Wall clock time and date at job start Mon Mar 30 2020 02:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00244 * 2 1 4 4 C 1.39362 * 119.99912 * 179.97438 * 2 1 3 5 5 C 1.39583 * 120.07367 * 352.32779 * 4 2 1 6 6 C 1.38363 * 117.96265 * 179.97438 * 5 4 2 7 7 C 1.39583 * 117.96491 * 359.97438 * 6 5 4 8 8 N 1.39356 * 120.07633 * 179.97438 * 7 6 5 9 9 C 1.46846 * 111.00020 * 55.79251 * 8 7 6 10 10 C 1.53035 * 109.52477 * 185.84147 * 9 8 7 11 11 C 1.53122 * 109.27679 * 300.81857 * 10 9 8 12 12 C 1.53124 * 109.15591 * 57.65722 * 11 10 9 13 13 H 1.09002 * 109.50430 * 62.28882 * 12 11 10 14 14 C 1.50705 * 109.49945 * 182.40465 * 12 11 10 15 15 H 1.07999 * 119.99968 * 359.79578 * 14 12 11 16 16 C 1.37871 * 119.99881 * 179.80457 * 14 12 11 17 17 N 1.31514 * 120.00256 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99959 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47060 * 60.00076 * 18 16 14 20 20 H 1.48500 * 109.47083 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46900 * 299.99616 * 18 16 14 22 22 C 1.46840 * 111.00062 * 180.02562 * 8 7 6 23 23 N 1.32280 * 119.85034 * 0.02562 * 7 6 5 24 24 N 1.28348 * 122.18149 * 359.97438 * 23 7 6 25 25 H 1.08996 * 109.47168 * 174.60519 * 1 2 3 26 26 H 1.09002 * 109.47326 * 294.61050 * 1 2 3 27 27 H 1.08994 * 109.46682 * 54.61095 * 1 2 3 28 28 H 1.09002 * 109.47249 * 269.99764 * 3 2 1 29 29 H 1.09003 * 109.47329 * 29.99852 * 3 2 1 30 30 H 1.08999 * 109.47198 * 149.99818 * 3 2 1 31 31 H 1.08004 * 121.02097 * 0.02562 * 5 4 2 32 32 H 1.08004 * 121.01995 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46686 * 305.85825 * 9 8 7 34 34 H 1.08997 * 109.46013 * 65.82336 * 9 8 7 35 35 H 1.09005 * 109.50362 * 180.88586 * 10 9 8 36 36 H 1.09000 * 109.53685 * 60.78133 * 10 9 8 37 37 H 1.08998 * 109.52791 * 297.75354 * 11 10 9 38 38 H 1.09002 * 109.52338 * 177.55884 * 11 10 9 39 39 H 0.96997 * 120.00411 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.46329 * 294.17636 * 22 8 7 41 41 H 1.09006 * 109.46379 * 54.15758 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1618 -1.2069 0.0005 5 6 1.4748 -2.4112 0.1623 6 6 2.2098 -3.5834 0.1555 7 6 3.5921 -3.4883 -0.0133 8 7 4.3750 -4.6410 -0.0265 9 6 3.9075 -5.5830 -1.0515 10 6 4.6937 -6.8912 -0.9405 11 6 6.1855 -6.6020 -1.1289 12 6 6.6360 -5.5820 -0.0795 13 1 6.5027 -6.0022 0.9173 14 6 8.0895 -5.2471 -0.2949 15 1 8.6387 -5.7170 -1.0974 16 6 8.7181 -4.3410 0.5325 17 7 8.0495 -3.7693 1.5101 18 14 10.5200 -3.9265 0.2660 19 1 10.7010 -3.3566 -1.0933 20 1 10.9547 -2.9331 1.2805 21 1 11.3365 -5.1598 0.3985 22 6 5.7935 -4.3116 -0.2149 23 7 4.1574 -2.3013 -0.1597 24 7 3.4755 -1.2140 -0.1533 25 1 -0.3633 -1.0231 -0.0966 26 1 -0.3634 0.4280 0.9343 27 1 -0.3632 0.5951 -0.8378 28 1 2.3793 1.5833 -1.0277 29 1 1.6085 2.0284 0.5138 30 1 3.1499 1.1383 0.5139 31 1 0.4022 -2.4275 0.2882 32 1 1.7286 -4.5428 0.2763 33 1 2.8463 -5.7834 -0.9037 34 1 4.0609 -5.1497 -2.0398 35 1 4.3573 -7.5845 -1.7116 36 1 4.5298 -7.3327 0.0425 37 1 6.3550 -6.1973 -2.1266 38 1 6.7535 -7.5244 -1.0076 39 1 8.4917 -3.1316 2.0920 40 1 5.9384 -3.8841 -1.2071 41 1 6.1021 -3.5889 0.5405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:43 Heat of formation + Delta-G solvation = 61.331289 kcal Electronic energy + Delta-G solvation = -21718.069852 eV Core-core repulsion = 18633.122448 eV Total energy + Delta-G solvation = -3084.947404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.07447 -39.83571 -37.75113 -35.62812 -34.23026 -33.65499 -31.44460 -30.83761 -29.23424 -27.12041 -26.50099 -25.58548 -23.96431 -23.20572 -22.40017 -20.49302 -18.81650 -18.45585 -18.20859 -17.51274 -16.57959 -16.46453 -15.82090 -15.57466 -15.47412 -15.22277 -14.88289 -14.58824 -14.42325 -14.21843 -13.94458 -13.55633 -13.35448 -13.05328 -12.86248 -12.76295 -12.62620 -12.32449 -12.19521 -12.08167 -11.82000 -11.76129 -11.38318 -11.17774 -10.87608 -10.78368 -10.48438 -10.27913 -9.66896 -8.39830 -8.07858 -6.23454 0.01372 0.34308 1.39657 1.42651 1.49825 1.94671 2.42864 2.63214 2.87659 3.21287 3.57324 3.76534 3.81811 3.93904 4.14773 4.17609 4.29827 4.36319 4.46340 4.54568 4.57141 4.65867 4.75399 4.79410 4.83553 4.88349 4.93354 4.97661 5.00269 5.07701 5.11304 5.30163 5.32899 5.38589 5.61033 5.85608 5.99647 6.14876 6.16732 6.26222 6.35457 6.44772 6.89243 7.45573 8.09401 8.95780 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019231 B = 0.005119 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.637485 B = 5468.499309 C = 6698.769395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.618 5.618 3 C 0.102 3.898 4 C 0.297 3.703 5 C -0.144 4.144 6 C -0.092 4.092 7 C 0.196 3.804 8 N -0.477 5.477 9 C 0.061 3.939 10 C -0.107 4.107 11 C -0.110 4.110 12 C 0.048 3.952 13 H 0.001 0.999 14 C -0.540 4.540 15 H 0.056 0.944 16 C 0.013 3.987 17 N -0.913 5.913 18 Si 0.954 3.046 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.265 1.265 22 C 0.097 3.903 23 N -0.291 5.291 24 N -0.332 5.332 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.195 0.805 32 H 0.185 0.815 33 H 0.110 0.890 34 H 0.027 0.973 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.056 0.944 39 H 0.259 0.741 40 H -0.007 1.007 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.651 2.983 -3.790 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.337 5.337 3 C -0.041 4.041 4 C 0.053 3.947 5 C -0.177 4.177 6 C -0.122 4.122 7 C -0.048 4.048 8 N -0.196 5.196 9 C -0.064 4.064 10 C -0.145 4.145 11 C -0.148 4.148 12 C 0.029 3.971 13 H 0.019 0.981 14 C -0.578 4.578 15 H 0.075 0.925 16 C -0.186 4.186 17 N -0.551 5.551 18 Si 0.779 3.221 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.189 1.189 22 C -0.030 4.030 23 N -0.135 5.135 24 N -0.181 5.181 25 H 0.109 0.891 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.065 0.935 31 H 0.212 0.788 32 H 0.202 0.798 33 H 0.128 0.872 34 H 0.045 0.955 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.011 0.989 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.343 3.879 -3.427 20.024 hybrid contribution 0.515 0.207 -0.282 0.622 sum -18.828 4.086 -3.709 19.620 Atomic orbital electron populations 1.22015 0.75805 1.04496 1.03018 1.46344 1.06354 1.01612 1.79367 1.21550 0.96854 0.84370 1.01371 1.20436 0.90885 0.88955 0.94398 1.22210 1.03354 0.89573 1.02546 1.22159 0.90999 1.01694 0.97361 1.21846 0.93086 0.91110 0.98800 1.59423 1.04814 1.09347 1.46062 1.22354 1.00883 0.92377 0.90822 1.21610 0.94050 0.95722 1.03069 1.21622 0.96142 0.98753 0.98284 1.18704 0.92895 0.91387 0.94155 0.98085 1.21522 0.96475 1.25026 1.14825 0.92549 1.25811 1.02218 0.95820 0.94750 1.70036 1.37627 1.28953 1.18528 0.85679 0.80477 0.78171 0.77763 1.19888 1.21154 1.18942 1.21874 0.82850 1.00469 0.97828 1.73003 1.31296 0.95746 1.13425 1.72647 1.06038 1.20084 1.19317 0.89103 0.90798 0.90627 0.93527 0.88537 0.93549 0.78816 0.79809 0.87157 0.95461 0.88298 0.91286 0.93977 0.92479 0.93225 0.98865 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 10.58 127.77 1.35 2.38 16 2 N -0.62 -14.12 3.40 -753.27 -2.56 -16.68 16 3 C 0.10 2.22 10.46 127.77 1.34 3.56 16 4 C 0.30 9.16 7.43 133.09 0.99 10.15 16 5 C -0.14 -3.46 9.35 22.62 0.21 -3.24 16 6 C -0.09 -2.58 9.28 22.62 0.21 -2.37 16 7 C 0.20 7.97 6.49 133.09 0.86 8.83 16 8 N -0.48 -20.49 4.69 -701.30 -3.29 -23.78 16 9 C 0.06 2.02 5.26 86.33 0.45 2.48 16 10 C -0.11 -3.42 6.09 30.65 0.19 -3.24 16 11 C -0.11 -4.62 5.23 30.68 0.16 -4.46 16 12 C 0.05 2.54 2.26 -11.49 -0.03 2.51 16 13 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 14 C -0.54 -31.53 8.56 25.60 0.22 -31.31 16 15 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 16 C 0.01 0.79 5.30 84.65 0.45 1.24 16 17 N -0.91 -57.12 11.33 21.44 0.24 -56.87 16 18 Si 0.95 46.36 29.54 68.60 2.03 48.38 16 19 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 22 C 0.10 5.18 3.72 86.33 0.32 5.50 16 23 N -0.29 -13.84 9.87 -54.95 -0.54 -14.38 16 24 N -0.33 -13.91 10.38 -54.95 -0.57 -14.48 16 25 H 0.09 0.76 5.46 -2.39 -0.01 0.74 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.10 1.39 8.07 -2.39 -0.02 1.38 16 30 H 0.05 1.30 7.53 -2.39 -0.02 1.28 16 31 H 0.19 2.50 5.98 -2.91 -0.02 2.48 16 32 H 0.18 3.60 7.21 -2.91 -0.02 3.58 16 33 H 0.11 2.64 6.73 -2.39 -0.02 2.62 16 34 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 40 H -0.01 -0.40 8.12 -2.39 -0.02 -0.42 16 41 H 0.08 4.77 5.68 -2.38 -0.01 4.76 16 Total: -1.00 -79.49 324.64 3.05 -76.45 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.02 Total: 9.33 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 6.73 Total: -7.97 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -6.72 Total: -126.19 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -79.49 3.05 -76.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.779 kcal (2) G-P(sol) polarization free energy of solvation -79.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds