Wall clock time and date at job start Mon Mar 30 2020 01:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35755 * 116.99939 * 2 1 4 4 C 1.39488 * 120.80036 * 359.71703 * 3 2 1 5 5 C 1.37809 * 119.25122 * 179.72556 * 4 3 2 6 6 N 1.32054 * 120.91512 * 0.56775 * 5 4 3 7 7 C 1.32489 * 121.75888 * 359.70675 * 6 5 4 8 8 N 1.39027 * 119.67387 * 179.97438 * 7 6 5 9 9 C 1.46501 * 119.99718 * 185.02436 * 8 7 6 10 10 C 1.50701 * 109.46950 * 89.99749 * 9 8 7 11 11 H 1.07996 * 120.00281 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99961 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99525 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00046 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47348 * 89.99992 * 14 12 10 16 16 H 1.48502 * 109.47004 * 210.00245 * 14 12 10 17 17 H 1.48504 * 109.47256 * 330.00278 * 14 12 10 18 18 C 1.46491 * 120.00054 * 5.02102 * 8 7 6 19 19 C 1.54272 * 110.03052 * 57.17046 * 18 8 7 20 20 C 1.54892 * 104.19604 * 217.10345 * 19 18 8 21 21 C 1.54894 * 102.74750 * 37.94054 * 20 19 18 22 22 C 1.53876 * 110.03682 * 300.00361 * 18 8 7 23 23 C 1.38900 * 120.64688 * 0.02562 * 7 6 5 24 24 H 1.08999 * 109.47144 * 300.00247 * 1 2 3 25 25 H 1.08998 * 109.47043 * 59.99846 * 1 2 3 26 26 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.37372 * 359.97438 * 4 3 2 28 28 H 1.08006 * 119.53693 * 180.27335 * 5 4 3 29 29 H 1.08992 * 109.46691 * 209.99697 * 9 8 7 30 30 H 1.09001 * 109.46902 * 330.00084 * 9 8 7 31 31 H 0.97001 * 119.99321 * 180.02562 * 13 12 10 32 32 H 1.09002 * 110.01540 * 178.60884 * 18 8 7 33 33 H 1.08995 * 110.48371 * 335.77882 * 19 18 8 34 34 H 1.09002 * 110.48760 * 98.42554 * 19 18 8 35 35 H 1.09003 * 110.75315 * 279.63051 * 20 19 18 36 36 H 1.08994 * 110.91874 * 156.33187 * 20 19 18 37 37 H 1.09001 * 110.48660 * 203.38222 * 21 20 19 38 38 H 1.08999 * 110.48715 * 80.73761 * 21 20 19 39 39 H 1.09001 * 110.02866 * 238.56804 * 22 18 8 40 40 H 1.08993 * 110.02932 * 359.97438 * 22 18 8 41 41 H 1.07999 * 120.48599 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.3020 2.3899 -0.0059 5 6 1.9606 3.6005 0.0000 6 7 3.2800 3.6550 0.0000 7 6 4.0233 2.5583 0.0000 8 7 5.4094 2.6662 -0.0006 9 6 6.2377 1.4630 -0.1117 10 6 6.5114 1.1740 -1.5652 11 1 6.1090 1.8220 -2.3297 12 6 7.2765 0.0829 -1.9189 13 7 7.7669 -0.7060 -0.9879 14 14 7.6164 -0.2749 -3.7205 15 1 8.8609 0.4199 -4.1370 16 1 7.7786 -1.7385 -3.9124 17 1 6.4797 0.2094 -4.5444 18 6 6.0415 3.9831 0.1098 19 6 5.5695 4.6896 1.3974 20 6 5.4468 6.1790 0.9903 21 6 4.8876 6.0943 -0.4516 22 6 5.6079 4.8763 -1.0658 23 6 3.4313 1.3018 -0.0004 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2226 2.3555 -0.0110 28 1 1.3896 4.5172 0.0000 29 1 7.1808 1.6217 0.4111 30 1 5.7127 0.6181 0.3342 31 1 8.3054 -1.4734 -1.2368 32 1 7.1263 3.8767 0.1176 33 1 4.6021 4.2997 1.7137 34 1 6.3078 4.5705 2.1905 35 1 6.4233 6.6633 0.9980 36 1 4.7513 6.7051 1.6441 37 1 5.1281 7.0002 -1.0080 38 1 3.8100 5.9312 -0.4339 39 1 6.4824 5.2040 -1.6280 40 1 4.9275 4.3297 -1.7187 41 1 4.0397 0.4095 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166534451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:50 Heat of formation + Delta-G solvation = -10.771643 kcal Electronic energy + Delta-G solvation = -22178.279458 eV Core-core repulsion = 19057.912684 eV Total energy + Delta-G solvation = -3120.366773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.53994 -39.94038 -38.33370 -36.37886 -34.49890 -32.26739 -31.14489 -29.66798 -29.42086 -28.39683 -27.14842 -25.07036 -23.75918 -22.66433 -21.40585 -20.77075 -18.75144 -18.62763 -17.95780 -17.11958 -16.70520 -16.67358 -16.37325 -16.00071 -15.60186 -15.20839 -14.95471 -14.70120 -14.43658 -14.35637 -13.78240 -13.39698 -13.20590 -13.12029 -12.81975 -12.64329 -12.38529 -12.31105 -12.07596 -11.93026 -11.79209 -11.75477 -11.65296 -11.41286 -11.23916 -10.65873 -10.55730 -10.10511 -9.68295 -8.48582 -8.04999 -6.38364 0.56526 0.70658 1.34689 1.35796 1.46657 2.12447 2.35199 2.57727 3.04864 3.15222 3.77750 3.86893 3.94101 4.03129 4.22444 4.29342 4.42947 4.43646 4.47245 4.60560 4.67640 4.71608 4.75718 4.83485 4.86052 4.99076 5.00853 5.07193 5.13936 5.15388 5.24567 5.31506 5.38714 5.48178 5.51151 5.61632 5.67759 5.78148 6.03511 6.27806 6.46987 6.72824 6.84436 7.29182 7.48896 8.81997 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.008188 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.311270 B = 3418.961648 C = 5288.318371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.193 3.807 4 C -0.324 4.324 5 C 0.171 3.829 6 N -0.556 5.556 7 C 0.433 3.567 8 N -0.591 5.591 9 C 0.268 3.732 10 C -0.539 4.539 11 H 0.047 0.953 12 C 0.015 3.985 13 N -0.924 5.924 14 Si 0.960 3.040 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.275 1.275 18 C 0.153 3.847 19 C -0.122 4.122 20 C -0.104 4.104 21 C -0.101 4.101 22 C -0.114 4.114 23 C -0.306 4.306 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.116 0.884 27 H 0.163 0.837 28 H 0.192 0.808 29 H 0.015 0.985 30 H 0.013 0.987 31 H 0.268 0.732 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.040 0.960 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.138 10.474 3.121 17.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.139 3.861 4 C -0.348 4.348 5 C 0.012 3.988 6 N -0.277 5.277 7 C 0.199 3.801 8 N -0.300 5.300 9 C 0.147 3.853 10 C -0.578 4.578 11 H 0.066 0.934 12 C -0.185 4.185 13 N -0.564 5.564 14 Si 0.785 3.215 15 H -0.194 1.194 16 H -0.203 1.203 17 H -0.200 1.200 18 C 0.049 3.951 19 C -0.160 4.160 20 C -0.142 4.142 21 C -0.139 4.139 22 C -0.153 4.153 23 C -0.333 4.333 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.135 0.865 27 H 0.180 0.820 28 H 0.209 0.791 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.280 10.859 3.153 16.693 hybrid contribution 0.117 -1.856 -0.933 2.080 sum -12.162 9.004 2.221 15.294 Atomic orbital electron populations 1.23389 0.75734 1.05513 1.02769 1.86034 1.24244 1.27140 1.87917 1.19069 0.91004 0.85432 0.90566 1.22007 1.01941 0.91869 1.19019 1.22862 0.88812 0.98090 0.89034 1.67574 1.07469 1.28757 1.23905 1.18070 0.85454 0.88305 0.88297 1.47111 1.01083 1.07575 1.74196 1.18893 0.88808 0.82072 0.95560 1.21699 1.32123 1.10930 0.93071 0.93442 1.25746 0.95268 0.95493 1.01986 1.70032 1.35365 1.16446 1.34534 0.85523 0.78642 0.77555 0.79778 1.19370 1.20293 1.19961 1.21672 0.95645 0.81690 0.96109 1.22641 1.00898 0.96779 0.95697 1.22306 1.01112 0.94147 0.96598 1.22186 1.00867 0.95498 0.95307 1.22284 0.99107 0.96978 0.96891 1.20676 0.93451 0.98245 1.20896 0.90935 0.91327 0.86540 0.81973 0.79103 0.96682 0.96862 0.92346 0.91560 0.91665 0.92499 0.91128 0.90335 0.91381 0.90449 0.92765 0.94138 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.84 113.37 1.12 1.51 16 2 O -0.34 -11.55 10.51 -90.80 -0.95 -12.50 16 3 C 0.19 7.06 6.73 22.73 0.15 7.22 16 4 C -0.32 -9.10 9.10 22.47 0.20 -8.90 16 5 C 0.17 4.78 11.17 84.56 0.94 5.73 16 6 N -0.56 -19.66 5.02 -193.48 -0.97 -20.64 16 7 C 0.43 18.68 6.21 132.97 0.83 19.51 16 8 N -0.59 -27.11 2.50 -680.33 -1.70 -28.81 16 9 C 0.27 14.51 4.98 85.63 0.43 14.93 16 10 C -0.54 -31.15 9.39 25.60 0.24 -30.91 16 11 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 12 C 0.01 0.83 5.46 84.66 0.46 1.30 16 13 N -0.92 -55.16 13.29 21.45 0.28 -54.87 16 14 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 18 C 0.15 5.92 3.36 45.72 0.15 6.07 16 19 C -0.12 -3.89 6.06 31.67 0.19 -3.69 16 20 C -0.10 -2.57 6.91 31.89 0.22 -2.35 16 21 C -0.10 -2.71 6.35 31.67 0.20 -2.51 16 22 C -0.11 -3.99 5.75 31.32 0.18 -3.81 16 23 C -0.31 -13.81 9.23 22.59 0.21 -13.60 16 24 H 0.07 1.17 7.72 -2.39 -0.02 1.16 16 25 H 0.07 1.17 7.69 -2.39 -0.02 1.15 16 26 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.16 3.19 6.46 -2.91 -0.02 3.17 16 28 H 0.19 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.02 0.86 7.92 -2.39 -0.02 0.84 16 30 H 0.01 0.79 5.98 -2.39 -0.01 0.77 16 31 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.07 2.70 7.82 -2.39 -0.02 2.68 16 33 H 0.06 2.27 6.12 -2.39 -0.01 2.26 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 2.11 6.90 -2.39 -0.02 2.09 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 40 H 0.04 1.65 7.02 -2.39 -0.02 1.63 16 41 H 0.10 5.43 6.02 -2.91 -0.02 5.42 16 Total: -1.00 -68.12 325.39 5.23 -62.89 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.01 Total: 16.17 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 5.53 Total: -9.51 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -2.39 Total: -104.31 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.95 Total: -12.50 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -68.12 5.23 -62.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.121 kcal (2) G-P(sol) polarization free energy of solvation -68.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds