Wall clock time and date at job start Mon Mar 30 2020 01:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32205 * 120.34877 * 2 1 4 4 N 1.28745 * 120.47766 * 179.75259 * 3 2 1 5 5 C 1.32732 * 121.24635 * 0.53715 * 4 3 2 6 6 N 1.38422 * 119.66091 * 179.74505 * 5 4 3 7 7 C 1.46499 * 119.99831 * 179.72003 * 6 5 4 8 8 C 1.50701 * 109.46992 * 89.99941 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47094 * 90.00289 * 12 10 8 14 14 H 1.48505 * 109.47195 * 210.00171 * 12 10 8 15 15 H 1.48493 * 109.47449 * 330.00136 * 12 10 8 16 16 C 1.46504 * 119.99788 * 359.72289 * 6 5 4 17 17 C 1.54262 * 110.03508 * 57.16695 * 16 6 5 18 18 C 1.54889 * 104.19401 * 217.10580 * 17 16 6 19 19 C 1.54886 * 102.75157 * 37.94270 * 18 17 16 20 20 C 1.53872 * 110.02848 * 299.99827 * 16 6 5 21 21 N 1.32704 * 120.67910 * 359.46306 * 5 4 3 22 22 C 1.32418 * 119.46158 * 0.25578 * 21 5 4 23 23 C 1.50700 * 120.58132 * 179.97438 * 22 21 5 24 24 H 1.09000 * 109.47316 * 269.97698 * 1 2 3 25 25 H 1.08997 * 109.47223 * 29.98132 * 1 2 3 26 26 H 1.08997 * 109.46807 * 149.97587 * 1 2 3 27 27 H 1.09002 * 109.47391 * 329.99932 * 7 6 5 28 28 H 1.09001 * 109.46813 * 209.99988 * 7 6 5 29 29 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 30 30 H 1.09004 * 110.01043 * 178.60980 * 16 6 5 31 31 H 1.09001 * 110.48398 * 335.78245 * 17 16 6 32 32 H 1.08998 * 110.48968 * 98.42464 * 17 16 6 33 33 H 1.08998 * 110.75657 * 279.62401 * 18 17 16 34 34 H 1.09003 * 110.91384 * 156.33406 * 18 17 16 35 35 H 1.09001 * 110.49036 * 203.38209 * 19 18 17 36 36 H 1.09001 * 110.59971 * 80.79110 * 19 18 17 37 37 H 1.09007 * 110.03262 * 238.56877 * 20 16 6 38 38 H 1.08994 * 110.03560 * 0.02562 * 20 16 6 39 39 H 1.09003 * 109.46807 * 90.00461 * 23 22 21 40 40 H 1.09002 * 109.47432 * 210.00310 * 23 22 21 41 41 H 1.08996 * 109.47167 * 330.00456 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1750 1.1409 0.0000 4 7 3.4624 1.1438 0.0048 5 6 4.1535 0.0106 -0.0008 6 7 5.5371 0.0520 -0.0007 7 6 6.3072 -1.1942 -0.0007 8 6 6.5713 -1.6215 -1.4215 9 1 6.2028 -1.0243 -2.2424 10 6 7.2844 -2.7744 -1.6734 11 7 7.7336 -3.5014 -0.6738 12 14 7.6124 -3.3037 -3.4345 13 1 8.8901 -2.7076 -3.9007 14 1 7.7050 -4.7845 -3.4973 15 1 6.5028 -2.8398 -4.3056 16 6 6.2312 1.3422 -0.0006 17 6 5.7896 2.1798 1.2171 18 6 5.7396 3.6322 0.6811 19 6 5.1814 3.4486 -0.7520 20 6 5.8445 2.1488 -1.2526 21 7 3.5316 -1.1617 -0.0008 22 6 2.2079 -1.1968 -0.0004 23 6 1.4759 -2.5141 -0.0010 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 5.7411 -1.9712 0.5131 28 1 7.2553 -1.0354 0.5132 29 1 8.2349 -4.3127 -0.8510 30 1 7.3097 1.1855 0.0243 31 1 4.8036 1.8653 1.5591 32 1 6.5188 2.0955 2.0229 33 1 6.7380 4.0685 0.6538 34 1 5.0679 4.2457 1.2817 35 1 5.4667 4.2901 -1.3833 36 1 4.0970 3.3397 -0.7302 37 1 6.7354 2.3845 -1.8349 38 1 5.1400 1.5806 -1.8600 39 1 1.2997 -2.8322 1.0266 40 1 0.5212 -2.3990 -0.5145 41 1 2.0771 -3.2636 -0.5155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166536954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:23 Heat of formation + Delta-G solvation = 56.694851 kcal Electronic energy + Delta-G solvation = -22331.811935 eV Core-core repulsion = 19246.663480 eV Total energy + Delta-G solvation = -3085.148455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.60580 -39.77193 -36.82574 -36.02363 -35.07636 -33.83457 -30.31393 -29.91577 -29.57194 -29.00163 -27.32927 -24.98802 -24.35535 -23.10701 -21.52168 -20.91362 -19.75615 -18.65122 -17.72767 -16.98199 -16.82496 -16.47572 -15.93723 -15.52810 -15.06411 -14.75976 -14.55260 -14.40417 -13.92705 -13.91084 -13.78107 -13.61003 -13.25164 -12.94469 -12.86955 -12.76959 -12.57693 -12.45071 -12.19196 -12.10261 -11.98744 -11.93201 -11.84268 -11.68474 -11.50090 -11.30450 -10.80840 -10.65349 -9.90395 -8.83109 -8.19310 -6.37588 -0.14543 0.18614 1.33875 1.34525 1.45061 1.84352 2.35264 2.76231 2.97476 3.05628 3.33341 3.55036 3.75240 3.79176 3.94824 4.02427 4.16770 4.49727 4.53797 4.60587 4.61703 4.68304 4.69518 4.80004 4.89118 4.91105 4.94504 5.00704 5.08649 5.11304 5.13888 5.17977 5.23647 5.34021 5.35723 5.47226 5.62150 5.65245 5.98233 6.04178 6.21280 6.69440 6.72725 7.30667 7.83860 8.82656 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.007773 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.198464 B = 3601.455961 C = 5115.149677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.063 4.063 3 N -0.188 5.188 4 N -0.341 5.341 5 C 0.490 3.510 6 N -0.560 5.560 7 C 0.275 3.725 8 C -0.533 4.533 9 H 0.040 0.960 10 C 0.018 3.982 11 N -0.923 5.923 12 Si 0.961 3.039 13 H -0.268 1.268 14 H -0.275 1.275 15 H -0.279 1.279 16 C 0.151 3.849 17 C -0.125 4.125 18 C -0.101 4.101 19 C -0.106 4.106 20 C -0.116 4.116 21 N -0.544 5.544 22 C 0.180 3.820 23 C -0.103 4.103 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.268 0.732 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.028 0.972 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.776 8.195 2.169 14.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.217 4.217 3 N -0.037 5.037 4 N -0.200 5.200 5 C 0.133 3.867 6 N -0.273 5.273 7 C 0.154 3.846 8 C -0.572 4.572 9 H 0.059 0.941 10 C -0.181 4.181 11 N -0.562 5.562 12 Si 0.785 3.215 13 H -0.194 1.194 14 H -0.200 1.200 15 H -0.204 1.204 16 C 0.047 3.953 17 C -0.163 4.163 18 C -0.139 4.139 19 C -0.144 4.144 20 C -0.155 4.155 21 N -0.272 5.272 22 C 0.020 3.980 23 C -0.160 4.160 24 H 0.112 0.888 25 H 0.097 0.903 26 H 0.122 0.878 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.126 0.874 40 H 0.143 0.857 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.770 8.944 2.220 14.174 hybrid contribution 0.345 -1.581 -0.874 1.839 sum -10.425 7.363 1.346 12.834 Atomic orbital electron populations 1.20632 0.83561 1.04928 1.04478 1.23631 1.01763 0.90631 1.05702 1.73234 1.00344 1.25965 1.04147 1.73813 1.00647 1.22601 1.22931 1.21045 0.88785 0.86967 0.89881 1.46986 0.99297 1.08497 1.72494 1.18885 0.89346 0.80253 0.96164 1.21521 1.34668 1.08506 0.92540 0.94126 1.25675 0.95169 0.95939 1.01361 1.70024 1.37538 1.16023 1.32636 0.85527 0.78533 0.77714 0.79677 1.19365 1.20030 1.20370 1.21899 0.95798 0.81258 0.96334 1.22677 1.00928 0.96324 0.96406 1.22295 1.01559 0.94394 0.95646 1.22216 1.00456 0.95227 0.96489 1.22339 0.99720 0.97031 0.96435 1.68581 1.11249 1.28593 1.18797 1.23081 0.88600 0.99200 0.87140 1.21027 1.00284 0.89422 1.05312 0.88805 0.90281 0.87771 0.96300 0.96287 0.92301 0.89498 0.92492 0.91300 0.89985 0.90597 0.90637 0.91772 0.91120 0.95265 0.87383 0.85719 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 9.83 71.24 0.70 -0.69 16 2 C -0.06 -1.93 6.87 42.61 0.29 -1.63 16 3 N -0.19 -6.92 11.56 -47.44 -0.55 -7.47 16 4 N -0.34 -14.02 6.22 -59.51 -0.37 -14.39 16 5 C 0.49 22.39 7.10 261.28 1.85 24.25 16 6 N -0.56 -26.31 2.48 -686.66 -1.71 -28.02 16 7 C 0.27 14.94 5.15 85.63 0.44 15.38 16 8 C -0.53 -30.80 9.39 25.60 0.24 -30.56 16 9 H 0.04 2.42 7.81 -2.91 -0.02 2.39 16 10 C 0.02 1.03 5.46 84.66 0.46 1.49 16 11 N -0.92 -54.50 13.29 21.45 0.28 -54.22 16 12 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 16 C 0.15 5.90 3.36 45.71 0.15 6.05 16 17 C -0.12 -4.13 6.04 31.67 0.19 -3.94 16 18 C -0.10 -2.67 6.91 31.88 0.22 -2.45 16 19 C -0.11 -3.14 6.34 31.67 0.20 -2.94 16 20 C -0.12 -4.22 5.78 31.32 0.18 -4.04 16 21 N -0.54 -24.58 9.20 -185.56 -1.71 -26.29 16 22 C 0.18 6.14 6.82 42.58 0.29 6.43 16 23 C -0.10 -2.37 9.84 71.24 0.70 -1.67 16 24 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.10 1.26 6.05 -2.39 -0.01 1.25 16 27 H 0.02 1.13 7.36 -2.39 -0.02 1.11 16 28 H 0.02 1.07 7.92 -2.39 -0.02 1.06 16 29 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.09 3.41 7.82 -2.38 -0.02 3.39 16 31 H 0.06 2.15 5.92 -2.39 -0.01 2.14 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.06 2.14 6.98 -2.39 -0.02 2.12 16 37 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.03 1.24 7.14 -2.39 -0.02 1.23 16 39 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.12 1.79 6.06 -2.39 -0.01 1.77 16 41 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -71.10 327.14 4.93 -66.17 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.02 Total: 11.67 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 5.93 Total: 5.68 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -4.05 Total: -130.38 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -71.10 4.93 -66.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166536954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.864 kcal (2) G-P(sol) polarization free energy of solvation -71.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds