Wall clock time and date at job start Mon Mar 30 2020 02:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00180 * 2 1 4 4 C 1.46903 * 111.00081 * 123.94995 * 2 1 3 5 5 H 1.09002 * 109.49771 * 54.92198 * 4 2 1 6 6 C 1.53113 * 109.50825 * 175.00075 * 4 2 1 7 7 C 1.53118 * 109.16347 * 177.59806 * 6 4 2 8 8 C 1.53038 * 109.27595 * 302.34387 * 7 6 4 9 9 N 1.46846 * 109.51423 * 59.18689 * 8 7 6 10 10 C 1.38832 * 111.00181 * 174.15273 * 9 8 7 11 11 C 1.39955 * 119.97088 * 235.76897 * 10 9 8 12 12 N 1.32135 * 120.31586 * 179.74707 * 11 10 9 13 13 C 1.31921 * 120.27002 * 0.52976 * 12 11 10 14 14 C 1.40679 * 119.93799 * 359.72991 * 13 12 11 15 15 C 1.41280 * 120.15957 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99852 * 353.81513 * 15 14 13 17 17 C 1.40052 * 119.99945 * 173.81303 * 15 14 13 18 18 N 1.30734 * 120.00350 * 6.31966 * 17 15 14 19 19 Si 1.86797 * 119.99796 * 186.31887 * 17 15 14 20 20 H 1.48498 * 109.47451 * 90.00048 * 19 17 15 21 21 H 1.48498 * 109.47182 * 210.00018 * 19 17 15 22 22 H 1.48499 * 109.47142 * 329.99975 * 19 17 15 23 23 N 1.32240 * 119.96638 * 56.04473 * 10 9 8 24 24 C 1.46847 * 111.19714 * 298.23929 * 9 8 7 25 25 H 1.09002 * 109.47154 * 296.05084 * 1 2 3 26 26 H 1.09001 * 109.46813 * 56.04838 * 1 2 3 27 27 H 1.08995 * 109.46969 * 176.04824 * 1 2 3 28 28 H 1.09001 * 109.47552 * 183.95116 * 3 2 1 29 29 H 1.09002 * 109.46778 * 303.95139 * 3 2 1 30 30 H 1.09003 * 109.47374 * 63.94669 * 3 2 1 31 31 H 1.09007 * 109.52273 * 57.69084 * 6 4 2 32 32 H 1.09004 * 109.57558 * 297.53461 * 6 4 2 33 33 H 1.08998 * 109.50112 * 182.40926 * 7 6 4 34 34 H 1.08994 * 109.53368 * 62.30799 * 7 6 4 35 35 H 1.08998 * 109.46330 * 179.19411 * 8 7 6 36 36 H 1.08997 * 109.46511 * 299.17472 * 8 7 6 37 37 H 1.08000 * 119.83877 * 0.02562 * 11 10 9 38 38 H 1.08004 * 120.03420 * 179.74732 * 13 12 11 39 39 H 0.96995 * 120.00049 * 180.02562 * 18 17 15 40 40 H 1.09006 * 109.47097 * 301.74140 * 24 9 8 41 41 H 1.09003 * 109.45384 * 181.76694 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1377 5 1 1.5746 -1.7713 1.1253 6 6 3.5210 -0.8491 1.0360 7 6 4.0660 -1.5967 2.2560 8 6 3.6241 -0.8739 3.5304 9 7 2.1575 -0.8214 3.5811 10 6 1.7200 -0.2889 4.7864 11 6 0.8335 -1.0144 5.5904 12 7 0.4166 -0.5163 6.7411 13 6 0.8245 0.6741 7.1372 14 6 1.7114 1.4151 6.3351 15 6 2.1508 2.6907 6.7545 16 1 1.7307 3.1420 7.6412 17 6 3.1314 3.3698 6.0205 18 7 3.5509 2.8822 4.8824 19 14 3.8397 4.9726 6.6677 20 1 5.0260 4.6840 7.5130 21 1 4.2429 5.8323 5.5260 22 1 2.8133 5.6757 7.4785 23 7 2.1371 0.9056 5.1709 24 6 1.6135 -0.0672 2.4446 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0828 1.3433 -0.0708 29 1 1.5899 1.9163 -0.8525 30 1 1.7044 1.8724 0.9232 31 1 3.9396 0.1570 1.0083 32 1 3.7978 -1.3839 0.1274 33 1 5.1548 -1.6218 2.2108 34 1 3.6784 -2.6154 2.2623 35 1 3.9985 -1.4117 4.4014 36 1 4.0240 0.1401 3.5302 37 1 0.4919 -1.9879 5.2709 38 1 0.4782 1.0793 8.0766 39 1 4.2303 3.3524 4.3743 40 1 2.0230 0.9430 2.4495 41 1 0.5277 -0.0193 2.5270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165034265.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:13 Heat of formation + Delta-G solvation = 39.600039 kcal Electronic energy + Delta-G solvation = -22416.650736 eV Core-core repulsion = 19330.760994 eV Total energy + Delta-G solvation = -3085.889742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 3.42 seconds Orbital eigenvalues (eV) -41.47705 -40.14568 -37.47189 -35.97689 -34.51926 -33.21766 -31.06727 -30.57601 -28.61971 -28.03147 -25.81611 -25.48051 -24.13936 -22.98305 -22.13652 -20.25329 -19.53053 -18.32031 -17.24630 -17.10477 -16.72951 -16.59692 -16.15247 -15.71835 -15.50463 -15.07297 -14.88648 -14.78283 -14.30258 -13.85529 -13.72130 -13.39956 -13.33848 -13.07143 -12.95783 -12.87215 -12.71191 -12.58802 -12.13892 -12.11012 -11.74409 -11.68488 -11.57699 -11.49588 -11.37923 -10.90811 -9.98588 -9.70429 -9.29101 -9.25243 -8.42561 -6.71346 0.49910 1.01073 1.36201 1.48026 1.50432 2.13446 2.68132 2.73474 3.07599 3.64808 3.77877 3.90961 4.03450 4.06901 4.17222 4.20113 4.30937 4.34942 4.42038 4.48176 4.55502 4.59567 4.65535 4.79422 4.86197 4.89549 4.92672 4.97966 5.00071 5.04372 5.06150 5.13379 5.18301 5.30032 5.43180 5.60385 5.86321 5.94817 6.02580 6.14373 6.19326 6.50898 6.76445 7.24264 7.80870 8.23329 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.006557 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.302217 B = 4268.983279 C = 4997.759093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.531 5.531 3 C 0.018 3.982 4 C 0.096 3.904 5 H 0.096 0.904 6 C -0.104 4.104 7 C -0.102 4.102 8 C 0.067 3.933 9 N -0.468 5.468 10 C 0.260 3.740 11 C -0.100 4.100 12 N -0.434 5.434 13 C -0.087 4.087 14 C 0.184 3.816 15 C -0.438 4.438 16 H 0.102 0.898 17 C 0.024 3.976 18 N -0.741 5.741 19 Si 0.991 3.009 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.251 1.251 23 N -0.496 5.496 24 C 0.049 3.951 25 H 0.009 0.991 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.005 0.995 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.025 0.975 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.282 0.718 40 H 0.023 0.977 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 -2.157 -9.893 10.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.253 5.253 3 C -0.130 4.130 4 C -0.013 4.013 5 H 0.114 0.886 6 C -0.142 4.142 7 C -0.140 4.140 8 C -0.061 4.061 9 N -0.192 5.192 10 C 0.020 3.980 11 C -0.260 4.260 12 N -0.146 5.146 13 C -0.256 4.256 14 C 0.057 3.943 15 C -0.469 4.469 16 H 0.120 0.880 17 C -0.199 4.199 18 N -0.362 5.362 19 Si 0.811 3.189 20 H -0.187 1.187 21 H -0.193 1.193 22 H -0.174 1.174 23 N -0.217 5.217 24 C -0.080 4.080 25 H 0.028 0.972 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.092 0.908 40 H 0.041 0.959 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.038 -2.847 -10.586 11.150 hybrid contribution 0.076 1.977 1.492 2.478 sum 2.114 -0.870 -9.094 9.377 Atomic orbital electron populations 1.22476 0.86961 1.03144 1.00305 1.62485 1.08496 1.13892 1.40476 1.22478 1.01433 0.89080 1.00008 1.21742 0.96625 0.97556 0.85369 0.88600 1.21600 0.93027 1.00678 0.98882 1.21544 1.01137 0.99663 0.91647 1.21988 0.85790 0.99113 0.99185 1.60219 1.10451 1.49498 0.99018 1.21222 0.93578 0.90583 0.92603 1.22638 1.06204 1.02800 0.94371 1.67725 1.20619 1.12173 1.14085 1.23379 1.05399 0.93775 1.03003 1.19737 0.90680 0.95093 0.88800 1.20058 1.17706 0.99374 1.09767 0.87988 1.27066 0.95915 1.02828 0.94112 1.70172 1.19556 1.36433 1.10048 0.85057 0.79169 0.75821 0.78876 1.18702 1.19325 1.17440 1.69507 1.25895 1.10483 1.15830 1.22580 0.98106 0.95631 0.91667 0.97225 0.89785 0.90096 0.90711 0.89856 0.97618 0.92963 0.88803 0.89391 0.89971 0.93053 0.95679 0.83278 0.83250 0.90766 0.95918 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.31 127.69 1.19 1.65 16 2 N -0.53 -14.06 5.01 -922.96 -4.62 -18.68 16 3 C 0.02 0.49 8.82 127.69 1.13 1.61 16 4 C 0.10 2.80 2.39 44.97 0.11 2.90 16 5 H 0.10 2.68 8.13 -2.39 -0.02 2.66 16 6 C -0.10 -2.72 5.14 30.67 0.16 -2.57 16 7 C -0.10 -2.77 6.09 30.65 0.19 -2.58 16 8 C 0.07 2.55 5.20 86.33 0.45 3.00 16 9 N -0.47 -19.33 4.62 -701.45 -3.24 -22.57 16 10 C 0.26 12.85 5.31 133.37 0.71 13.56 16 11 C -0.10 -4.89 11.17 85.06 0.95 -3.94 16 12 N -0.43 -22.13 10.47 -192.24 -2.01 -24.14 16 13 C -0.09 -4.49 10.97 85.28 0.94 -3.56 16 14 C 0.18 10.12 6.54 40.15 0.26 10.38 16 15 C -0.44 -22.64 9.15 23.46 0.21 -22.42 16 16 H 0.10 4.83 7.85 -2.91 -0.02 4.81 16 17 C 0.02 1.18 5.49 85.30 0.47 1.64 16 18 N -0.74 -37.80 11.51 21.84 0.25 -37.54 16 19 Si 0.99 35.98 29.56 68.60 2.03 38.01 16 20 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 21 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 22 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 23 N -0.50 -27.04 7.46 -185.99 -1.39 -28.43 16 24 C 0.05 1.89 3.92 86.33 0.34 2.23 16 25 H 0.01 0.26 6.46 -2.39 -0.02 0.25 16 26 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.93 6.28 -2.39 -0.01 1.92 16 29 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 30 H 0.01 0.17 6.26 -2.39 -0.01 0.16 16 31 H 0.05 1.49 6.32 -2.38 -0.02 1.48 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 35 H 0.05 2.05 8.10 -2.39 -0.02 2.04 16 36 H 0.02 1.12 7.95 -2.39 -0.02 1.10 16 37 H 0.15 6.56 8.06 -2.91 -0.02 6.53 16 38 H 0.15 6.93 8.06 -2.91 -0.02 6.91 16 39 H 0.28 13.02 8.29 -92.71 -0.77 12.26 16 40 H 0.02 1.02 6.32 -2.38 -0.02 1.00 16 41 H 0.05 1.92 6.53 -2.39 -0.02 1.90 16 Total: -1.00 -61.53 322.88 -0.88 -62.41 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 1.02 Total: 29.03 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 7.09 Total: 1.92 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -11.01 Total: -131.37 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.03 Total: 38.01 kcal Total: -61.53 -0.88 -62.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165034265.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.011 kcal (2) G-P(sol) polarization free energy of solvation -61.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds