Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36919 * 120.00481 * 2 1 4 4 H 1.07993 * 120.00358 * 204.35435 * 3 2 1 5 5 C 1.38806 * 119.99368 * 24.35054 * 3 2 1 6 6 N 1.31574 * 120.00289 * 10.44018 * 5 3 2 7 7 Si 1.86806 * 119.99884 * 190.43736 * 5 3 2 8 8 H 1.48494 * 109.46983 * 59.99864 * 7 5 3 9 9 H 1.48497 * 109.47034 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46995 * 300.00286 * 7 5 3 11 11 C 1.38823 * 119.99849 * 180.02562 * 2 1 3 12 12 C 1.39089 * 119.66397 * 185.00211 * 11 2 1 13 13 C 1.38527 * 119.25158 * 180.02562 * 12 11 2 14 14 C 1.38548 * 118.59027 * 359.97438 * 13 12 11 15 15 C 1.39064 * 119.27356 * 0.02562 * 14 13 12 16 16 N 1.38985 * 119.65406 * 179.97438 * 15 14 13 17 17 C 1.46953 * 110.99839 * 179.97438 * 16 15 14 18 18 C 1.53051 * 109.36613 * 183.18489 * 17 16 15 19 19 N 1.46959 * 109.36813 * 301.60526 * 18 17 16 20 20 C 1.46899 * 111.00188 * 183.18829 * 19 18 17 21 21 C 1.46953 * 110.87957 * 59.31243 * 19 18 17 22 22 C 1.46960 * 111.00176 * 303.79736 * 16 15 14 23 23 N 1.32428 * 120.69039 * 0.25878 * 15 14 13 24 24 H 1.09001 * 109.47545 * 273.51624 * 1 2 3 25 25 H 1.09002 * 109.47243 * 33.51248 * 1 2 3 26 26 H 1.08998 * 109.47475 * 153.51284 * 1 2 3 27 27 H 0.97002 * 119.99811 * 179.97438 * 6 5 3 28 28 H 1.07999 * 120.37668 * 0.03689 * 12 11 2 29 29 H 1.08000 * 120.70149 * 179.97438 * 13 12 11 30 30 H 1.08002 * 120.36275 * 180.02562 * 14 13 12 31 31 H 1.09000 * 109.48953 * 63.22305 * 17 16 15 32 32 H 1.09004 * 109.51206 * 303.16779 * 17 16 15 33 33 H 1.08998 * 109.49297 * 181.63190 * 18 17 16 34 34 H 1.09001 * 109.50278 * 61.57539 * 18 17 16 35 35 H 1.09000 * 109.47591 * 59.99051 * 20 19 18 36 36 H 1.09003 * 109.46607 * 299.99722 * 20 19 18 37 37 H 1.08997 * 109.47207 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.48920 * 60.65621 * 21 19 18 39 39 H 1.09004 * 109.48687 * 180.71934 * 21 19 18 40 40 H 1.08999 * 109.49001 * 296.78499 * 22 16 15 41 41 H 1.08999 * 109.48476 * 56.82440 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 3.1575 1.2273 -0.3857 5 6 1.5482 2.3343 0.4957 6 7 0.4095 2.2509 1.1497 7 14 2.3554 3.9985 0.2343 8 1 2.4867 4.2618 -1.2213 9 1 1.5198 5.0570 0.8559 10 1 3.7017 3.9995 0.8608 11 6 2.1590 -1.2023 -0.0005 12 6 3.5459 -1.1965 0.1048 13 6 4.2299 -2.4011 0.1029 14 6 3.5034 -3.5759 -0.0041 15 6 2.1180 -3.5118 -0.1063 16 7 1.3814 -4.6854 -0.2145 17 6 -0.0566 -4.3977 -0.3101 18 6 -0.8362 -5.7142 -0.3474 19 7 -0.3849 -6.5155 -1.4938 20 6 -1.1636 -7.7559 -1.6082 21 6 1.0530 -6.8031 -1.3982 22 6 1.8329 -5.4868 -1.3606 23 7 1.4936 -2.3439 -0.1071 24 1 -0.3634 0.0630 1.0257 25 1 -0.3634 0.8568 -0.5674 26 1 -0.3634 -0.9198 -0.4583 27 1 -0.0105 3.0536 1.4964 28 1 4.0834 -0.2634 0.1874 29 1 5.3067 -2.4239 0.1831 30 1 4.0074 -4.5311 -0.0081 31 1 -0.2545 -3.8320 -1.2205 32 1 -0.3694 -3.8142 0.5559 33 1 -1.9009 -5.5037 -0.4475 34 1 -0.6600 -6.2678 0.5749 35 1 -2.2171 -7.5123 -1.7451 36 1 -1.0422 -8.3461 -0.6999 37 1 -0.8088 -8.3299 -2.4642 38 1 1.2510 -7.3689 -0.4878 39 1 1.3656 -7.3863 -2.2644 40 1 1.6569 -4.9337 -2.2831 41 1 2.8977 -5.6971 -1.2602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165092213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = 80.577539 kcal Electronic energy + Delta-G solvation = -21739.524186 eV Core-core repulsion = 18655.411361 eV Total energy + Delta-G solvation = -3084.112824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.92949 -38.42003 -36.24562 -34.60190 -32.06101 -31.25749 -30.57901 -29.13612 -27.42674 -26.17107 -24.38525 -23.83530 -23.16204 -21.37498 -20.57876 -19.63144 -17.65300 -16.65750 -15.89497 -15.37531 -15.03707 -14.93461 -14.76796 -14.52551 -14.33170 -14.01948 -13.79342 -13.38194 -12.95845 -12.51257 -12.37606 -12.24561 -11.91563 -11.72089 -11.43269 -11.19802 -11.15109 -11.05660 -10.79471 -10.76572 -10.70239 -10.44732 -10.29451 -9.56288 -9.08877 -8.85264 -8.39313 -8.32572 -7.86431 -6.69620 -6.35593 -3.86153 2.36335 2.55545 3.14795 3.15498 3.17478 3.88921 3.95470 4.08989 4.73945 4.80240 4.94601 5.01414 5.14498 5.21777 5.30156 5.42054 5.51509 5.55891 5.67315 5.72224 5.74153 5.82948 5.94596 6.11157 6.18108 6.27887 6.39455 6.47596 6.57272 6.74448 6.90225 6.96329 7.00336 7.04547 7.28402 7.30577 7.35753 7.42756 7.45433 7.79189 8.13812 8.51435 9.04231 9.25153 9.74298 10.58385 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030673 B = 0.004323 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.627244 B = 6475.364279 C = 7196.999656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.422 5.422 3 C -0.309 4.309 4 H 0.097 0.903 5 C 0.032 3.968 6 N -0.870 5.870 7 Si 0.930 3.070 8 H -0.272 1.272 9 H -0.282 1.282 10 H -0.271 1.271 11 C 0.391 3.609 12 C -0.271 4.271 13 C -0.022 4.022 14 C -0.308 4.308 15 C 0.357 3.643 16 N -0.481 5.481 17 C 0.073 3.927 18 C 0.054 3.946 19 N -0.547 5.547 20 C 0.026 3.974 21 C 0.058 3.942 22 C 0.066 3.934 23 N -0.597 5.597 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.270 0.730 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.248 -13.583 -3.921 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.111 5.111 3 C -0.438 4.438 4 H 0.114 0.886 5 C -0.174 4.174 6 N -0.505 5.505 7 Si 0.756 3.244 8 H -0.198 1.198 9 H -0.207 1.207 10 H -0.196 1.196 11 C 0.148 3.852 12 C -0.298 4.298 13 C -0.047 4.047 14 C -0.337 4.337 15 C 0.122 3.878 16 N -0.200 5.200 17 C -0.054 4.054 18 C -0.074 4.074 19 N -0.272 5.272 20 C -0.122 4.122 21 C -0.071 4.071 22 C -0.061 4.061 23 N -0.324 5.324 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.516 -13.084 -3.892 13.734 hybrid contribution 1.174 0.808 0.258 1.448 sum -0.342 -12.276 -3.635 12.807 Atomic orbital electron populations 1.21321 0.79986 0.98669 1.01421 1.42449 1.04968 1.01103 1.62546 1.19567 1.00806 0.84117 1.39337 0.88557 1.25416 0.96623 1.00243 0.95089 1.70092 1.17344 1.29905 1.33191 0.85932 0.79037 0.80606 0.78787 1.19759 1.20724 1.19631 1.18139 0.88444 0.85244 0.93324 1.21067 0.93741 0.98342 1.16686 1.20830 0.98290 0.91922 0.93663 1.20576 0.92677 0.97993 1.22417 1.19085 0.89509 0.86867 0.92376 1.59402 1.04796 1.16033 1.39727 1.21923 0.85532 0.94881 1.03086 1.22306 0.99368 0.94497 0.91255 1.62165 1.03710 1.18726 1.42585 1.22331 0.98623 0.90936 1.00299 1.22189 0.87526 0.96560 1.00784 1.22207 0.99395 0.93147 0.91361 1.66849 1.40258 0.96856 1.28434 0.92767 0.92584 0.94065 0.91928 0.86013 0.87000 0.87377 0.92687 0.89270 0.90226 0.94216 0.91412 0.95754 0.91548 0.93968 0.90211 0.93306 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.21 8.78 59.84 0.53 3.73 16 2 N -0.42 -11.00 3.11 -122.46 -0.38 -11.38 16 3 C -0.31 -8.12 8.89 -15.07 -0.13 -8.26 16 4 H 0.10 2.43 6.34 -52.49 -0.33 2.10 16 5 C 0.03 0.81 5.14 -17.45 -0.09 0.72 16 6 N -0.87 -23.10 10.66 55.49 0.59 -22.51 16 7 Si 0.93 19.75 29.57 -169.99 -5.03 14.72 16 8 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 9 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 11 C 0.39 9.64 7.33 -155.07 -1.14 8.50 16 12 C -0.27 -6.13 9.26 -39.16 -0.36 -6.49 16 13 C -0.02 -0.42 10.16 -39.36 -0.40 -0.82 16 14 C -0.31 -5.90 9.21 -39.16 -0.36 -6.26 16 15 C 0.36 7.30 6.40 -155.04 -0.99 6.30 16 16 N -0.48 -8.31 4.73 -173.07 -0.82 -9.13 16 17 C 0.07 1.22 4.78 -3.77 -0.02 1.20 16 18 C 0.05 0.71 5.62 -3.77 -0.02 0.69 16 19 N -0.55 -6.81 4.97 -242.76 -1.21 -8.02 16 20 C 0.03 0.25 9.60 60.06 0.58 0.83 16 21 C 0.06 0.68 5.62 -3.77 -0.02 0.66 16 22 C 0.07 0.94 5.37 -3.77 -0.02 0.92 16 23 N -0.60 -13.77 7.35 -11.62 -0.09 -13.86 16 24 H 0.05 1.41 7.42 -51.93 -0.39 1.03 16 25 H 0.06 1.41 7.25 -51.93 -0.38 1.03 16 26 H 0.04 0.95 7.18 -51.93 -0.37 0.58 16 27 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.12 2.73 6.28 -52.49 -0.33 2.40 16 29 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.11 1.80 7.16 -52.49 -0.38 1.42 16 31 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 32 H 0.09 1.62 7.83 -51.93 -0.41 1.21 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.79 8.13 -51.93 -0.42 0.36 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.14 6.78 -51.93 -0.35 0.79 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -28.40 323.65 -10.79 -39.19 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.29 Total: 4.37 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -2.46 Total: 1.73 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -1.90 Total: -64.89 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.40 -10.79 -39.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165092213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.765 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds