Wall clock time and date at job start Mon Mar 30 2020 02:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 119.99924 * 2 1 4 4 C 1.53002 * 109.46598 * 90.00195 * 3 2 1 5 5 N 1.46904 * 109.46811 * 179.97438 * 4 3 2 6 6 C 1.48533 * 110.99929 * 52.60864 * 5 4 3 7 7 C 1.54936 * 103.22741 * 159.72052 * 6 5 4 8 8 C 1.54595 * 102.91924 * 322.58115 * 7 6 5 9 9 C 1.47902 * 110.99724 * 170.00279 * 5 4 3 10 10 C 1.38826 * 119.99985 * 180.02562 * 2 1 3 11 11 C 1.39963 * 119.96997 * 184.72199 * 10 2 1 12 12 N 1.32125 * 120.31683 * 179.74986 * 11 10 2 13 13 C 1.31923 * 120.27513 * 0.52501 * 12 11 10 14 14 C 1.40686 * 119.93136 * 359.72903 * 13 12 11 15 15 C 1.41274 * 120.15580 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00319 * 353.84495 * 15 14 13 17 17 C 1.40056 * 119.99884 * 173.84482 * 15 14 13 18 18 N 1.30731 * 119.99913 * 6.35474 * 17 15 14 19 19 Si 1.86801 * 120.00024 * 186.35247 * 17 15 14 20 20 H 1.48499 * 109.47134 * 89.99719 * 19 17 15 21 21 H 1.48500 * 109.47193 * 210.00291 * 19 17 15 22 22 H 1.48506 * 109.47098 * 330.00031 * 19 17 15 23 23 N 1.32237 * 119.97126 * 4.99575 * 10 2 1 24 24 H 1.09003 * 109.47484 * 89.99414 * 1 2 3 25 25 H 1.08992 * 109.46903 * 209.99625 * 1 2 3 26 26 H 1.08998 * 109.47203 * 329.99660 * 1 2 3 27 27 H 1.08996 * 109.47172 * 210.00245 * 3 2 1 28 28 H 1.09000 * 109.47216 * 330.00252 * 3 2 1 29 29 H 1.08996 * 109.47399 * 299.99910 * 4 3 2 30 30 H 1.09003 * 109.47039 * 60.00554 * 4 3 2 31 31 H 1.09006 * 110.66265 * 278.15457 * 6 5 4 32 32 H 1.09002 * 110.67000 * 41.28300 * 6 5 4 33 33 H 1.09002 * 110.71980 * 204.22602 * 7 6 5 34 34 H 1.08997 * 110.72727 * 80.94329 * 7 6 5 35 35 H 1.08998 * 110.31205 * 263.04116 * 8 7 6 36 36 H 1.09005 * 110.38763 * 140.91741 * 8 7 6 37 37 H 1.09002 * 109.92002 * 333.50619 * 9 5 4 38 38 H 1.08995 * 109.91801 * 94.61004 * 9 5 4 39 39 H 1.08000 * 119.84120 * 0.02562 * 11 10 2 40 40 H 1.08002 * 120.03802 * 179.74993 * 13 12 11 41 41 H 0.97001 * 119.99359 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 1.4426 5 7 3.1875 2.9823 1.4426 6 6 2.5001 3.9943 0.6004 7 6 3.0707 5.3368 1.1227 8 6 3.1924 5.0920 2.6443 9 6 3.2450 3.5611 2.8025 10 6 2.1591 -1.2023 -0.0005 11 6 3.5552 -1.2036 0.0993 12 7 4.2224 -2.3441 0.1044 13 6 3.5789 -3.4915 0.0050 14 6 2.1761 -3.5027 -0.1012 15 6 1.4824 -4.7287 -0.2084 16 1 2.0317 -5.6531 -0.3091 17 6 0.0821 -4.7454 -0.1841 18 7 -0.5851 -3.6211 -0.1876 19 14 -0.8321 -6.3739 -0.1468 20 1 -1.0502 -6.7869 1.2629 21 1 -2.1435 -6.2211 -0.8265 22 1 -0.0292 -7.4085 -0.8470 23 7 1.5011 -2.3449 -0.1008 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 3.1499 1.1385 -0.5138 28 1 1.6084 2.0285 -0.5138 29 1 1.5001 1.8406 1.9564 30 1 3.0417 0.9507 1.9563 31 1 2.7497 3.8533 -0.4512 32 1 1.4212 3.9507 0.7500 33 1 2.3803 6.1551 0.9177 34 1 4.0485 5.5368 0.6847 35 1 2.3235 5.4964 3.1633 36 1 4.1066 5.5437 3.0296 37 1 2.3917 3.2189 3.3881 38 1 4.1733 3.2671 3.2922 39 1 4.0893 -0.2682 0.1770 40 1 4.1285 -4.4212 0.0055 41 1 -1.5549 -3.6328 -0.1704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165142241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:07 Heat of formation + Delta-G solvation = 58.569076 kcal Electronic energy + Delta-G solvation = -21419.312632 eV Core-core repulsion = 18334.245450 eV Total energy + Delta-G solvation = -3085.067183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 4.06 seconds Orbital eigenvalues (eV) -39.28653 -38.70986 -36.09362 -33.90036 -32.67455 -31.38264 -29.56137 -29.06083 -28.05221 -26.12105 -24.76504 -23.09216 -21.90900 -21.05507 -20.80830 -19.83865 -17.54542 -16.44155 -16.07049 -15.99754 -15.29504 -15.00780 -14.77274 -14.29029 -14.01050 -13.73250 -13.40667 -13.07601 -12.83302 -12.50350 -12.30907 -11.93219 -11.58072 -11.50021 -11.45802 -11.34631 -11.27017 -11.12238 -11.06083 -10.74360 -10.67095 -10.60897 -10.31938 -9.75057 -9.46287 -9.30925 -8.42092 -8.26272 -7.34386 -6.58201 -6.42917 -4.62928 2.71684 3.04646 3.07991 3.12398 3.31019 3.65529 3.88304 4.22456 4.55803 4.59466 4.73230 4.85171 5.17083 5.21033 5.30217 5.42045 5.55911 5.64157 5.68820 5.69099 5.81663 5.85760 5.88483 5.94247 6.00627 6.05851 6.14186 6.26657 6.40956 6.44331 6.46703 6.70836 6.87148 6.94584 7.03144 7.05318 7.20551 7.66337 7.83211 8.13856 8.26119 8.59263 8.86160 9.45769 10.02314 10.20188 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.031553 B = 0.003944 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.173475 B = 7097.683208 C = 7615.795735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.616 5.616 3 C 0.139 3.861 4 C 0.029 3.971 5 N -0.514 5.514 6 C 0.030 3.970 7 C -0.124 4.124 8 C -0.131 4.131 9 C 0.035 3.965 10 C 0.370 3.630 11 C -0.165 4.165 12 N -0.408 5.408 13 C -0.109 4.109 14 C 0.245 3.755 15 C -0.417 4.417 16 H 0.089 0.911 17 C 0.070 3.930 18 N -0.711 5.711 19 Si 0.910 3.090 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.260 1.260 23 N -0.503 5.503 24 H 0.034 0.966 25 H 0.088 0.912 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.480 13.419 2.911 13.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.334 5.334 3 C 0.014 3.986 4 C -0.101 4.101 5 N -0.239 5.239 6 C -0.098 4.098 7 C -0.162 4.162 8 C -0.169 4.169 9 C -0.093 4.093 10 C 0.129 3.871 11 C -0.326 4.326 12 N -0.119 5.119 13 C -0.279 4.279 14 C 0.117 3.883 15 C -0.450 4.450 16 H 0.107 0.893 17 C -0.157 4.157 18 N -0.332 5.332 19 Si 0.734 3.266 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.184 1.184 23 N -0.229 5.229 24 H 0.052 0.948 25 H 0.107 0.893 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.241 13.522 2.709 13.792 hybrid contribution -1.407 -0.526 0.427 1.561 sum -1.647 12.995 3.136 13.469 Atomic orbital electron populations 1.21349 0.79889 1.01551 1.00304 1.45904 1.04695 1.01850 1.80915 1.21198 0.97521 0.85089 0.94783 1.22861 0.96402 0.91585 0.99245 1.64792 1.48134 1.02780 1.08154 1.23283 0.96469 0.91221 0.98823 1.22480 1.01592 0.96862 0.95239 1.22393 1.01993 0.95681 0.96813 1.22867 1.01546 0.93891 0.90970 1.19506 0.89055 0.87675 0.90907 1.22042 0.90422 0.96045 1.24106 1.67531 1.39971 0.98443 1.05932 1.22905 0.93287 0.94928 1.16742 1.19107 0.89479 0.91507 0.88222 1.19605 0.91172 0.92876 1.41364 0.89259 1.26101 0.98313 0.97808 0.93432 1.70103 1.07971 1.27176 1.27937 0.86282 0.78933 0.82064 0.79304 1.19368 1.20170 1.18408 1.69042 1.35315 0.95223 1.23327 0.94750 0.89320 0.94462 0.90038 0.91739 0.94819 0.89888 0.89792 0.93812 0.91294 0.90708 0.91767 0.91103 0.93903 0.90327 0.85807 0.85359 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.13 10.42 59.85 0.62 2.75 16 2 N -0.62 -12.45 2.98 -181.55 -0.54 -12.99 16 3 C 0.14 2.25 4.70 -4.04 -0.02 2.23 16 4 C 0.03 0.43 5.33 -3.82 -0.02 0.41 16 5 N -0.51 -6.69 5.40 -230.44 -1.24 -7.93 16 6 C 0.03 0.32 5.10 -1.90 -0.01 0.31 16 7 C -0.12 -1.10 7.06 -24.87 -0.18 -1.28 16 8 C -0.13 -1.17 6.93 -25.37 -0.18 -1.35 16 9 C 0.04 0.40 6.70 -2.75 -0.02 0.38 16 10 C 0.37 9.12 7.37 -155.02 -1.14 7.97 16 11 C -0.16 -4.03 10.31 -16.78 -0.17 -4.20 16 12 N -0.41 -10.60 10.47 -12.11 -0.13 -10.73 16 13 C -0.11 -2.86 10.97 -16.59 -0.18 -3.04 16 14 C 0.24 6.74 6.54 -84.83 -0.55 6.19 16 15 C -0.42 -10.91 9.15 -37.75 -0.35 -11.26 16 16 H 0.09 2.16 7.85 -52.49 -0.41 1.75 16 17 C 0.07 1.71 5.49 -17.34 -0.10 1.61 16 18 N -0.71 -17.99 11.51 55.55 0.64 -17.35 16 19 Si 0.91 18.00 29.56 -169.99 -5.03 12.98 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 23 N -0.50 -13.68 6.89 -10.14 -0.07 -13.75 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.09 1.94 7.46 -51.93 -0.39 1.55 16 26 H 0.04 0.58 8.07 -51.93 -0.42 0.16 16 27 H 0.08 1.39 6.38 -51.93 -0.33 1.06 16 28 H 0.06 0.91 6.73 -51.93 -0.35 0.56 16 29 H 0.03 0.51 7.81 -51.93 -0.41 0.10 16 30 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 31 H 0.08 0.89 7.67 -51.93 -0.40 0.49 16 32 H 0.04 0.47 8.00 -51.93 -0.42 0.06 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.04 0.49 7.57 -51.93 -0.39 0.10 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.12 2.76 6.23 -52.49 -0.33 2.43 16 40 H 0.13 3.08 8.06 -52.49 -0.42 2.65 16 41 H 0.27 6.24 8.29 -40.82 -0.34 5.90 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -29.45 331.26 -10.02 -39.47 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.35 Total: 4.57 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.29 Total: 0.74 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -1.34 Total: -62.75 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.45 -10.02 -39.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165142241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.038 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.06 seconds