Wall clock time and date at job start Mon Mar 30 2020 02:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36919 * 120.00481 * 2 1 4 4 H 1.07993 * 120.00358 * 204.35435 * 3 2 1 5 5 C 1.38806 * 119.99368 * 24.35054 * 3 2 1 6 6 N 1.31574 * 120.00289 * 10.44018 * 5 3 2 7 7 Si 1.86806 * 119.99884 * 190.43736 * 5 3 2 8 8 H 1.48494 * 109.46983 * 59.99864 * 7 5 3 9 9 H 1.48497 * 109.47034 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46995 * 300.00286 * 7 5 3 11 11 C 1.38823 * 119.99849 * 180.02562 * 2 1 3 12 12 C 1.39089 * 119.66397 * 185.00211 * 11 2 1 13 13 C 1.38527 * 119.25158 * 180.02562 * 12 11 2 14 14 C 1.38548 * 118.59027 * 359.97438 * 13 12 11 15 15 C 1.39064 * 119.27356 * 0.02562 * 14 13 12 16 16 N 1.38985 * 119.65406 * 179.97438 * 15 14 13 17 17 C 1.46953 * 110.99839 * 179.97438 * 16 15 14 18 18 C 1.53051 * 109.36613 * 183.18489 * 17 16 15 19 19 N 1.46959 * 109.36813 * 301.60526 * 18 17 16 20 20 C 1.46899 * 111.00188 * 183.18829 * 19 18 17 21 21 C 1.46953 * 110.87957 * 59.31243 * 19 18 17 22 22 C 1.46960 * 111.00176 * 303.79736 * 16 15 14 23 23 N 1.32428 * 120.69039 * 0.25878 * 15 14 13 24 24 H 1.09001 * 109.47545 * 273.51624 * 1 2 3 25 25 H 1.09002 * 109.47243 * 33.51248 * 1 2 3 26 26 H 1.08998 * 109.47475 * 153.51284 * 1 2 3 27 27 H 0.97002 * 119.99811 * 179.97438 * 6 5 3 28 28 H 1.07999 * 120.37668 * 0.03689 * 12 11 2 29 29 H 1.08000 * 120.70149 * 179.97438 * 13 12 11 30 30 H 1.08002 * 120.36275 * 180.02562 * 14 13 12 31 31 H 1.09000 * 109.48953 * 63.22305 * 17 16 15 32 32 H 1.09004 * 109.51206 * 303.16779 * 17 16 15 33 33 H 1.08998 * 109.49297 * 181.63190 * 18 17 16 34 34 H 1.09001 * 109.50278 * 61.57539 * 18 17 16 35 35 H 1.09000 * 109.47591 * 59.99051 * 20 19 18 36 36 H 1.09003 * 109.46607 * 299.99722 * 20 19 18 37 37 H 1.08997 * 109.47207 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.48920 * 60.65621 * 21 19 18 39 39 H 1.09004 * 109.48687 * 180.71934 * 21 19 18 40 40 H 1.08999 * 109.49001 * 296.78499 * 22 16 15 41 41 H 1.08999 * 109.48476 * 56.82440 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 3.1575 1.2273 -0.3857 5 6 1.5482 2.3343 0.4957 6 7 0.4095 2.2509 1.1497 7 14 2.3554 3.9985 0.2343 8 1 2.4867 4.2618 -1.2213 9 1 1.5198 5.0570 0.8559 10 1 3.7017 3.9995 0.8608 11 6 2.1590 -1.2023 -0.0005 12 6 3.5459 -1.1965 0.1048 13 6 4.2299 -2.4011 0.1029 14 6 3.5034 -3.5759 -0.0041 15 6 2.1180 -3.5118 -0.1063 16 7 1.3814 -4.6854 -0.2145 17 6 -0.0566 -4.3977 -0.3101 18 6 -0.8362 -5.7142 -0.3474 19 7 -0.3849 -6.5155 -1.4938 20 6 -1.1636 -7.7559 -1.6082 21 6 1.0530 -6.8031 -1.3982 22 6 1.8329 -5.4868 -1.3606 23 7 1.4936 -2.3439 -0.1071 24 1 -0.3634 0.0630 1.0257 25 1 -0.3634 0.8568 -0.5674 26 1 -0.3634 -0.9198 -0.4583 27 1 -0.0105 3.0536 1.4964 28 1 4.0834 -0.2634 0.1874 29 1 5.3067 -2.4239 0.1831 30 1 4.0074 -4.5311 -0.0081 31 1 -0.2545 -3.8320 -1.2205 32 1 -0.3694 -3.8142 0.5559 33 1 -1.9009 -5.5037 -0.4475 34 1 -0.6600 -6.2678 0.5749 35 1 -2.2171 -7.5123 -1.7451 36 1 -1.0422 -8.3461 -0.6999 37 1 -0.8088 -8.3299 -2.4642 38 1 1.2510 -7.3689 -0.4878 39 1 1.3656 -7.3863 -2.2644 40 1 1.6569 -4.9337 -2.2831 41 1 2.8977 -5.6971 -1.2602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165092213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:18 Heat of formation + Delta-G solvation = 63.475313 kcal Electronic energy + Delta-G solvation = -21740.265794 eV Core-core repulsion = 18655.411361 eV Total energy + Delta-G solvation = -3084.854432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42531 -39.83309 -37.85356 -36.01444 -33.87508 -32.80514 -31.88205 -30.61655 -28.94933 -27.84901 -26.07128 -24.93066 -24.53476 -22.86965 -22.30544 -20.83567 -19.34117 -18.42010 -17.44478 -16.91805 -16.45136 -16.21224 -16.01827 -15.89600 -15.63681 -15.45456 -15.34701 -15.07690 -14.57534 -13.92977 -13.75696 -13.47343 -13.28745 -13.05633 -12.94350 -12.76541 -12.65343 -12.60701 -12.27493 -12.24214 -12.11997 -11.89358 -11.84868 -11.33096 -10.76092 -10.59449 -10.04867 -9.55849 -9.30831 -8.49754 -8.21438 -5.83768 0.69514 0.88044 1.41667 1.48611 1.53144 2.22643 2.62313 2.91916 2.97458 3.05056 3.39779 3.83357 3.94677 4.05255 4.22135 4.32972 4.35778 4.47481 4.56882 4.65426 4.67964 4.68293 4.71473 4.76038 4.82337 4.92902 4.96384 4.98024 5.00580 5.05069 5.11973 5.28633 5.35895 5.39728 5.72241 5.74005 5.85058 5.98098 6.06023 6.11348 6.45651 6.65549 7.23970 7.37822 7.90532 8.70327 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030673 B = 0.004323 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.627244 B = 6475.364279 C = 7196.999656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.154 3.846 2 N -0.454 5.454 3 C -0.331 4.331 4 H 0.098 0.902 5 C -0.015 4.015 6 N -0.906 5.906 7 Si 0.999 3.001 8 H -0.267 1.267 9 H -0.280 1.280 10 H -0.264 1.264 11 C 0.372 3.628 12 C -0.296 4.296 13 C -0.010 4.010 14 C -0.292 4.292 15 C 0.342 3.658 16 N -0.479 5.479 17 C 0.079 3.921 18 C 0.065 3.935 19 N -0.563 5.563 20 C 0.028 3.972 21 C 0.063 3.937 22 C 0.064 3.936 23 N -0.615 5.615 24 H 0.030 0.970 25 H 0.041 0.959 26 H 0.045 0.955 27 H 0.270 0.730 28 H 0.116 0.884 29 H 0.154 0.846 30 H 0.145 0.855 31 H 0.030 0.970 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.106 0.894 40 H 0.032 0.968 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 -16.085 -4.573 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.147 5.147 3 C -0.459 4.459 4 H 0.115 0.885 5 C -0.216 4.216 6 N -0.543 5.543 7 Si 0.822 3.178 8 H -0.192 1.192 9 H -0.205 1.205 10 H -0.189 1.189 11 C 0.133 3.867 12 C -0.323 4.323 13 C -0.036 4.036 14 C -0.319 4.319 15 C 0.107 3.893 16 N -0.197 5.197 17 C -0.049 4.049 18 C -0.064 4.064 19 N -0.289 5.289 20 C -0.120 4.120 21 C -0.065 4.065 22 C -0.062 4.062 23 N -0.343 5.343 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.172 0.828 30 H 0.162 0.838 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.125 0.875 40 H 0.050 0.950 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.116 -15.670 -4.561 16.320 hybrid contribution 0.746 1.254 0.433 1.522 sum 0.862 -14.416 -4.128 15.020 Atomic orbital electron populations 1.20947 0.80396 0.98039 0.99563 1.42538 1.04908 1.01696 1.65557 1.19825 1.01184 0.84873 1.40003 0.88457 1.26305 0.97171 1.03518 0.94595 1.70218 1.18832 1.30625 1.34651 0.84894 0.78148 0.75970 0.78784 1.19167 1.20524 1.18862 1.18563 0.89487 0.85414 0.93282 1.21208 0.93104 0.99668 1.18334 1.21291 1.00379 0.90583 0.91298 1.21058 0.92123 0.99513 1.19241 1.19673 0.90807 0.87025 0.91773 1.59518 1.04800 1.14536 1.40894 1.21809 0.85857 0.96531 1.00682 1.22161 0.99369 0.92798 0.92047 1.62161 1.04450 1.20339 1.41902 1.22387 0.98585 0.89701 1.01307 1.22211 0.86893 0.95087 1.02305 1.22375 1.00942 0.93618 0.89259 1.66869 1.41180 0.97445 1.28761 0.95160 0.93980 0.93631 0.92027 0.86557 0.82793 0.83751 0.95147 0.91716 0.89047 0.93847 0.90853 0.95035 0.89962 0.93374 0.87542 0.94962 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 8.14 8.78 127.77 1.12 9.26 16 2 N -0.45 -24.80 3.11 -541.36 -1.69 -26.48 16 3 C -0.33 -18.01 8.89 84.03 0.75 -17.27 16 4 H 0.10 5.08 6.34 -2.91 -0.02 5.06 16 5 C -0.01 -0.77 5.14 84.87 0.44 -0.33 16 6 N -0.91 -50.28 10.66 21.65 0.23 -50.05 16 7 Si 1.00 41.36 29.57 68.60 2.03 43.39 16 8 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 9 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 10 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 11 C 0.37 18.85 7.33 133.06 0.98 19.83 16 12 C -0.30 -13.35 9.26 22.54 0.21 -13.14 16 13 C -0.01 -0.37 10.16 22.41 0.23 -0.14 16 14 C -0.29 -10.29 9.21 22.54 0.21 -10.08 16 15 C 0.34 13.65 6.40 133.04 0.85 14.50 16 16 N -0.48 -15.91 4.73 -701.46 -3.32 -19.23 16 17 C 0.08 2.64 4.78 86.31 0.41 3.05 16 18 C 0.06 1.62 5.62 86.31 0.49 2.10 16 19 N -0.56 -12.57 4.97 -921.96 -4.58 -17.15 16 20 C 0.03 0.43 9.60 127.69 1.23 1.66 16 21 C 0.06 1.28 5.62 86.31 0.48 1.76 16 22 C 0.06 1.67 5.37 86.31 0.46 2.14 16 23 N -0.62 -28.98 7.35 -190.66 -1.40 -30.38 16 24 H 0.03 1.68 7.42 -2.39 -0.02 1.66 16 25 H 0.04 2.25 7.25 -2.39 -0.02 2.23 16 26 H 0.05 2.26 7.18 -2.39 -0.02 2.24 16 27 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.12 5.29 6.28 -2.91 -0.02 5.27 16 29 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 30 H 0.14 4.06 7.16 -2.91 -0.02 4.04 16 31 H 0.03 1.15 8.04 -2.39 -0.02 1.13 16 32 H 0.06 2.44 7.83 -2.39 -0.02 2.42 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 36 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.08 1.05 8.13 -2.39 -0.02 1.03 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 1.64 8.13 -2.39 -0.02 1.62 16 40 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.10 2.33 6.78 -2.39 -0.02 2.31 16 Total: -1.00 -64.01 323.65 0.13 -63.88 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 1.01 Total: 22.67 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 7.85 Total: 13.34 kcal Atomic # 7 Polarization: -132.52 SS G_CDS: -10.76 Total: -143.28 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -64.01 0.13 -63.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165092213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.358 kcal (2) G-P(sol) polarization free energy of solvation -64.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds