Wall clock time and date at job start Mon Mar 30 2020 02:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 119.99924 * 2 1 4 4 C 1.53002 * 109.46598 * 90.00195 * 3 2 1 5 5 N 1.46904 * 109.46811 * 179.97438 * 4 3 2 6 6 C 1.48533 * 110.99929 * 52.60864 * 5 4 3 7 7 C 1.54936 * 103.22741 * 159.72052 * 6 5 4 8 8 C 1.54595 * 102.91924 * 322.58115 * 7 6 5 9 9 C 1.47902 * 110.99724 * 170.00279 * 5 4 3 10 10 C 1.38826 * 119.99985 * 180.02562 * 2 1 3 11 11 C 1.39963 * 119.96997 * 184.72199 * 10 2 1 12 12 N 1.32125 * 120.31683 * 179.74986 * 11 10 2 13 13 C 1.31923 * 120.27513 * 0.52501 * 12 11 10 14 14 C 1.40686 * 119.93136 * 359.72903 * 13 12 11 15 15 C 1.41274 * 120.15580 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00319 * 353.84495 * 15 14 13 17 17 C 1.40056 * 119.99884 * 173.84482 * 15 14 13 18 18 N 1.30731 * 119.99913 * 6.35474 * 17 15 14 19 19 Si 1.86801 * 120.00024 * 186.35247 * 17 15 14 20 20 H 1.48499 * 109.47134 * 89.99719 * 19 17 15 21 21 H 1.48500 * 109.47193 * 210.00291 * 19 17 15 22 22 H 1.48506 * 109.47098 * 330.00031 * 19 17 15 23 23 N 1.32237 * 119.97126 * 4.99575 * 10 2 1 24 24 H 1.09003 * 109.47484 * 89.99414 * 1 2 3 25 25 H 1.08992 * 109.46903 * 209.99625 * 1 2 3 26 26 H 1.08998 * 109.47203 * 329.99660 * 1 2 3 27 27 H 1.08996 * 109.47172 * 210.00245 * 3 2 1 28 28 H 1.09000 * 109.47216 * 330.00252 * 3 2 1 29 29 H 1.08996 * 109.47399 * 299.99910 * 4 3 2 30 30 H 1.09003 * 109.47039 * 60.00554 * 4 3 2 31 31 H 1.09006 * 110.66265 * 278.15457 * 6 5 4 32 32 H 1.09002 * 110.67000 * 41.28300 * 6 5 4 33 33 H 1.09002 * 110.71980 * 204.22602 * 7 6 5 34 34 H 1.08997 * 110.72727 * 80.94329 * 7 6 5 35 35 H 1.08998 * 110.31205 * 263.04116 * 8 7 6 36 36 H 1.09005 * 110.38763 * 140.91741 * 8 7 6 37 37 H 1.09002 * 109.92002 * 333.50619 * 9 5 4 38 38 H 1.08995 * 109.91801 * 94.61004 * 9 5 4 39 39 H 1.08000 * 119.84120 * 0.02562 * 11 10 2 40 40 H 1.08002 * 120.03802 * 179.74993 * 13 12 11 41 41 H 0.97001 * 119.99359 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 1.4426 5 7 3.1875 2.9823 1.4426 6 6 2.5001 3.9943 0.6004 7 6 3.0707 5.3368 1.1227 8 6 3.1924 5.0920 2.6443 9 6 3.2450 3.5611 2.8025 10 6 2.1591 -1.2023 -0.0005 11 6 3.5552 -1.2036 0.0993 12 7 4.2224 -2.3441 0.1044 13 6 3.5789 -3.4915 0.0050 14 6 2.1761 -3.5027 -0.1012 15 6 1.4824 -4.7287 -0.2084 16 1 2.0317 -5.6531 -0.3091 17 6 0.0821 -4.7454 -0.1841 18 7 -0.5851 -3.6211 -0.1876 19 14 -0.8321 -6.3739 -0.1468 20 1 -1.0502 -6.7869 1.2629 21 1 -2.1435 -6.2211 -0.8265 22 1 -0.0292 -7.4085 -0.8470 23 7 1.5011 -2.3449 -0.1008 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 3.1499 1.1385 -0.5138 28 1 1.6084 2.0285 -0.5138 29 1 1.5001 1.8406 1.9564 30 1 3.0417 0.9507 1.9563 31 1 2.7497 3.8533 -0.4512 32 1 1.4212 3.9507 0.7500 33 1 2.3803 6.1551 0.9177 34 1 4.0485 5.5368 0.6847 35 1 2.3235 5.4964 3.1633 36 1 4.1066 5.5437 3.0296 37 1 2.3917 3.2189 3.3881 38 1 4.1733 3.2671 3.2922 39 1 4.0893 -0.2682 0.1770 40 1 4.1285 -4.4212 0.0055 41 1 -1.5549 -3.6328 -0.1704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165142241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:06 Heat of formation + Delta-G solvation = 40.233260 kcal Electronic energy + Delta-G solvation = -21420.107733 eV Core-core repulsion = 18334.245450 eV Total energy + Delta-G solvation = -3085.862283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = -0.73 seconds Orbital eigenvalues (eV) -40.94301 -39.91902 -37.65640 -35.80905 -34.03131 -33.04662 -31.37717 -29.99681 -29.33026 -27.87023 -26.44949 -24.39005 -23.83547 -22.31635 -21.72093 -21.19791 -19.40734 -18.12205 -17.45074 -17.05022 -16.90396 -16.66851 -16.40417 -15.62017 -15.43084 -15.00774 -14.79391 -14.60220 -14.26958 -13.77852 -13.53213 -13.35868 -13.23825 -12.98773 -12.90819 -12.64638 -12.49705 -12.41859 -12.25905 -12.04609 -11.99258 -11.82641 -11.64639 -11.41102 -11.31941 -11.21934 -10.15232 -9.41790 -9.28617 -8.36151 -8.30516 -6.61345 0.84273 1.26648 1.43272 1.56456 1.57669 2.18385 2.22245 2.84344 3.13329 3.70248 3.78203 3.90112 3.91503 4.10003 4.18966 4.21045 4.30879 4.35765 4.41697 4.50776 4.57630 4.64108 4.69792 4.78777 4.83131 4.93640 4.94778 4.99501 5.02330 5.08051 5.13391 5.21172 5.21589 5.30981 5.33354 5.73768 5.94401 5.97960 6.04595 6.33235 6.46082 6.69000 6.93783 7.48255 8.07843 8.36490 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.031553 B = 0.003944 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.173475 B = 7097.683208 C = 7615.795735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.613 5.613 3 C 0.141 3.859 4 C 0.044 3.956 5 N -0.526 5.526 6 C 0.025 3.975 7 C -0.119 4.119 8 C -0.125 4.125 9 C 0.030 3.970 10 C 0.363 3.637 11 C -0.171 4.171 12 N -0.419 5.419 13 C -0.135 4.135 14 C 0.214 3.786 15 C -0.441 4.441 16 H 0.099 0.901 17 C 0.026 3.974 18 N -0.737 5.737 19 Si 0.992 3.008 20 H -0.265 1.265 21 H -0.267 1.267 22 H -0.254 1.254 23 N -0.528 5.528 24 H 0.033 0.967 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.034 0.966 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.625 14.675 2.934 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.330 5.330 3 C 0.017 3.983 4 C -0.086 4.086 5 N -0.251 5.251 6 C -0.103 4.103 7 C -0.157 4.157 8 C -0.164 4.164 9 C -0.098 4.098 10 C 0.119 3.881 11 C -0.334 4.334 12 N -0.130 5.130 13 C -0.304 4.304 14 C 0.087 3.913 15 C -0.473 4.473 16 H 0.117 0.883 17 C -0.198 4.198 18 N -0.358 5.358 19 Si 0.812 3.188 20 H -0.189 1.189 21 H -0.192 1.192 22 H -0.178 1.178 23 N -0.256 5.256 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.369 14.821 2.732 15.133 hybrid contribution -1.056 -0.781 0.427 1.381 sum -2.425 14.040 3.159 14.594 Atomic orbital electron populations 1.21319 0.79007 1.01866 1.00325 1.46159 1.05425 1.01717 1.79682 1.21374 0.97232 0.83840 0.95824 1.22546 0.96050 0.92172 0.97800 1.64771 1.48193 1.02598 1.09586 1.23394 0.96669 0.91584 0.98616 1.22484 1.02026 0.96279 0.94863 1.22388 1.03150 0.93666 0.97151 1.22944 1.01153 0.95701 0.89982 1.19823 0.89571 0.88573 0.90111 1.22346 0.90840 0.96307 1.23881 1.67510 1.40449 0.98891 1.06149 1.23059 0.93324 0.95536 1.18477 1.19544 0.90270 0.92462 0.89055 1.20018 0.92570 0.92918 1.41817 0.88334 1.27032 0.98468 1.01843 0.92479 1.70178 1.08789 1.29517 1.27301 0.85053 0.77499 0.76849 0.79395 1.18934 1.19164 1.17768 1.69064 1.35925 0.95849 1.24716 0.94800 0.92519 0.90546 0.90939 0.88805 0.94743 0.92851 0.89567 0.93384 0.89311 0.90653 0.90563 0.90054 0.94293 0.90821 0.84000 0.84237 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.37 10.42 127.77 1.33 5.70 16 2 N -0.61 -24.58 2.98 -728.30 -2.17 -26.75 16 3 C 0.14 4.38 4.70 86.38 0.41 4.79 16 4 C 0.04 1.30 5.33 86.30 0.46 1.76 16 5 N -0.53 -12.98 5.40 -882.99 -4.76 -17.74 16 6 C 0.02 0.47 5.10 86.65 0.44 0.92 16 7 C -0.12 -1.77 7.06 31.80 0.22 -1.54 16 8 C -0.13 -1.92 6.93 31.47 0.22 -1.70 16 9 C 0.03 0.64 6.70 86.45 0.58 1.22 16 10 C 0.36 18.19 7.37 133.37 0.98 19.17 16 11 C -0.17 -8.54 10.31 85.07 0.88 -7.67 16 12 N -0.42 -22.32 10.47 -192.23 -2.01 -24.34 16 13 C -0.14 -7.34 10.97 85.28 0.94 -6.41 16 14 C 0.21 12.16 6.54 40.15 0.26 12.42 16 15 C -0.44 -23.48 9.15 23.46 0.21 -23.26 16 16 H 0.10 4.85 7.85 -2.91 -0.02 4.82 16 17 C 0.03 1.25 5.49 85.30 0.47 1.72 16 18 N -0.74 -37.60 11.51 21.84 0.25 -37.35 16 19 Si 0.99 36.49 29.56 68.60 2.03 38.52 16 20 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 21 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 22 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 23 N -0.53 -29.49 6.89 -186.00 -1.28 -30.78 16 24 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 2.49 7.46 -2.39 -0.02 2.47 16 26 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 27 H 0.07 2.41 6.38 -2.39 -0.02 2.40 16 28 H 0.09 2.39 6.73 -2.39 -0.02 2.38 16 29 H 0.03 1.00 7.81 -2.39 -0.02 0.98 16 30 H 0.05 1.88 8.09 -2.39 -0.02 1.86 16 31 H 0.09 1.61 7.67 -2.38 -0.02 1.59 16 32 H 0.05 0.89 8.00 -2.39 -0.02 0.87 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.04 0.85 7.57 -2.39 -0.02 0.83 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.14 6.38 6.23 -2.91 -0.02 6.36 16 40 H 0.14 6.94 8.06 -2.91 -0.02 6.92 16 41 H 0.28 12.88 8.29 -92.71 -0.77 12.11 16 Total: -1.00 -64.80 331.26 0.46 -64.35 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 1.01 Total: 26.97 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 7.40 Total: 7.12 kcal Atomic # 7 Polarization: -126.97 SS G_CDS: -9.98 Total: -136.95 kcal Atomic # 14 Polarization: 36.49 SS G_CDS: 2.03 Total: 38.52 kcal Total: -64.80 0.46 -64.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165142241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.580 kcal (2) G-P(sol) polarization free energy of solvation -64.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.73 seconds