 0.79236 0.77870 0.76528 1.18750 1.19224 1.17457 1.69171 1.28896 1.02469 1.21084 1.22153 0.99565 0.93369 0.90422 0.95613 0.89501 0.92141 0.90130 0.90003 0.95505 0.91256 0.89064 0.88847 0.91561 0.91284 0.95941 0.83457 0.83523 0.90494 0.90897 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.21 127.69 1.18 1.59 16 2 N -0.55 -12.76 4.89 -922.94 -4.51 -17.27 16 3 C 0.02 0.39 9.11 127.69 1.16 1.55 16 4 C 0.10 2.63 2.10 44.97 0.09 2.72 16 5 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 6 C -0.11 -2.54 4.83 30.67 0.15 -2.39 16 7 C -0.10 -2.92 6.11 30.69 0.19 -2.73 16 8 C 0.07 2.79 5.34 86.37 0.46 3.25 16 9 N -0.48 -20.18 4.73 -701.17 -3.31 -23.49 16 10 C 0.29 14.51 6.46 133.38 0.86 15.37 16 11 C -0.17 -8.43 10.00 85.07 0.85 -7.58 16 12 N -0.42 -22.26 10.47 -192.23 -2.01 -24.27 16 13 C -0.11 -5.73 10.97 85.28 0.94 -4.79 16 14 C 0.20 10.99 6.54 40.15 0.26 11.25 16 15 C -0.43 -22.77 9.15 23.46 0.21 -22.56 16 16 H 0.10 4.96 7.86 -2.91 -0.02 4.94 16 17 C 0.02 1.12 5.49 85.30 0.47 1.59 16 18 N -0.74 -38.02 11.51 21.84 0.25 -37.77 16 19 Si 0.99 36.05 29.56 68.60 2.03 38.08 16 20 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 21 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 22 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 23 N -0.49 -27.78 7.34 -186.00 -1.37 -29.15 16 24 C 0.07 2.50 3.16 86.33 0.27 2.77 16 25 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.09 1.51 8.12 -2.39 -0.02 1.49 16 27 H 0.06 1.46 6.33 -2.38 -0.02 1.45 16 28 H 0.08 1.24 6.29 -2.38 -0.02 1.22 16 29 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 30 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 1.70 6.50 -2.39 -0.02 1.68 16 33 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 3.15 7.59 -2.39 -0.02 3.14 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.15 6.48 5.78 -2.91 -0.02 6.46 16 38 H 0.15 7.02 8.06 -2.91 -0.02 6.99 16 39 H 0.28 13.15 8.29 -92.71 -0.77 12.38 16 40 H 0.07 2.58 5.28 -2.39 -0.01 2.57 16 41 H 0.04 1.53 7.72 -2.39 -0.02 1.51 16 Total: -1.00 -64.52 321.22 -0.81 -65.33 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 1.02 Total: 28.49 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 7.10 Total: 0.05 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -10.95 Total: -131.95 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Total: -64.52 -0.81 -65.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165034264.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.300 kcal (2) G-P(sol) polarization free energy of solvation -64.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds