Wall clock time and date at job start Mon Mar 30 2020 02:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99506 * 2 1 4 4 C 1.46896 * 111.00589 * 123.95421 * 2 1 3 5 5 C 1.52999 * 109.47361 * 164.03658 * 4 2 1 6 6 H 1.09002 * 110.72371 * 51.38012 * 5 4 2 7 7 C 1.54938 * 110.66820 * 288.28872 * 5 4 2 8 8 C 1.54598 * 102.91796 * 204.14865 * 7 5 4 9 9 C 1.53994 * 105.14231 * 21.95516 * 8 7 5 10 10 N 1.47900 * 107.05680 * 1.22563 * 9 8 7 11 11 C 1.38824 * 110.99836 * 214.15897 * 10 9 8 12 12 C 1.39974 * 119.96496 * 243.61761 * 11 10 9 13 13 N 1.32126 * 120.31649 * 179.97438 * 12 11 10 14 14 C 1.31935 * 120.26994 * 0.02562 * 13 12 11 15 15 C 1.40674 * 119.93498 * 0.02562 * 14 13 12 16 16 C 1.41278 * 120.15654 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99885 * 7.75811 * 16 15 14 18 18 C 1.40055 * 119.99993 * 187.75264 * 16 15 14 19 19 N 1.30727 * 120.00247 * 7.76646 * 18 16 15 20 20 Si 1.86801 * 119.99696 * 187.75948 * 18 16 15 21 21 H 1.48500 * 109.47269 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46784 * 120.00382 * 20 18 16 23 23 H 1.48496 * 109.47120 * 240.00158 * 20 18 16 24 24 N 1.32232 * 119.97202 * 63.63354 * 11 10 9 25 25 H 1.08994 * 109.47097 * 296.03616 * 1 2 3 26 26 H 1.08995 * 109.47839 * 56.04738 * 1 2 3 27 27 H 1.09004 * 109.46735 * 176.04858 * 1 2 3 28 28 H 1.09005 * 109.47129 * 184.60738 * 3 2 1 29 29 H 1.08993 * 109.47591 * 304.60855 * 3 2 1 30 30 H 1.09005 * 109.47019 * 64.60918 * 3 2 1 31 31 H 1.08999 * 109.47063 * 44.03977 * 4 2 1 32 32 H 1.08997 * 109.47088 * 284.04053 * 4 2 1 33 33 H 1.09004 * 110.72648 * 85.79093 * 7 5 4 34 34 H 1.08997 * 110.87472 * 322.57588 * 7 5 4 35 35 H 1.09001 * 110.31025 * 263.03407 * 8 7 5 36 36 H 1.08998 * 110.30704 * 140.87726 * 8 7 5 37 37 H 1.08993 * 109.91623 * 241.86954 * 9 8 7 38 38 H 1.09005 * 109.91326 * 120.57683 * 9 8 7 39 39 H 1.08000 * 119.84332 * 359.71910 * 12 11 10 40 40 H 1.07999 * 120.02837 * 180.02562 * 14 13 12 41 41 H 0.97002 * 120.00175 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.4730 -1.0833 0.8985 6 1 4.0254 -0.1790 0.6431 7 6 3.6301 -2.1520 -0.2122 8 6 5.0048 -2.7831 0.1073 9 6 5.2520 -2.4762 1.5960 10 7 4.0673 -1.7415 2.0901 11 6 4.4273 -0.8040 3.0485 12 6 3.9561 -0.9292 4.3606 13 7 4.2948 -0.0412 5.2785 14 6 5.0801 0.9719 4.9659 15 6 5.5591 1.1089 3.6504 16 6 6.3998 2.1922 3.3104 17 1 6.7779 2.8454 4.0829 18 6 6.7430 2.4190 1.9716 19 7 6.1686 1.7265 1.0232 20 14 8.0216 3.7110 1.5412 21 1 8.5179 4.3503 2.7863 22 1 9.1553 3.0677 0.8297 23 1 7.4085 4.7417 0.6655 24 7 5.2148 0.2065 2.7211 25 1 -0.3633 0.4511 0.9233 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0819 1.3437 -0.0826 29 1 1.5806 1.9199 -0.8457 30 1 1.7141 1.8686 0.9284 31 1 1.4361 -1.6958 1.2395 32 1 1.8930 -0.1783 2.0498 33 1 3.6394 -1.6858 -1.1975 34 1 2.8386 -2.8985 -0.1477 35 1 5.7819 -2.3283 -0.5069 36 1 4.9738 -3.8602 -0.0569 37 1 6.1437 -1.8590 1.7047 38 1 5.3708 -3.4062 2.1521 39 1 3.3092 -1.7533 4.6230 40 1 5.3548 1.6952 5.7194 41 1 6.4066 1.8833 0.0960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165075590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:39 Heat of formation + Delta-G solvation = 59.098473 kcal Electronic energy + Delta-G solvation = -22552.170488 eV Core-core repulsion = 19467.126262 eV Total energy + Delta-G solvation = -3085.044226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.67948 -38.02181 -36.43212 -34.08355 -32.50152 -31.09134 -29.86220 -28.47116 -27.27448 -26.00126 -25.34999 -22.82910 -21.96116 -21.46299 -20.15815 -19.28746 -17.74714 -16.37759 -15.74494 -15.19482 -15.03672 -14.95625 -14.85217 -14.61898 -13.90921 -13.28937 -13.25362 -12.96032 -12.51075 -12.18325 -12.08893 -11.81820 -11.51510 -11.43941 -11.38067 -11.36780 -11.27879 -10.92647 -10.78243 -10.72988 -10.43205 -10.28319 -10.00657 -9.85489 -9.54633 -8.97830 -8.19450 -8.01942 -7.73740 -7.38564 -6.61495 -4.72677 2.40995 2.85220 2.98388 3.02300 3.13562 3.79072 4.10010 4.55108 4.79684 5.17333 5.27825 5.39127 5.43556 5.54685 5.63407 5.70240 5.79934 5.87705 5.95666 5.96474 6.02081 6.04732 6.13240 6.14838 6.27143 6.38553 6.40372 6.42171 6.48357 6.54854 6.69643 6.79688 6.92458 6.93172 7.16324 7.25972 7.35595 7.49013 7.54295 7.87260 8.09973 8.42032 8.69194 9.20257 9.75255 10.05287 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.013932 B = 0.007291 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.274350 B = 3839.510489 C = 4263.861540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.543 5.543 3 C 0.024 3.976 4 C 0.075 3.925 5 C 0.074 3.926 6 H 0.095 0.905 7 C -0.103 4.103 8 C -0.127 4.127 9 C 0.049 3.951 10 N -0.464 5.464 11 C 0.262 3.738 12 C -0.088 4.088 13 N -0.427 5.427 14 C -0.071 4.071 15 C 0.221 3.779 16 C -0.418 4.418 17 H 0.090 0.910 18 C 0.073 3.927 19 N -0.714 5.714 20 Si 0.909 3.091 21 H -0.259 1.259 22 H -0.272 1.272 23 H -0.272 1.272 24 N -0.477 5.477 25 H 0.021 0.979 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.021 0.979 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.252 -2.960 -5.853 7.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.267 5.267 3 C -0.124 4.124 4 C -0.053 4.053 5 C -0.033 4.033 6 H 0.113 0.887 7 C -0.141 4.141 8 C -0.165 4.165 9 C -0.078 4.078 10 N -0.188 5.188 11 C 0.023 3.977 12 C -0.248 4.248 13 N -0.139 5.139 14 C -0.240 4.240 15 C 0.093 3.907 16 C -0.450 4.450 17 H 0.108 0.892 18 C -0.154 4.154 19 N -0.335 5.335 20 Si 0.733 3.267 21 H -0.182 1.182 22 H -0.197 1.197 23 H -0.197 1.197 24 N -0.198 5.198 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.485 -3.579 -6.267 8.497 hybrid contribution 0.861 1.537 0.214 1.775 sum -3.624 -2.042 -6.052 7.344 Atomic orbital electron populations 1.22340 0.88066 1.01716 1.00010 1.61911 1.07024 1.14145 1.43626 1.22426 1.02175 0.88265 0.99548 1.21905 0.95349 0.97315 0.90758 1.22762 0.94023 0.98117 0.88429 0.88726 1.22340 0.96116 0.97321 0.98307 1.22371 0.97982 1.00149 0.96046 1.22708 0.92889 0.97926 0.94281 1.62709 1.24344 1.22003 1.09717 1.20918 0.93725 0.91352 0.91745 1.22270 1.09920 1.02620 0.90003 1.67713 1.09262 1.01648 1.35311 1.23140 1.04103 0.99607 0.97187 1.19216 0.91386 0.91924 0.88166 1.19629 1.23408 1.08712 0.93262 0.89232 1.26054 0.96362 0.96615 0.96346 1.69985 1.31848 1.30878 1.00768 0.86238 0.80464 0.80390 0.79644 1.18212 1.19673 1.19749 1.69323 1.13862 1.02543 1.34050 0.96069 0.91799 0.91657 0.90028 0.92216 0.95991 0.90982 0.94855 0.91268 0.91753 0.91798 0.91910 0.92334 0.91425 0.85278 0.85016 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.54 60.06 0.57 0.93 16 2 N -0.54 -8.67 4.90 -251.27 -1.23 -9.90 16 3 C 0.02 0.40 9.39 60.07 0.56 0.97 16 4 C 0.07 1.33 4.66 -3.83 -0.02 1.31 16 5 C 0.07 1.42 2.28 -65.79 -0.15 1.27 16 6 H 0.09 2.14 5.77 -51.93 -0.30 1.84 16 7 C -0.10 -1.64 6.42 -24.87 -0.16 -1.80 16 8 C -0.13 -2.00 6.93 -25.37 -0.18 -2.18 16 9 C 0.05 0.93 6.60 -2.76 -0.02 0.91 16 10 N -0.46 -9.49 4.97 -161.67 -0.80 -10.29 16 11 C 0.26 6.23 5.07 -155.02 -0.79 5.44 16 12 C -0.09 -2.11 11.17 -16.78 -0.19 -2.30 16 13 N -0.43 -10.68 10.47 -12.11 -0.13 -10.80 16 14 C -0.07 -1.79 10.97 -16.59 -0.18 -1.97 16 15 C 0.22 5.80 6.51 -84.83 -0.55 5.25 16 16 C -0.42 -10.49 9.14 -37.75 -0.35 -10.83 16 17 H 0.09 2.10 7.86 -52.49 -0.41 1.69 16 18 C 0.07 1.71 5.47 -17.34 -0.09 1.62 16 19 N -0.71 -17.33 11.60 55.55 0.64 -16.68 16 20 Si 0.91 17.53 29.57 -169.99 -5.03 12.51 16 21 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 N -0.48 -12.27 6.66 -10.14 -0.07 -12.34 16 25 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 27 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 28 H 0.08 1.57 6.62 -51.93 -0.34 1.22 16 29 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 30 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.07 1.19 7.81 -51.93 -0.41 0.79 16 32 H 0.03 0.69 7.79 -51.93 -0.40 0.28 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.28 7.34 -51.93 -0.38 0.89 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.13 2.86 8.06 -52.49 -0.42 2.43 16 40 H 0.13 3.00 8.06 -52.49 -0.42 2.58 16 41 H 0.28 6.12 8.29 -40.82 -0.34 5.78 16 LS Contribution 332.30 15.07 5.01 5.01 Total: -1.00 -27.08 332.30 -9.57 -36.65 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.44 Total: 7.22 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.53 Total: -1.38 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -1.58 Total: -60.01 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.08 -9.57 -36.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165075590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.753 kcal (2) G-P(sol) polarization free energy of solvation -27.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds