Wall clock time and date at job start Mon Mar 30 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00180 * 2 1 4 4 C 1.46903 * 111.00081 * 123.94995 * 2 1 3 5 5 H 1.09002 * 109.49771 * 54.92198 * 4 2 1 6 6 C 1.53113 * 109.50825 * 175.00075 * 4 2 1 7 7 C 1.53118 * 109.16347 * 177.59806 * 6 4 2 8 8 C 1.53038 * 109.27595 * 302.34387 * 7 6 4 9 9 N 1.46846 * 109.51423 * 59.18689 * 8 7 6 10 10 C 1.38832 * 111.00181 * 174.15273 * 9 8 7 11 11 C 1.39955 * 119.97088 * 235.76897 * 10 9 8 12 12 N 1.32135 * 120.31586 * 179.74707 * 11 10 9 13 13 C 1.31921 * 120.27002 * 0.52976 * 12 11 10 14 14 C 1.40679 * 119.93799 * 359.72991 * 13 12 11 15 15 C 1.41280 * 120.15957 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99852 * 353.81513 * 15 14 13 17 17 C 1.40052 * 119.99945 * 173.81303 * 15 14 13 18 18 N 1.30734 * 120.00350 * 6.31966 * 17 15 14 19 19 Si 1.86797 * 119.99796 * 186.31887 * 17 15 14 20 20 H 1.48498 * 109.47451 * 90.00048 * 19 17 15 21 21 H 1.48498 * 109.47182 * 210.00018 * 19 17 15 22 22 H 1.48499 * 109.47142 * 329.99975 * 19 17 15 23 23 N 1.32240 * 119.96638 * 56.04473 * 10 9 8 24 24 C 1.46847 * 111.19714 * 298.23929 * 9 8 7 25 25 H 1.09002 * 109.47154 * 296.05084 * 1 2 3 26 26 H 1.09001 * 109.46813 * 56.04838 * 1 2 3 27 27 H 1.08995 * 109.46969 * 176.04824 * 1 2 3 28 28 H 1.09001 * 109.47552 * 183.95116 * 3 2 1 29 29 H 1.09002 * 109.46778 * 303.95139 * 3 2 1 30 30 H 1.09003 * 109.47374 * 63.94669 * 3 2 1 31 31 H 1.09007 * 109.52273 * 57.69084 * 6 4 2 32 32 H 1.09004 * 109.57558 * 297.53461 * 6 4 2 33 33 H 1.08998 * 109.50112 * 182.40926 * 7 6 4 34 34 H 1.08994 * 109.53368 * 62.30799 * 7 6 4 35 35 H 1.08998 * 109.46330 * 179.19411 * 8 7 6 36 36 H 1.08997 * 109.46511 * 299.17472 * 8 7 6 37 37 H 1.08000 * 119.83877 * 0.02562 * 11 10 9 38 38 H 1.08004 * 120.03420 * 179.74732 * 13 12 11 39 39 H 0.96995 * 120.00049 * 180.02562 * 18 17 15 40 40 H 1.09006 * 109.47097 * 301.74140 * 24 9 8 41 41 H 1.09003 * 109.45384 * 181.76694 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1377 5 1 1.5746 -1.7713 1.1253 6 6 3.5210 -0.8491 1.0360 7 6 4.0660 -1.5967 2.2560 8 6 3.6241 -0.8739 3.5304 9 7 2.1575 -0.8214 3.5811 10 6 1.7200 -0.2889 4.7864 11 6 0.8335 -1.0144 5.5904 12 7 0.4166 -0.5163 6.7411 13 6 0.8245 0.6741 7.1372 14 6 1.7114 1.4151 6.3351 15 6 2.1508 2.6907 6.7545 16 1 1.7307 3.1420 7.6412 17 6 3.1314 3.3698 6.0205 18 7 3.5509 2.8822 4.8824 19 14 3.8397 4.9726 6.6677 20 1 5.0260 4.6840 7.5130 21 1 4.2429 5.8323 5.5260 22 1 2.8133 5.6757 7.4785 23 7 2.1371 0.9056 5.1709 24 6 1.6135 -0.0672 2.4446 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0828 1.3433 -0.0708 29 1 1.5899 1.9163 -0.8525 30 1 1.7044 1.8724 0.9232 31 1 3.9396 0.1570 1.0083 32 1 3.7978 -1.3839 0.1274 33 1 5.1548 -1.6218 2.2108 34 1 3.6784 -2.6154 2.2623 35 1 3.9985 -1.4117 4.4014 36 1 4.0240 0.1401 3.5302 37 1 0.4919 -1.9879 5.2709 38 1 0.4782 1.0793 8.0766 39 1 4.2303 3.3524 4.3743 40 1 2.0230 0.9430 2.4495 41 1 0.5277 -0.0193 2.5270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165034265.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:17 Heat of formation + Delta-G solvation = 58.110887 kcal Electronic energy + Delta-G solvation = -22415.848045 eV Core-core repulsion = 19330.760994 eV Total energy + Delta-G solvation = -3085.087051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.82462 -38.55648 -36.04667 -34.09807 -33.01142 -31.37622 -29.42388 -29.07050 -27.50327 -26.13417 -24.28722 -24.13225 -22.29356 -21.42809 -20.61623 -18.89714 -17.67995 -16.62988 -15.57328 -15.24665 -15.18542 -14.94013 -14.85434 -14.45819 -14.07398 -13.68047 -13.33022 -13.11748 -12.80203 -12.47631 -12.27759 -11.82697 -11.65083 -11.61564 -11.56924 -11.47888 -11.40977 -10.87666 -10.84626 -10.55209 -10.36842 -10.23257 -10.08304 -9.86951 -9.59191 -9.04148 -8.34300 -7.95891 -7.76670 -7.40227 -6.57153 -4.75827 2.39469 2.85779 2.96418 2.99239 3.12905 3.77608 4.05888 4.52169 4.54701 5.04817 5.19895 5.26615 5.41266 5.52007 5.53785 5.64210 5.69392 5.78608 5.78930 5.86275 5.93206 5.99669 6.02741 6.09629 6.16344 6.23604 6.27544 6.33220 6.39795 6.52233 6.54225 6.77910 6.79182 6.90980 7.11460 7.16357 7.18620 7.47817 7.62697 7.83811 8.06888 8.40219 8.67548 9.18871 9.74472 10.04579 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.006557 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.302217 B = 4268.983279 C = 4997.759093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.538 5.538 3 C 0.014 3.986 4 C 0.087 3.913 5 H 0.087 0.913 6 C -0.110 4.110 7 C -0.113 4.113 8 C 0.062 3.938 9 N -0.474 5.474 10 C 0.265 3.735 11 C -0.087 4.087 12 N -0.427 5.427 13 C -0.069 4.069 14 C 0.217 3.783 15 C -0.416 4.416 16 H 0.090 0.910 17 C 0.068 3.932 18 N -0.713 5.713 19 Si 0.911 3.089 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.259 1.259 23 N -0.475 5.475 24 C 0.037 3.963 25 H 0.030 0.970 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.274 0.726 40 H 0.055 0.945 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 -2.128 -8.515 8.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.260 5.260 3 C -0.134 4.134 4 C -0.021 4.021 5 H 0.105 0.895 6 C -0.148 4.148 7 C -0.152 4.152 8 C -0.065 4.065 9 N -0.198 5.198 10 C 0.026 3.974 11 C -0.247 4.247 12 N -0.139 5.139 13 C -0.239 4.239 14 C 0.089 3.911 15 C -0.448 4.448 16 H 0.108 0.892 17 C -0.158 4.158 18 N -0.334 5.334 19 Si 0.735 3.265 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.183 1.183 23 N -0.195 5.195 24 C -0.093 4.093 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.277 -2.803 -9.205 9.707 hybrid contribution 0.346 1.984 1.096 2.293 sum 1.623 -0.819 -8.109 8.310 Atomic orbital electron populations 1.22394 0.87808 1.02086 1.00518 1.62399 1.07727 1.14047 1.41872 1.22483 1.01022 0.89197 1.00687 1.21763 0.95540 0.97617 0.87225 0.89514 1.21619 0.94229 1.00879 0.98024 1.21576 0.99692 0.99720 0.94186 1.21991 0.86962 1.00578 0.97014 1.60089 1.09579 1.50210 0.99918 1.20800 0.94023 0.91123 0.91408 1.22288 1.06024 1.02003 0.94411 1.67722 1.20463 1.12151 1.13607 1.23145 1.04966 0.93512 1.02230 1.19255 0.89764 0.93961 0.88110 1.19628 1.16937 0.99276 1.08976 0.89189 1.26110 0.96161 0.99303 0.94209 1.70078 1.19359 1.34895 1.09020 0.86253 0.80034 0.80760 0.79451 1.19204 1.20070 1.18320 1.69475 1.25069 1.09444 1.15563 1.22639 0.99466 0.96867 0.90280 0.95117 0.91780 0.91425 0.91122 0.91991 0.94568 0.91929 0.91584 0.91675 0.91483 0.91773 0.92303 0.85179 0.84928 0.91441 0.92666 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.31 60.06 0.56 0.82 16 2 N -0.54 -7.55 5.01 -243.08 -1.22 -8.77 16 3 C 0.01 0.20 8.82 60.07 0.53 0.73 16 4 C 0.09 1.33 2.39 -67.63 -0.16 1.16 16 5 H 0.09 1.32 8.13 -51.93 -0.42 0.90 16 6 C -0.11 -1.55 5.14 -26.61 -0.14 -1.69 16 7 C -0.11 -1.65 6.09 -26.65 -0.16 -1.82 16 8 C 0.06 1.17 5.20 -3.83 -0.02 1.15 16 9 N -0.47 -9.62 4.62 -173.06 -0.80 -10.42 16 10 C 0.27 6.37 5.31 -155.01 -0.82 5.54 16 11 C -0.09 -2.09 11.17 -16.78 -0.19 -2.28 16 12 N -0.43 -10.69 10.47 -12.11 -0.13 -10.82 16 13 C -0.07 -1.74 10.97 -16.59 -0.18 -1.92 16 14 C 0.22 5.76 6.54 -84.83 -0.55 5.21 16 15 C -0.42 -10.56 9.15 -37.75 -0.35 -10.90 16 16 H 0.09 2.11 7.85 -52.49 -0.41 1.70 16 17 C 0.07 1.64 5.49 -17.34 -0.10 1.54 16 18 N -0.71 -17.73 11.51 55.55 0.64 -17.09 16 19 Si 0.91 17.68 29.56 -169.99 -5.03 12.66 16 20 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 23 N -0.47 -12.44 7.46 -10.14 -0.08 -12.51 16 24 C 0.04 0.68 3.92 -3.83 -0.02 0.67 16 25 H 0.03 0.43 6.46 -51.93 -0.34 0.10 16 26 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.95 6.28 -51.93 -0.33 0.62 16 29 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 30 H 0.04 0.58 6.26 -51.93 -0.33 0.25 16 31 H 0.06 0.93 6.32 -51.93 -0.33 0.61 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.06 1.27 7.95 -51.93 -0.41 0.86 16 37 H 0.13 2.86 8.06 -52.49 -0.42 2.43 16 38 H 0.13 3.01 8.06 -52.48 -0.42 2.59 16 39 H 0.27 6.23 8.29 -40.82 -0.34 5.89 16 40 H 0.06 1.18 6.32 -51.93 -0.33 0.85 16 41 H 0.06 1.24 6.53 -51.93 -0.34 0.90 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -27.64 322.88 -9.50 -37.14 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.16 Total: 6.73 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.59 Total: -1.78 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -1.58 Total: -59.61 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.64 -9.50 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165034265.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.250 kcal (2) G-P(sol) polarization free energy of solvation -27.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds