Wall clock time and date at job start Mon Mar 30 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38008 * 120.30276 * 2 1 4 4 N 1.32051 * 120.98902 * 180.02562 * 3 2 1 5 5 C 1.32258 * 121.69425 * 359.97438 * 4 3 2 6 6 N 1.39289 * 119.73936 * 180.02562 * 5 4 3 7 7 C 1.46951 * 111.00374 * 58.88573 * 6 5 4 8 8 C 1.53052 * 109.36658 * 176.81389 * 7 6 5 9 9 N 1.46956 * 109.36733 * 58.39662 * 8 7 6 10 10 C 1.46895 * 111.00133 * 176.81538 * 9 8 7 11 11 C 1.50698 * 109.47296 * 59.31700 * 10 9 8 12 12 H 1.08002 * 120.00252 * 355.18629 * 11 10 9 13 13 C 1.37879 * 120.00225 * 175.18690 * 11 10 9 14 14 N 1.31516 * 120.00002 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99848 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47517 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46926 * 120.00026 * 15 13 11 18 18 H 1.48506 * 109.46736 * 239.99473 * 15 13 11 19 19 C 1.46959 * 110.88073 * 300.68246 * 9 8 7 20 20 C 1.46956 * 110.99989 * 295.08203 * 6 5 4 21 21 C 1.39715 * 120.51785 * 0.02562 * 5 4 3 22 22 N 1.40000 * 120.51530 * 179.97438 * 21 5 4 23 23 C 1.38833 * 120.30690 * 179.72676 * 2 1 3 24 24 H 1.09001 * 109.47001 * 89.99781 * 1 2 3 25 25 H 1.09002 * 109.47169 * 209.99849 * 1 2 3 26 26 H 1.08998 * 109.47377 * 329.99875 * 1 2 3 27 27 H 1.07996 * 119.50916 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.48351 * 296.77476 * 7 6 5 29 29 H 1.08996 * 109.49525 * 56.84157 * 7 6 5 30 30 H 1.09002 * 109.48639 * 298.43246 * 8 7 6 31 31 H 1.09002 * 109.49248 * 178.36678 * 8 7 6 32 32 H 1.09001 * 109.47097 * 179.31643 * 10 9 8 33 33 H 1.08996 * 109.47197 * 299.32028 * 10 9 8 34 34 H 0.97000 * 119.99962 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.48574 * 299.35490 * 19 9 8 36 36 H 1.08996 * 109.49436 * 179.28727 * 19 9 8 37 37 H 1.09010 * 109.48707 * 303.15866 * 20 6 5 38 38 H 1.08992 * 109.48936 * 63.20106 * 20 6 5 39 39 H 0.96993 * 120.00238 * 5.02683 * 22 21 5 40 40 H 0.97002 * 119.99975 * 185.02905 * 22 21 5 41 41 H 1.07993 * 120.78291 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2034 1.1915 0.0000 4 7 3.5238 1.2073 -0.0005 5 6 4.2321 0.0904 -0.0005 6 7 5.6235 0.1546 -0.0005 7 6 6.1170 0.8870 1.1740 8 6 7.6474 0.8666 1.1787 9 7 8.1466 1.4719 -0.0639 10 6 9.6140 1.5395 -0.0639 11 6 10.1810 0.1501 0.0746 12 1 9.5203 -0.6895 0.2328 13 6 11.5432 -0.0493 -0.0004 14 7 12.3478 0.9729 -0.1935 15 14 12.2458 -1.7717 0.1707 16 1 11.1389 -2.7395 0.3786 17 1 12.9898 -2.1277 -1.0643 18 1 13.1675 -1.8169 1.3342 19 6 7.6532 0.7394 -1.2384 20 6 6.1228 0.7599 -1.2431 21 6 3.5956 -1.1533 -0.0005 22 7 4.3454 -2.3356 -0.0011 23 6 2.2076 -1.1986 0.0057 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6603 2.1250 -0.0004 28 1 5.7672 1.9186 1.1326 29 1 5.7442 0.4124 2.0817 30 1 7.9971 -0.1635 1.2475 31 1 8.0161 1.4340 2.0333 32 1 9.9574 1.9803 -0.9998 33 1 9.9495 2.1537 0.7716 34 1 13.3061 0.8326 -0.2467 35 1 8.0029 -0.2922 -1.1970 36 1 8.0260 1.2139 -2.1461 37 1 5.7541 0.1924 -2.0977 38 1 5.7728 1.7897 -1.3121 39 1 5.3118 -2.2971 0.0721 40 1 3.8984 -3.1934 -0.0748 41 1 1.6856 -2.1439 0.0106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165057033.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:13 Heat of formation + Delta-G solvation = 27.813191 kcal Electronic energy + Delta-G solvation = -21616.099297 eV Core-core repulsion = 18529.698439 eV Total energy + Delta-G solvation = -3086.400858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61815 -39.73288 -36.80415 -35.90131 -34.61155 -33.48216 -31.85338 -30.23337 -29.61569 -27.60719 -26.09368 -24.47023 -24.36806 -23.37459 -22.20861 -20.69398 -18.64963 -18.38863 -18.11345 -17.21809 -16.79765 -16.27316 -16.08380 -15.81242 -15.65264 -15.31495 -14.88042 -14.78471 -14.47519 -13.91363 -13.81622 -13.56976 -13.51708 -13.34186 -12.94464 -12.76495 -12.70255 -12.49595 -12.28614 -12.19570 -12.02955 -11.80583 -11.76230 -11.46368 -10.60588 -10.54165 -10.01800 -9.61446 -9.02079 -8.47657 -8.14321 -6.34043 0.23787 0.59814 1.37303 1.38385 1.50504 2.38420 2.72158 2.87886 2.97977 3.10559 3.34177 3.78758 3.95505 4.04399 4.20902 4.23050 4.33447 4.34214 4.39548 4.46948 4.55013 4.68137 4.82259 4.84705 4.92214 4.98569 5.03874 5.09708 5.21795 5.23079 5.25570 5.33913 5.45442 5.70336 5.75453 5.86276 6.03698 6.18477 6.29532 6.50129 6.62059 6.86548 6.99009 7.20105 7.37493 8.88582 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.033573 B = 0.004048 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.799698 B = 6915.531176 C = 7413.194574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.084 4.084 3 C 0.025 3.975 4 N -0.494 5.494 5 C 0.180 3.820 6 N -0.476 5.476 7 C 0.082 3.918 8 C 0.071 3.929 9 N -0.545 5.545 10 C 0.201 3.799 11 C -0.553 4.553 12 H 0.060 0.940 13 C 0.010 3.990 14 N -0.928 5.928 15 Si 0.960 3.040 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.072 3.928 20 C 0.083 3.917 21 C 0.201 3.799 22 N -0.851 5.851 23 C -0.166 4.166 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.163 0.837 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.065 0.935 32 H 0.007 0.993 33 H 0.003 0.997 34 H 0.265 0.735 35 H 0.032 0.968 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.407 0.593 40 H 0.408 0.592 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.092 -6.811 0.313 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.087 4.087 3 C -0.136 4.136 4 N -0.204 5.204 5 C -0.054 4.054 6 N -0.200 5.200 7 C -0.046 4.046 8 C -0.058 4.058 9 N -0.269 5.269 10 C 0.074 3.926 11 C -0.592 4.592 12 H 0.078 0.922 13 C -0.189 4.189 14 N -0.568 5.568 15 Si 0.785 3.215 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.057 4.057 20 C -0.045 4.045 21 C 0.089 3.911 22 N -0.390 5.390 23 C -0.197 4.197 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.180 0.820 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.237 0.763 40 H 0.239 0.761 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -23.453 -5.945 0.293 24.197 hybrid contribution 1.032 -1.435 0.037 1.768 sum -22.421 -7.380 0.331 23.607 Atomic orbital electron populations 1.20785 0.87732 1.04197 1.03546 1.21019 0.98887 0.92568 0.96216 1.22508 0.88443 0.98832 1.03818 1.67500 1.10368 1.31913 1.10641 1.19454 0.89466 0.88283 1.08181 1.60148 1.04006 1.52430 1.03382 1.21996 0.93830 0.96478 0.92291 1.21916 0.93266 0.97890 0.92752 1.62585 1.10909 1.51017 1.02412 1.19394 0.82825 0.95002 0.95372 1.22004 0.92552 0.94906 1.49733 0.92159 1.25847 0.97614 1.00887 0.94557 1.70084 1.04040 1.32279 1.50413 0.85471 0.78381 0.79850 0.77753 1.18902 1.20458 1.20483 1.21894 0.93306 0.96834 0.93683 1.22005 0.93823 0.97508 0.91161 1.18530 0.91757 0.87070 0.93713 1.42439 1.09976 1.04523 1.82076 1.21198 0.90669 1.00074 1.07734 0.89741 0.90028 0.90177 0.82005 0.94374 0.90362 0.94874 0.91667 0.97511 0.97900 0.92647 0.94977 0.91722 0.90247 0.94546 0.76340 0.76105 0.82173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.03 71.24 0.71 -0.32 16 2 C -0.08 -1.52 5.89 -19.78 -0.12 -1.63 16 3 C 0.02 0.58 10.84 84.61 0.92 1.49 16 4 N -0.49 -15.00 9.65 -192.63 -1.86 -16.86 16 5 C 0.18 5.39 5.37 133.15 0.71 6.10 16 6 N -0.48 -15.69 3.88 -700.61 -2.72 -18.41 16 7 C 0.08 2.87 5.41 86.31 0.47 3.34 16 8 C 0.07 2.90 5.24 86.31 0.45 3.35 16 9 N -0.55 -24.91 4.92 -900.29 -4.43 -29.34 16 10 C 0.20 10.91 5.14 85.56 0.44 11.35 16 11 C -0.55 -30.97 7.67 25.60 0.20 -30.77 16 12 H 0.06 3.32 5.81 -2.91 -0.02 3.30 16 13 C 0.01 0.57 5.46 84.65 0.46 1.03 16 14 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 15 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 16 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 C 0.07 2.95 5.32 86.31 0.46 3.41 16 20 C 0.08 2.89 5.47 86.31 0.47 3.37 16 21 C 0.20 4.79 6.81 38.34 0.26 5.05 16 22 N -0.85 -16.83 9.08 -50.70 -0.46 -17.29 16 23 C -0.17 -3.06 9.72 22.56 0.22 -2.84 16 24 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 25 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 26 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 27 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 28 H 0.04 1.44 7.92 -2.39 -0.02 1.42 16 29 H 0.08 2.52 8.13 -2.39 -0.02 2.50 16 30 H 0.03 1.46 6.46 -2.39 -0.02 1.44 16 31 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.01 0.40 8.12 -2.39 -0.02 0.38 16 33 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 35 H 0.03 1.41 6.95 -2.39 -0.02 1.40 16 36 H 0.06 2.68 8.13 -2.39 -0.02 2.66 16 37 H 0.08 2.54 8.13 -2.38 -0.02 2.52 16 38 H 0.04 1.37 8.02 -2.39 -0.02 1.35 16 39 H 0.41 9.34 8.15 -92.71 -0.76 8.58 16 40 H 0.41 5.42 8.86 -92.71 -0.82 4.60 16 41 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -67.13 329.75 -2.03 -69.15 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -0.54 Total: 19.33 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 5.66 Total: 2.93 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -9.18 Total: -137.51 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -67.13 -2.03 -69.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165057033.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.966 kcal (2) G-P(sol) polarization free energy of solvation -67.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds