Wall clock time and date at job start Mon Mar 30 2020 02:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00244 * 2 1 4 4 C 1.39362 * 119.99912 * 179.97438 * 2 1 3 5 5 C 1.39583 * 120.07367 * 352.32779 * 4 2 1 6 6 C 1.38363 * 117.96265 * 179.97438 * 5 4 2 7 7 C 1.39583 * 117.96491 * 359.97438 * 6 5 4 8 8 N 1.39356 * 120.07633 * 179.97438 * 7 6 5 9 9 C 1.46846 * 111.00020 * 55.79251 * 8 7 6 10 10 C 1.53035 * 109.52477 * 185.84147 * 9 8 7 11 11 C 1.53122 * 109.27679 * 300.81857 * 10 9 8 12 12 C 1.53124 * 109.15591 * 57.65722 * 11 10 9 13 13 H 1.09002 * 109.50430 * 62.28882 * 12 11 10 14 14 C 1.50705 * 109.49945 * 182.40465 * 12 11 10 15 15 H 1.07999 * 119.99968 * 359.79578 * 14 12 11 16 16 C 1.37871 * 119.99881 * 179.80457 * 14 12 11 17 17 N 1.31514 * 120.00256 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99959 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47060 * 60.00076 * 18 16 14 20 20 H 1.48500 * 109.47083 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46900 * 299.99616 * 18 16 14 22 22 C 1.46840 * 111.00062 * 180.02562 * 8 7 6 23 23 N 1.32280 * 119.85034 * 0.02562 * 7 6 5 24 24 N 1.28348 * 122.18149 * 359.97438 * 23 7 6 25 25 H 1.08996 * 109.47168 * 174.60519 * 1 2 3 26 26 H 1.09002 * 109.47326 * 294.61050 * 1 2 3 27 27 H 1.08994 * 109.46682 * 54.61095 * 1 2 3 28 28 H 1.09002 * 109.47249 * 269.99764 * 3 2 1 29 29 H 1.09003 * 109.47329 * 29.99852 * 3 2 1 30 30 H 1.08999 * 109.47198 * 149.99818 * 3 2 1 31 31 H 1.08004 * 121.02097 * 0.02562 * 5 4 2 32 32 H 1.08004 * 121.01995 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46686 * 305.85825 * 9 8 7 34 34 H 1.08997 * 109.46013 * 65.82336 * 9 8 7 35 35 H 1.09005 * 109.50362 * 180.88586 * 10 9 8 36 36 H 1.09000 * 109.53685 * 60.78133 * 10 9 8 37 37 H 1.08998 * 109.52791 * 297.75354 * 11 10 9 38 38 H 1.09002 * 109.52338 * 177.55884 * 11 10 9 39 39 H 0.96997 * 120.00411 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.46329 * 294.17636 * 22 8 7 41 41 H 1.09006 * 109.46379 * 54.15758 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1618 -1.2069 0.0005 5 6 1.4748 -2.4112 0.1623 6 6 2.2098 -3.5834 0.1555 7 6 3.5921 -3.4883 -0.0133 8 7 4.3750 -4.6410 -0.0265 9 6 3.9075 -5.5830 -1.0515 10 6 4.6937 -6.8912 -0.9405 11 6 6.1855 -6.6020 -1.1289 12 6 6.6360 -5.5820 -0.0795 13 1 6.5027 -6.0022 0.9173 14 6 8.0895 -5.2471 -0.2949 15 1 8.6387 -5.7170 -1.0974 16 6 8.7181 -4.3410 0.5325 17 7 8.0495 -3.7693 1.5101 18 14 10.5200 -3.9265 0.2660 19 1 10.7010 -3.3566 -1.0933 20 1 10.9547 -2.9331 1.2805 21 1 11.3365 -5.1598 0.3985 22 6 5.7935 -4.3116 -0.2149 23 7 4.1574 -2.3013 -0.1597 24 7 3.4755 -1.2140 -0.1533 25 1 -0.3633 -1.0231 -0.0966 26 1 -0.3634 0.4280 0.9343 27 1 -0.3632 0.5951 -0.8378 28 1 2.3793 1.5833 -1.0277 29 1 1.6085 2.0284 0.5138 30 1 3.1499 1.1383 0.5139 31 1 0.4022 -2.4275 0.2882 32 1 1.7286 -4.5428 0.2763 33 1 2.8463 -5.7834 -0.9037 34 1 4.0609 -5.1497 -2.0398 35 1 4.3573 -7.5845 -1.7116 36 1 4.5298 -7.3327 0.0425 37 1 6.3550 -6.1973 -2.1266 38 1 6.7535 -7.5244 -1.0076 39 1 8.4917 -3.1316 2.0920 40 1 5.9384 -3.8841 -1.2071 41 1 6.1021 -3.5889 0.5405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:43 Heat of formation + Delta-G solvation = 82.516726 kcal Electronic energy + Delta-G solvation = -21717.151182 eV Core-core repulsion = 18633.122448 eV Total energy + Delta-G solvation = -3084.028735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.74647 -38.33404 -36.60689 -33.87365 -32.55499 -32.31272 -29.68561 -29.43945 -28.36597 -25.45916 -25.02605 -24.13647 -22.60107 -21.67913 -21.00446 -18.78110 -17.48702 -17.02759 -16.71795 -15.76300 -15.45614 -14.60788 -14.50790 -14.40684 -14.24629 -13.87327 -13.41428 -13.11708 -12.93793 -12.64771 -12.61133 -12.28626 -12.10014 -11.92783 -11.84608 -11.01387 -10.85093 -10.72407 -10.49576 -10.41464 -10.19789 -10.08576 -9.98868 -9.53076 -9.15001 -8.89267 -8.83392 -8.39619 -8.19270 -7.09199 -5.90654 -3.98167 1.21676 1.62323 2.92099 3.39008 3.44265 3.45969 3.96480 4.27389 4.51582 4.70579 4.77468 4.91054 5.10891 5.18528 5.24589 5.30372 5.42526 5.46931 5.49487 5.57645 5.61358 5.75530 5.84122 5.87594 6.02016 6.07997 6.19707 6.35514 6.43875 6.68899 6.79994 6.91798 7.05976 7.10756 7.16506 7.29471 7.60535 7.79098 7.91539 8.09636 8.22681 8.52563 9.05205 9.41775 9.67043 11.15024 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019231 B = 0.005119 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.637485 B = 5468.499309 C = 6698.769395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.620 5.620 3 C 0.105 3.895 4 C 0.300 3.700 5 C -0.164 4.164 6 C -0.100 4.100 7 C 0.224 3.776 8 N -0.469 5.469 9 C 0.065 3.935 10 C -0.115 4.115 11 C -0.115 4.115 12 C 0.052 3.948 13 H 0.034 0.966 14 C -0.519 4.519 15 H 0.056 0.944 16 C 0.065 3.935 17 N -0.882 5.882 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.070 3.930 23 N -0.230 5.230 24 N -0.282 5.282 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.065 0.935 34 H 0.036 0.964 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.262 0.738 40 H 0.023 0.977 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.239 3.607 -3.186 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.340 5.340 3 C -0.038 4.038 4 C 0.059 3.941 5 C -0.197 4.197 6 C -0.132 4.132 7 C -0.018 4.018 8 N -0.188 5.188 9 C -0.062 4.062 10 C -0.153 4.153 11 C -0.152 4.152 12 C 0.033 3.967 13 H 0.052 0.948 14 C -0.558 4.558 15 H 0.074 0.926 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.055 4.055 23 N -0.076 5.076 24 N -0.131 5.131 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.893 4.476 -2.810 16.749 hybrid contribution -0.372 -0.125 -0.473 0.615 sum -16.266 4.350 -3.283 17.154 Atomic orbital electron populations 1.21662 0.79012 1.02821 1.01162 1.45909 1.04508 1.02601 1.80946 1.21491 0.97351 0.83765 1.01235 1.19974 0.91542 0.86569 0.95980 1.21692 1.01170 0.91418 1.05388 1.21817 0.93272 0.99279 0.98789 1.21578 0.91050 0.92062 0.97134 1.59418 1.07039 1.07993 1.44329 1.22147 0.98426 0.93448 0.92181 1.21632 0.97261 0.94969 1.01467 1.21730 0.92834 1.00238 1.00431 1.18750 0.93593 0.89999 0.94399 0.94798 1.21068 0.94717 1.25048 1.14975 0.92580 1.24989 0.97896 0.95875 0.94957 1.69847 1.36092 1.28458 1.17622 0.86679 0.85462 0.78067 0.77914 1.20290 1.21297 1.20355 1.22568 0.79511 1.02124 1.01329 1.73182 1.28944 0.94382 1.11083 1.72819 1.03597 1.20531 1.16163 0.90705 0.92765 0.92443 0.93575 0.92097 0.90498 0.84048 0.83691 0.91662 0.94580 0.92529 0.91489 0.93498 0.92963 0.92797 0.95836 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.79 10.58 59.85 0.63 1.42 16 2 N -0.62 -7.80 3.40 -189.44 -0.64 -8.44 16 3 C 0.10 1.19 10.46 59.84 0.63 1.82 16 4 C 0.30 4.81 7.43 -154.61 -1.15 3.66 16 5 C -0.16 -2.25 9.35 -39.03 -0.36 -2.61 16 6 C -0.10 -1.54 9.28 -39.03 -0.36 -1.90 16 7 C 0.22 4.50 6.49 -154.61 -1.00 3.49 16 8 N -0.47 -9.88 4.69 -173.01 -0.81 -10.69 16 9 C 0.06 1.12 5.26 -3.84 -0.02 1.10 16 10 C -0.12 -1.97 6.09 -26.65 -0.16 -2.13 16 11 C -0.11 -2.39 5.23 -26.60 -0.14 -2.52 16 12 C 0.05 1.31 2.26 -91.69 -0.21 1.10 16 13 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.52 -14.51 8.56 -34.44 -0.29 -14.81 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 17 N -0.88 -26.09 11.33 55.43 0.63 -25.46 16 18 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.07 1.75 3.72 -3.84 -0.01 1.74 16 23 N -0.23 -5.17 9.87 31.28 0.31 -4.86 16 24 N -0.28 -5.66 10.38 31.28 0.32 -5.34 16 25 H 0.07 0.53 5.46 -51.93 -0.28 0.24 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.51 8.07 -51.93 -0.42 0.10 16 30 H 0.08 1.04 7.53 -51.93 -0.39 0.65 16 31 H 0.14 1.36 5.98 -52.48 -0.31 1.05 16 32 H 0.15 1.79 7.21 -52.48 -0.38 1.41 16 33 H 0.06 0.92 6.73 -51.93 -0.35 0.57 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.02 0.62 8.12 -51.93 -0.42 0.20 16 41 H 0.12 3.48 5.68 -51.93 -0.29 3.19 16 LS Contribution 324.64 15.07 4.89 4.89 Total: -1.00 -32.48 324.64 -9.07 -41.55 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.20 Total: -0.59 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -2.55 Total: -7.89 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.19 Total: -54.79 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.48 -9.07 -41.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.072 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds