Wall clock time and date at job start Mon Mar 30 2020 01:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35755 * 116.99939 * 2 1 4 4 C 1.39488 * 120.80036 * 359.71703 * 3 2 1 5 5 C 1.37809 * 119.25122 * 179.72556 * 4 3 2 6 6 N 1.32054 * 120.91512 * 0.56775 * 5 4 3 7 7 C 1.32489 * 121.75888 * 359.70675 * 6 5 4 8 8 N 1.39027 * 119.67387 * 179.97438 * 7 6 5 9 9 C 1.46501 * 119.99718 * 185.02436 * 8 7 6 10 10 C 1.50701 * 109.46950 * 89.99749 * 9 8 7 11 11 H 1.07996 * 120.00281 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99961 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99525 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00046 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47348 * 89.99992 * 14 12 10 16 16 H 1.48502 * 109.47004 * 210.00245 * 14 12 10 17 17 H 1.48504 * 109.47256 * 330.00278 * 14 12 10 18 18 C 1.46491 * 120.00054 * 5.02102 * 8 7 6 19 19 C 1.54272 * 110.03052 * 57.17046 * 18 8 7 20 20 C 1.54892 * 104.19604 * 217.10345 * 19 18 8 21 21 C 1.54894 * 102.74750 * 37.94054 * 20 19 18 22 22 C 1.53876 * 110.03682 * 300.00361 * 18 8 7 23 23 C 1.38900 * 120.64688 * 0.02562 * 7 6 5 24 24 H 1.08999 * 109.47144 * 300.00247 * 1 2 3 25 25 H 1.08998 * 109.47043 * 59.99846 * 1 2 3 26 26 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.37372 * 359.97438 * 4 3 2 28 28 H 1.08006 * 119.53693 * 180.27335 * 5 4 3 29 29 H 1.08992 * 109.46691 * 209.99697 * 9 8 7 30 30 H 1.09001 * 109.46902 * 330.00084 * 9 8 7 31 31 H 0.97001 * 119.99321 * 180.02562 * 13 12 10 32 32 H 1.09002 * 110.01540 * 178.60884 * 18 8 7 33 33 H 1.08995 * 110.48371 * 335.77882 * 19 18 8 34 34 H 1.09002 * 110.48760 * 98.42554 * 19 18 8 35 35 H 1.09003 * 110.75315 * 279.63051 * 20 19 18 36 36 H 1.08994 * 110.91874 * 156.33187 * 20 19 18 37 37 H 1.09001 * 110.48660 * 203.38222 * 21 20 19 38 38 H 1.08999 * 110.48715 * 80.73761 * 21 20 19 39 39 H 1.09001 * 110.02866 * 238.56804 * 22 18 8 40 40 H 1.08993 * 110.02932 * 359.97438 * 22 18 8 41 41 H 1.07999 * 120.48599 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.3020 2.3899 -0.0059 5 6 1.9606 3.6005 0.0000 6 7 3.2800 3.6550 0.0000 7 6 4.0233 2.5583 0.0000 8 7 5.4094 2.6662 -0.0006 9 6 6.2377 1.4630 -0.1117 10 6 6.5114 1.1740 -1.5652 11 1 6.1090 1.8220 -2.3297 12 6 7.2765 0.0829 -1.9189 13 7 7.7669 -0.7060 -0.9879 14 14 7.6164 -0.2749 -3.7205 15 1 8.8609 0.4199 -4.1370 16 1 7.7786 -1.7385 -3.9124 17 1 6.4797 0.2094 -4.5444 18 6 6.0415 3.9831 0.1098 19 6 5.5695 4.6896 1.3974 20 6 5.4468 6.1790 0.9903 21 6 4.8876 6.0943 -0.4516 22 6 5.6079 4.8763 -1.0658 23 6 3.4313 1.3018 -0.0004 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2226 2.3555 -0.0110 28 1 1.3896 4.5172 0.0000 29 1 7.1808 1.6217 0.4111 30 1 5.7127 0.6181 0.3342 31 1 8.3054 -1.4734 -1.2368 32 1 7.1263 3.8767 0.1176 33 1 4.6021 4.2997 1.7137 34 1 6.3078 4.5705 2.1905 35 1 6.4233 6.6633 0.9980 36 1 4.7513 6.7051 1.6441 37 1 5.1281 7.0002 -1.0080 38 1 3.8100 5.9312 -0.4339 39 1 6.4824 5.2040 -1.6280 40 1 4.9275 4.3297 -1.7187 41 1 4.0397 0.4095 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166534451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:50 Heat of formation + Delta-G solvation = 4.602948 kcal Electronic energy + Delta-G solvation = -22177.612765 eV Core-core repulsion = 19057.912684 eV Total energy + Delta-G solvation = -3119.700081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.13867 -38.58748 -37.01328 -34.73667 -32.50490 -30.88724 -29.68258 -28.13983 -27.97096 -27.24662 -25.57626 -23.32457 -22.29095 -21.11666 -20.20692 -19.38800 -17.35383 -16.69635 -16.35388 -15.63154 -15.51269 -15.24485 -14.73480 -14.54520 -14.14729 -13.74869 -13.61149 -13.35414 -12.95412 -12.64594 -12.36960 -12.05610 -11.61000 -11.48926 -11.18951 -11.08176 -10.83769 -10.79197 -10.61696 -10.53961 -10.52015 -10.21309 -9.97419 -9.92178 -9.74323 -8.98430 -8.70775 -8.47929 -8.29568 -6.73854 -6.06476 -4.16339 1.96847 2.12115 3.27506 3.34179 3.38280 3.44161 4.01125 4.40413 4.57594 5.05039 5.15585 5.17628 5.21324 5.24018 5.25591 5.39648 5.45586 5.55871 5.60897 5.88230 5.96194 6.02052 6.10312 6.13197 6.19975 6.29902 6.32409 6.39275 6.51341 6.54876 6.75009 6.80862 6.82557 6.93298 6.95687 7.16229 7.30024 7.72063 7.79125 7.98775 8.15716 8.42659 8.81253 9.00419 9.50448 10.96396 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.008188 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.311270 B = 3418.961648 C = 5288.318371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.314 6.314 3 C 0.193 3.807 4 C -0.339 4.339 5 C 0.170 3.830 6 N -0.559 5.559 7 C 0.446 3.554 8 N -0.579 5.579 9 C 0.249 3.751 10 C -0.530 4.530 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.162 3.838 19 C -0.128 4.128 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.263 4.263 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.094 0.906 27 H 0.121 0.879 28 H 0.144 0.856 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.264 0.736 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.794 8.269 3.571 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.226 6.226 3 C 0.140 3.860 4 C -0.365 4.365 5 C 0.010 3.990 6 N -0.280 5.280 7 C 0.211 3.789 8 N -0.286 5.286 9 C 0.129 3.871 10 C -0.569 4.569 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.199 1.199 18 C 0.057 3.943 19 C -0.167 4.167 20 C -0.153 4.153 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.289 4.289 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.113 0.887 27 H 0.139 0.861 28 H 0.161 0.839 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.901 8.636 3.596 13.621 hybrid contribution -0.436 -1.119 -1.105 1.632 sum -10.337 7.517 2.491 13.022 Atomic orbital electron populations 1.22976 0.78922 1.03327 1.01164 1.86060 1.20931 1.27332 1.88270 1.18945 0.91801 0.83772 0.91450 1.21611 1.00084 0.93361 1.21404 1.22001 0.89624 0.96107 0.91260 1.67499 1.06222 1.30287 1.23997 1.18024 0.85728 0.87674 0.87488 1.47316 1.00545 1.07918 1.72778 1.19431 0.89532 0.81008 0.97100 1.21534 1.32151 1.10900 0.92308 0.92168 1.24938 0.95535 0.95764 0.97712 1.69926 1.34791 1.15994 1.32561 0.86520 0.78665 0.77428 0.85013 1.20590 1.21100 1.19858 1.21453 0.96520 0.82415 0.93870 1.22723 1.01758 0.95138 0.97081 1.22332 0.99751 0.96153 0.97071 1.22245 1.01433 0.96368 0.94798 1.22344 0.99358 0.96187 0.97773 1.20783 0.91805 0.99290 1.17029 0.92892 0.92834 0.88711 0.86076 0.83868 0.94657 0.94344 0.92633 0.89906 0.90339 0.92867 0.92561 0.92474 0.93585 0.90303 0.92945 0.91216 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.84 101.05 0.99 1.35 16 2 O -0.31 -5.36 10.51 -18.97 -0.20 -5.56 16 3 C 0.19 3.54 6.73 -38.87 -0.26 3.28 16 4 C -0.34 -5.27 9.10 -39.27 -0.36 -5.63 16 5 C 0.17 2.64 11.17 -17.61 -0.20 2.44 16 6 N -0.56 -10.13 5.02 -12.51 -0.06 -10.20 16 7 C 0.45 9.26 6.21 -155.01 -0.96 8.30 16 8 N -0.58 -12.47 2.50 -166.39 -0.42 -12.89 16 9 C 0.25 6.21 4.98 -5.19 -0.03 6.18 16 10 C -0.53 -14.45 9.39 -34.44 -0.32 -14.78 16 11 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 14 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.16 3.04 3.36 -66.81 -0.22 2.81 16 19 C -0.13 -2.08 6.06 -25.07 -0.15 -2.23 16 20 C -0.12 -1.59 6.91 -24.73 -0.17 -1.76 16 21 C -0.11 -1.62 6.35 -25.07 -0.16 -1.78 16 22 C -0.12 -2.07 5.75 -25.61 -0.15 -2.22 16 23 C -0.26 -5.58 9.23 -39.09 -0.36 -5.94 16 24 H 0.05 0.52 7.72 -51.93 -0.40 0.12 16 25 H 0.05 0.55 7.69 -51.93 -0.40 0.15 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.12 1.51 6.46 -52.49 -0.34 1.17 16 28 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.04 0.92 7.92 -51.93 -0.41 0.51 16 30 H 0.04 1.02 5.98 -51.93 -0.31 0.71 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.08 1.59 7.82 -51.93 -0.41 1.18 16 33 H 0.08 1.39 6.12 -51.93 -0.32 1.07 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.20 6.90 -51.93 -0.36 0.84 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.40 7.02 -51.93 -0.36 1.04 16 41 H 0.15 3.40 6.02 -52.49 -0.32 3.08 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -29.25 325.39 -8.63 -37.88 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.13 Total: 2.56 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.45 Total: -8.32 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.26 Total: -47.94 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.20 Total: -5.56 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.25 -8.63 -37.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.481 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds